Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1026900 Malus domestica HOM05D006151 ORTHO05D007487 5.2e-115 417.9 244 100.0
MD10G1026200 Malus domestica HOM05D006151 ORTHO05D007487 4.3e-101 371.7 245 89.0
Prupe.8G031400 Prunus persica HOM05D006151 ORTHO05D007487 1.0e-86 323.9 247 78.5
RcHm_v2.0_Chr6g0275291 Rosa chinensis HOM05D006151 ORTHO05D007487 8.5e-81 304.3 247 69.2
FAN20G0746 Fragaria x ananassa HOM05D006151 ORTHO05D007487 2.5e-80 302.8 244 67.6
FAN24G0867 Fragaria x ananassa HOM05D006151 ORTHO05D007487 7.2e-80 301.2 245 67.8
FvH4_2g13650 Fragaria vesca HOM05D006151 ORTHO05D007487 2.7e-79 299.3 245 67.3
FAN27G2560 Fragaria x ananassa HOM05D006151 ORTHO05D007487 3.6e-79 298.9 245 67.8
FAN15G1313 Fragaria x ananassa HOM05D006151 ORTHO05D007487 6.1e-79 298.1 245 67.8
COL.COLO4_04528 Corchorus olitorius HOM05D006151 ORTHO05D007487 2.3e-70 269.6 249 63.1
Cfa018318 Carpinus fangiana HOM05D006151 ORTHO05D007487 1.7e-65 253.4 235 61.7
Lj5g0026688 Lotus japonicus HOM05D006151 ORTHO05D007487 2.9e-65 252.7 249 55.8
CANSAT25G1414 Cannabis sativa HOM05D006151 ORTHO05D007487 5.0e-65 251.9 254 56.7
Atru.chr13.2098 Acer truncatum HOM05D006151 ORTHO05D007487 1.4e-64 250.4 250 58.4
Dinv25871 Davidia involucrata HOM05D006151 ORTHO05D007487 1.9e-64 250.0 250 58.4
Manes.02G180000 Manihot esculenta HOM05D006151 ORTHO05D007487 9.4e-64 247.7 238 57.1
Gorai.005G078700 Gossypium raimondii HOM05D006151 ORTHO05D007487 2.1e-63 246.5 247 58.7
Ciclev10002306m.g Citrus clementina HOM05D006151 ORTHO05D007487 6.1e-63 245.0 246 54.9
Cpa.g.sc21.206 Carica papaya HOM05D006151 ORTHO05D007487 1.4e-62 243.8 260 56.2
Gohir.D02G069400 Gossypium hirsutum HOM05D006151 ORTHO05D007487 1.8e-62 243.4 247 58.3
GSVIVG01034539001 Vitis vinifera HOM05D006151 ORTHO05D007487 1.8e-62 243.4 241 56.8
Duzib041G0750 Durio zibethinus HOM05D006151 ORTHO05D007487 2.3e-62 243.0 256 59.8
Thecc.08G153600 Theobroma cacao HOM05D006151 ORTHO05D007487 8.8e-62 241.1 250 57.2
Potri.002G067600 Populus trichocarpa HOM05D006151 ORTHO05D007487 1.5e-61 240.4 253 56.5
TAR381G1121 Trochodendron aralioides HOM05D006151 ORTHO05D007487 1.5e-61 240.4 239 54.4
Duzib116G0486 Durio zibethinus HOM05D006151 ORTHO05D007487 2.0e-61 240.0 250 58.0
Eucgr.F04235 Eucalyptus grandis HOM05D006151 ORTHO05D007487 3.3e-61 239.2 225 57.8
Gohir.A02G063800 Gossypium hirsutum HOM05D006151 ORTHO05D007487 5.7e-61 238.4 221 60.6
CSS0023884 Camellia sinensis var. sinensis HOM05D006151 ORTHO05D007487 7.4e-61 238.0 244 57.0
CiPaw.15G015800 Carya illinoinensis HOM05D006151 ORTHO05D007487 2.2e-60 236.5 253 59.7
TAR628G1632 Trochodendron aralioides HOM05D006151 ORTHO05D007487 4.8e-60 235.3 244 55.7
Potri.005G192800 Populus trichocarpa HOM05D006151 ORTHO05D007487 6.3e-60 235.0 238 57.6
Glyma.20G168200 Glycine max HOM05D006151 ORTHO05D007487 5.3e-59 231.9 249 54.2
ClCG08G007050 Citrullus lanatus HOM05D006151 ORTHO05D007487 7.0e-59 231.5 246 52.4
Actinidia04761 Actinidia chinensis HOM05D006151 ORTHO05D007487 9.1e-59 231.1 229 58.1
Sed0016357 Sechium edule HOM05D006151 ORTHO05D007487 2.0e-58 229.9 243 53.5
