Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 4.1e-107 391.3 189 100.0
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 1.4e-99 366.3 191 94.8
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 1.8e-83 312.8 192 80.2
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 1.9e-80 302.8 179 82.1
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 8.0e-79 297.4 189 77.2
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 1.0e-78 297.0 189 76.7
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 2.6e-77 292.4 189 76.2
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 7.8e-74 280.8 190 68.4
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 1.9e-72 276.2 194 69.1
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 4.3e-72 275.0 194 69.1
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 7.3e-72 274.2 191 65.4
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 1.2e-71 273.5 192 66.7
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 4.7e-71 271.6 191 66.0
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 4.7e-71 271.6 188 65.4
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 6.1e-71 271.2 192 66.1
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 6.1e-71 271.2 191 66.5
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 1.4e-70 270.0 192 65.6
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 6.8e-70 267.7 185 63.8
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 2.6e-69 265.8 198 66.2
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 3.4e-69 265.4 186 65.1
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.7e-68 263.1 167 70.7
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 2.9e-68 262.3 193 65.8
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 3.7e-68 261.9 195 63.1
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 4.9e-68 261.5 191 64.4
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 6.4e-68 261.2 190 65.3
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 1.4e-67 260.0 184 65.2
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 1.9e-67 259.6 179 67.0
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 3.2e-67 258.8 193 64.8
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 4.1e-67 258.5 191 63.9
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 5.4e-67 258.1 184 66.8
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 7.0e-67 257.7 184 67.4
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 2.3e-65 252.7 184 62.5
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 3.9e-65 251.9 191 63.4
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 8.6e-65 250.8 177 65.0
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 1.1e-64 250.4 192 63.5
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 1.5e-64 250.0 197 62.9
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 1.5e-64 250.0 187 64.7
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 2.5e-64 249.2 192 64.1
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 3.3e-64 248.8 175 66.3
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 4.3e-64 248.4 185 63.8
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 7.3e-64 247.7 181 63.0
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 7.3e-64 247.7 181 63.0
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 1.2e-63 246.9 190 62.6
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.6e-63 246.5 186 61.8
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 2.1e-63 246.1 181 65.7
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 2.8e-63 245.7 188 62.2
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 3.6e-63 245.4 187 59.4
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 3.6e-63 245.4 186 61.8
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 4.7e-63 245.0 181 65.2
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 4.7e-63 245.0 182 64.3
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 6.2e-63 244.6 177 61.6
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 6.2e-63 244.6 166 65.7
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 1.4e-62 243.4 181 65.2
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 1.8e-62 243.0 181 64.6
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 1.8e-62 243.0 173 65.9
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 1.8e-62 243.0 187 61.0
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 2.3e-62 242.7 187 62.6
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 2.3e-62 242.7 188 59.0
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 4.0e-62 241.9 181 64.6
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 4.0e-62 241.9 187 63.6
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 4.0e-62 241.9 183 62.8
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 8.9e-62 240.7 185 62.7
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 1.2e-61 240.4 188 62.8
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 2.0e-61 239.6 181 61.3
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 2.0e-61 239.6 191 61.3
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 3.4e-61 238.8 190 60.0
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 4.4e-61 238.4 189 59.8
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 5.8e-61 238.0 191 60.7
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 7.5e-61 237.7 189 59.3
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 7.5e-61 237.7 191 61.3
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 1.3e-60 236.9 194 60.8
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 1.3e-60 236.9 188 61.2
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 2.2e-60 236.1 194 60.3
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 2.2e-60 236.1 187 62.6
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 2.2e-60 236.1 181 63.5
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 3.7e-60 235.3 193 59.6
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 3.7e-60 235.3 175 64.0
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 4.9e-60 235.0 185 59.5
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 6.4e-60 234.6 185 63.2
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 8.3e-60 234.2 191 60.2
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 8.3e-60 234.2 198 58.1
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 8.3e-60 234.2 191 58.6
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 1.1e-59 233.8 191 56.0
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 1.9e-59 233.0 191 59.7
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 1.9e-59 233.0 191 59.7
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 2.4e-59 232.6 190 60.5
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 2.1e-58 229.6 194 59.3
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 2.1e-58 229.6 189 59.3
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 3.5e-58 228.8 150 66.7
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 6.0e-58 228.0 181 59.1
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 6.0e-58 228.0 150 67.3
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 2.3e-57 226.1 150 65.3
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 3.0e-57 225.7 163 61.3
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 5.1e-57 224.9 179 56.4
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 5.1e-57 224.9 148 68.2
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 6.6e-57 224.6 157 63.7
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 2.5e-56 222.6 175 61.1
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 7.3e-56 221.1 163 59.5
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 2.1e-55 219.5 184 56.0
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 2.8e-55 219.2 194 53.6
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 2.8e-55 219.2 215 51.2
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 4.7e-55 218.4 174 60.3
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 2.3e-54 216.1 181 56.9
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 6.8e-54 214.5 186 52.2
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 8.3e-52 207.6 149 66.4
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 6.6e-49 198.0 157 57.3
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 3.6e-47 192.2 164 53.0
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 1.8e-46 189.9 192 50.0
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 5.2e-46 188.3 192 52.1
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 1.7e-44 183.3 155 54.2
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 9.2e-43 177.6 191 47.1
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 1.7e-41 173.3 159 50.3
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.7e-41 173.3 186 44.6
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.7e-41 173.3 186 44.6
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 5.1e-41 171.8 150 50.7
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 1.1e-40 170.6 148 59.5
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.9e-40 169.9 105 79.0
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 2.0e-37 159.8 122 62.3
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 9.9e-37 157.5 127 64.6
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 1.4e-35 153.7 120 61.7
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 2.1e-34 149.8 125 61.6
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 1.4e-27 127.1 124 52.4
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 1.9e-27 126.7 166 38.6
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 1.9e-24 116.7 70 74.3
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 6.9e-22 108.2 74 60.8
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 5.8e-21 105.1 145 35.9
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 4.9e-20 102.1 71 57.7
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 1.9e-19 100.1 80 56.2
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 9.3e-19 97.8 67 61.2
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 1.2e-18 97.4 67 58.2
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.5e-16 90.5 87 51.7
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 3.7e-15 85.9 144 27.8
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 3.4e-13 79.3 71 62.0
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 5.8e-13 78.6 143 24.5
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 5.8e-13 78.6 45 73.3
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 5.5e-11 72.0 118 39.8


User provided reference genes

Program Settings