Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1040700 Malus domestica HOM05D007250 ORTHO05D009162 2.1e-163 578.9 291 100.0
RcHm_v2.0_Chr6g0272151 Rosa chinensis HOM05D007250 ORTHO05D009162 3.1e-98 362.5 224 80.4
FvH4_2g12161 Fragaria vesca HOM05D007250 ORTHO05D009162 2.3e-93 346.3 226 75.2
Prupe.8G055300 Prunus persica HOM05D007250 ORTHO05D009162 1.4e-90 337.0 244 75.4
Haze_07815 Corylus avellana HOM05D007250 ORTHO05D009162 1.4e-82 310.5 245 64.5
QL04p088484 Quercus lobata HOM05D007250 ORTHO05D009162 1.8e-82 310.1 210 70.5
QL04p088943 Quercus lobata HOM05D007250 ORTHO05D009162 1.8e-82 310.1 242 64.5
CANSAT56G4154 Cannabis sativa HOM05D007250 ORTHO05D009162 3.1e-82 309.3 278 59.7
Glyma.15G260800 Glycine max HOM05D007250 ORTHO05D009162 5.3e-82 308.5 268 61.2
Manes.06G175800 Manihot esculenta HOM05D007250 ORTHO05D009162 5.3e-82 308.5 231 65.8
Duzib213G0161 Durio zibethinus HOM05D007250 ORTHO05D009162 4.5e-81 305.4 214 71.0
Ca_03591_v3 Cicer arietinum L. HOM05D007250 ORTHO05D009162 7.7e-81 304.7 287 55.7
GSVIVG01036780001 Vitis vinifera HOM05D007250 ORTHO05D009162 2.2e-80 303.1 216 66.7
Medtr1g060720 Medicago truncatula HOM05D007250 ORTHO05D009162 1.9e-79 300.1 262 59.5
Gorai.013G142400 Gossypium raimondii HOM05D007250 ORTHO05D009162 3.2e-79 299.3 207 72.0
Ciclev10005586m.g Citrus clementina HOM05D007250 ORTHO05D009162 4.2e-79 298.9 209 68.4
Thecc.07G179900 Theobroma cacao HOM05D007250 ORTHO05D009162 4.2e-79 298.9 265 60.8
Lalb_Chr25g0284601 Lupinus albus HOM05D007250 ORTHO05D009162 5.5e-79 298.5 277 56.7
Potri.007G069400 Populus trichocarpa HOM05D007250 ORTHO05D009162 7.2e-79 298.1 218 67.0
CiPaw.11G061700 Carya illinoinensis HOM05D007250 ORTHO05D009162 9.4e-79 297.7 247 59.5
Phvul.005G050100 Phaseolus vulgaris HOM05D007250 ORTHO05D009162 9.4e-79 297.7 284 58.1
Sabra07G0056900 Salix brachista HOM05D007250 ORTHO05D009162 2.1e-78 296.6 271 57.9
Lj3g0020784 Lotus japonicus HOM05D007250 ORTHO05D009162 4.0e-77 292.4 263 58.2
Gohir.D13G127200 Gossypium hirsutum HOM05D007250 ORTHO05D009162 5.2e-77 292.0 202 71.8
CSS0017513 Camellia sinensis var. sinensis HOM05D007250 ORTHO05D009162 2.0e-76 290.0 209 65.1
TWI38G0063 Tripterygium wilfordii HOM05D007250 ORTHO05D009162 2.6e-76 289.7 239 59.0
Nn3g20174 Nelumbo nucifera HOM05D007250 ORTHO05D009162 1.8e-74 283.5 220 63.2
vmacro11701 Vaccinium macrocarpon HOM05D007250 ORTHO05D009162 4.1e-74 282.3 293 52.9
ClCG02G018630 Citrullus lanatus HOM05D007250 ORTHO05D009162 7.0e-74 281.6 207 65.2
Carub.0001s1619 Capsella rubella HOM05D007250 ORTHO05D009162 9.1e-74 281.2 249 57.4
Sed0012120 Sechium edule HOM05D007250 ORTHO05D009162 9.1e-74 281.2 220 62.3
CAN.G492.76 Capsicum annuum HOM05D007250 ORTHO05D009162 1.3e-72 277.3 257 52.1
Rhsim06G0242100 Rhododendron simsii HOM05D007250 ORTHO05D009162 1.3e-72 277.3 291 51.9
Sopen10g001520 Solanum pennellii HOM05D007250 ORTHO05D009162 1.7e-72 276.9 217 58.1
FAN20G1272 Fragaria x ananassa HOM05D007250 ORTHO05D009162 2.9e-72 276.2 227 65.6
Solyc10g005540.4 Solanum lycopersicum HOM05D007250 ORTHO05D009162 2.9e-72 276.2 217 58.1
A09p60900 Brassica napus HOM05D007250 ORTHO05D009162 6.6e-72 275.0 264 54.5
AUR62018167 Chenopodium quinoa HOM05D007250 ORTHO05D009162 6.6e-72 275.0 222 59.5
CSS0024774 Camellia sinensis var. sinensis HOM05D007250 ORTHO05D009162 8.6e-72 274.6 202 63.9
BraA09t41463Z Brassica rapa HOM05D007250 ORTHO05D009162 1.1e-71 274.2 264 54.5
Hma1.2p1_0151F.1_g067310 Hydrangea macrophylla HOM05D007250 ORTHO05D009162 1.9e-71 273.5 204 63.7
Nitab4.5_0003777g0030 Nicotiana tabacum HOM05D007250 ORTHO05D009162 1.9e-71 273.5 250 52.4
HanXRQChr05g0160551 Helianthus annuus HOM05D007250 ORTHO05D009162 3.3e-71 272.7 260 53.5
ATR0165G048 Amborella trichopoda HOM05D007250 ORTHO05D009162 4.2e-71 272.3 213 61.5
AL1G28580 Arabidopsis lyrata HOM05D007250 ORTHO05D009162 4.2e-71 272.3 251 55.8
CARHR016920 Cardamine hirsuta HOM05D007250 ORTHO05D009162 9.5e-71 271.2 251 55.4
CsaV3_6G013550 Cucumis sativus L. HOM05D007250 ORTHO05D009162 9.5e-71 271.2 205 63.4
Sp1g14600 Schrenkiella parvula HOM05D007250 ORTHO05D009162 9.5e-71 271.2 238 57.6
unitig_748.g7850 Utricularia gibba HOM05D007250 ORTHO05D001497 9.5e-71 271.2 243 51.9
AT1G16445 Arabidopsis thaliana HOM05D007250 ORTHO05D009162 1.2e-70 270.8 251 55.8
C08p44490 Brassica napus HOM05D007250 ORTHO05D009162 1.2e-70 270.8 254 55.5
Peaxi162Scf00114g00116 Petunia axillaris HOM05D007250 ORTHO05D009162 1.2e-70 270.8 233 55.8
Aa31LG7G990 Aethionema arabicum HOM05D007250 ORTHO05D009162 2.1e-70 270.0 255 55.3
Dinv19589 Davidia involucrata HOM05D007250 ORTHO05D009162 2.1e-70 270.0 194 67.0
MSTRG.16100 Avicennia marina HOM05D007250 ORTHO05D009162 2.8e-70 269.6 258 50.4
Actinidia12769 Actinidia chinensis HOM05D007250 ORTHO05D000003 4.7e-70 268.9 223 57.8
Eucgr.F04459 Eucalyptus grandis HOM05D007250 ORTHO05D009162 4.7e-70 268.9 218 60.1
MBI18_g10574_MAGBIO Magnolia biondii HOM05D007250 ORTHO05D009162 4.7e-70 268.9 181 71.3
PSO541G5100 Papaver somniferum HOM05D007250 ORTHO05D009162 6.1e-70 268.5 206 60.2
Thhalv10008448m.g Eutrema salsugineum HOM05D007250 ORTHO05D009162 8.0e-70 268.1 251 53.8
PGSC0003DMG400011276 Solanum tuberosum HOM05D007250 ORTHO05D009162 8.0e-70 268.1 247 53.0
Lsat_1_v5_gn_7_75520 Lactuca sativa HOM05D007250 ORTHO05D009162 4.0e-69 265.8 209 57.4
CDE01G0022 Ceratophyllum demersum HOM05D007250 ORTHO05D009162 1.5e-68 263.8 203 61.1
Nitab4.5_0008957g0010 Nicotiana tabacum HOM05D007250 ORTHO05D009162 1.5e-68 263.8 257 50.6
Psat1g013800 Pisum sativum HOM05D007250 ORTHO05D009162 1.5e-68 263.8 259 57.1
Lj2A15T78 Lonicera japonica HOM05D007250 ORTHO05D009162 3.4e-68 262.7 201 60.7
BolC8t51991H Brassica oleracea HOM05D007250 ORTHO05D009162 1.3e-67 260.8 264 53.0
AUR62042431 Chenopodium quinoa HOM05D007250 ORTHO05D009162 1.1e-66 257.7 206 59.7
Oeu034977.1 Olea europaea HOM05D007250 ORTHO05D009162 1.4e-66 257.3 279 47.3
Os05g0511700 Oryza sativa ssp. japonica HOM05D007250 ORTHO05D009162 2.0e-65 253.4 203 57.1
TAR627G0140 Trochodendron aralioides HOM05D007250 ORTHO05D009162 1.3e-64 250.8 250 54.4
Atru.chr1.107 Acer truncatum HOM05D007250 ORTHO05D009162 2.9e-64 249.6 213 60.1
Zm00001eb292510 Zea mays HOM05D007250 ORTHO05D009162 2.9e-64 249.6 249 51.0
COL.COLO4_32252 Corchorus olitorius HOM05D007250 ORTHO05D009162 3.9e-64 249.2 226 58.8
Gohir.A13G123300 Gossypium hirsutum HOM05D007250 ORTHO05D009162 1.5e-63 247.3 236 55.9
arahy.Tifrunner.gnm1.ann1.3NS56Y Arachis hypogaea HOM05D007250 ORTHO05D009162 1.9e-63 246.9 284 49.3
arahy.Tifrunner.gnm1.ann1.QIZU11 Arachis hypogaea HOM05D007250 ORTHO05D009162 3.3e-63 246.1 335 44.5
HPP92_000965 Vanilla planifolia HOM05D007250 ORTHO05D009162 6.1e-62 241.9 210 56.2
Hund20100 Selenicereus undatus HOM05D007250 ORTHO05D009162 3.1e-61 239.6 177 65.0
Aqoxy6G01374 Aquilegia oxysepala HOM05D007250 ORTHO05D009162 1.7e-59 233.8 258 50.8
AagrBONN_evm.TU.Sc2ySwM_117.37 Anthoceros agrestis HOM05D007250 ORTHO05D009162 2.3e-53 213.4 198 52.5
Cpa.g.sc34.15 Carica papaya HOM05D007250 ORTHO05D009162 4.0e-53 212.6 188 60.6
Pp3c16_19260 Physcomitrium patens HOM05D007250 ORTHO05D009162 6.8e-53 211.8 198 50.5
SGA_v2.0_scaffold7G03608 Striga asiatica HOM05D001395 ORTHO05D002039 3.4e-52 209.5 226 46.9
Mapoly0102s0005 Marchantia polymorpha HOM05D007250 ORTHO05D009162 1.3e-51 207.6 202 48.0
Hma1.2p1_0151F.1_g067320 Hydrangea macrophylla HOM05D007250 ORTHO05D009162 2.9e-51 206.5 140 69.3
EL10Ac2g03263 Beta vulgaris HOM05D007250 ORTHO05D009162 3.9e-48 196.1 273 41.0
SMO141G0022 Selaginella moellendorffii HOM05D007250 ORTHO05D009162 3.3e-47 193.0 181 49.2
PGR031G0704 Punica granatum HOM05D007250 ORTHO05D009162 1.7e-43 180.6 242 43.0
Cc05_g16330 Coffea canephora HOM05D007250 ORTHO05D009162 6.0e-41 172.2 140 56.4
FAN24G3506 Fragaria x ananassa HOM05D007250 ORTHO05D009162 6.8e-37 158.7 98 79.6
Hma1.2p1_0616F.1_g189960 Hydrangea macrophylla HOM05D007250 ORTHO05D009162 4.9e-35 152.5 168 50.0
MCO03G414 Micromonas commoda HOM05D007250 ORTHO05D009162 7.1e-34 148.7 211 37.0
Migut.M01530 Erythranthe guttata HOM05D007250 ORTHO05D009162 4.8e-30 136.0 110 53.6
QL03p068942 Quercus lobata HOM05D007250 ORTHO05D009162 3.4e-28 129.8 209 40.7
SEGI_10655 Sequoiadendron giganteum HOM05D007250 ORTHO05D009162 5.8e-28 129.0 104 55.8
Cre12.g517550 Chlamydomonas reinhardtii HOM05D007250 ORTHO05D009162 6.4e-27 125.6 166 41.0
CBR_g32272 Chara braunii HOM05D007250 ORTHO05D009162 3.2e-26 123.2 145 44.1
Migut.M01529 Erythranthe guttata HOM05D007250 ORTHO05D009162 3.3e-23 113.2 116 50.0
CSS0048664 Camellia sinensis var. sinensis HOM05D007250 ORTHO05D009162 2.9e-19 100.1 107 51.4
Sc10g0008800 Simmondsia chinensis HOM05D007250 ORTHO05D009162 1.1e-18 98.2 84 56.0
PRCOL_00005754 Prasinoderma coloniale HOM05D007250 ORTHO05D009162 2.1e-14 84.0 197 27.4
Mapoly0062s0100 Marchantia polymorpha HOM05D007250 ORTHO05D009162 8.4e-11 72.0 78 44.9
QL04p088027 Quercus lobata HOM05D037085 ORTHO05D009162 3.5e-09 66.6 54 55.6
QL04p088276 Quercus lobata HOM05D037085 ORTHO05D009162 2.1e-06 57.4 33 75.8


User provided reference genes

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