Phvul.007G081100 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 2.6e-58 229.6 229 54.6
Rhsim11G0083500 Rhododendron simsii HOM05D006151 ORTHO05D007487 2.6e-58 229.6 220 57.3
QL02p039028 Quercus lobata HOM05D006151 ORTHO05D007487 4.5e-58 228.8 244 56.6
Dinv41078 Davidia involucrata HOM05D006151 ORTHO05D007487 7.7e-58 228.0 251 56.6
Nitab4.5_0001062g0090 Nicotiana tabacum HOM05D006151 ORTHO05D007487 7.7e-58 228.0 221 56.6
Gohir.D05G244900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 1.3e-57 227.3 246 54.9
VMungo0720G2232 Vigna mungo HOM05D006151 ORTHO05D007487 1.7e-57 226.9 223 55.6
Sopen04g027470 Solanum pennellii HOM05D006151 ORTHO05D007487 5.0e-57 225.3 242 55.4
TWI34G1794 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 5.0e-57 225.3 252 53.6
Medtr1g098580 Medicago truncatula HOM05D006151 ORTHO05D007487 8.5e-57 224.6 234 55.6
Solyc04g071500.4 Solanum lycopersicum HOM05D006151 ORTHO05D007487 8.5e-57 224.6 242 55.4
Hma1.2p1_0105F.1_g050630 Hydrangea macrophylla HOM05D006151 ORTHO05D007487 2.5e-56 223.0 249 56.2
Glyma.10G223700 Glycine max HOM05D006151 ORTHO05D007487 4.2e-56 222.2 240 54.2
Peaxi162Scf00599g00048 Petunia axillaris HOM05D006151 ORTHO05D007487 5.5e-56 221.9 242 54.1
Nitab4.5_0009071g0020 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.2e-55 220.7 230 54.8
MELO3C008336.2 Cucumis melo HOM05D006151 ORTHO05D007487 2.1e-55 219.9 246 50.0
Gorai.009G254700 Gossypium raimondii HOM05D006151 ORTHO05D007487 2.1e-55 219.9 244 54.1
Duzib093G0584 Durio zibethinus HOM05D006151 ORTHO05D007487 3.6e-55 219.2 247 56.3
Cc10_g14430 Coffea canephora HOM05D006151 ORTHO05D007487 6.1e-55 218.4 245 52.7
CAN.G268.27 Capsicum annuum HOM05D006151 ORTHO05D007487 1.0e-54 217.6 244 51.6
vmacro01457 Vaccinium macrocarpon HOM05D006151 ORTHO05D007487 1.0e-54 217.6 222 54.1
Glyma.16G166000 Glycine max HOM05D006151 ORTHO05D007487 1.8e-54 216.9 226 52.7
Oeu046040.1 Olea europaea HOM05D006151 ORTHO05D007487 3.0e-54 216.1 244 52.0
arahy.Tifrunner.gnm1.ann1.2F6CI2 Arachis hypogaea HOM05D006151 ORTHO05D007487 4.0e-54 215.7 248 50.4
MSTRG.1087 Avicennia marina HOM05D006151 ORTHO05D007487 2.6e-53 213.0 239 51.5
Gohir.A05G243900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 4.4e-53 212.2 253 52.2
PGR044G2378 Punica granatum HOM05D006151 ORTHO05D007487 5.7e-53 211.8 247 49.0
PGR100G0011 Punica granatum HOM05D006151 ORTHO05D007487 5.7e-53 211.8 247 49.0
Lalb_Chr06g0161651 Lupinus albus HOM05D006151 ORTHO05D007487 7.5e-53 211.5 247 51.0
PGSC0003DMG400024091 Solanum tuberosum HOM05D006151 ORTHO05D007487 7.5e-53 211.5 250 53.2
PSO210G3290 Papaver somniferum HOM05D006151 ORTHO05D007487 1.7e-52 210.3 247 47.4
DCAR_001140 Daucus carota HOM05D006151 ORTHO05D007487 2.2e-52 209.9 254 50.8
VMungo0464G0684 Vigna mungo HOM05D006151 ORTHO05D007487 2.2e-52 209.9 240 50.0
AT1G21090 Arabidopsis thaliana HOM05D006151 ORTHO05D007487 2.8e-52 209.5 230 53.0
Carub.0001s2055 Capsella rubella HOM05D006151 ORTHO05D007487 2.8e-52 209.5 243 50.6
Migut.C00998 Erythranthe guttata HOM05D006151 ORTHO05D007487 4.8e-52 208.8 244 51.2
AL1G34140 Arabidopsis lyrata HOM05D006151 ORTHO05D007487 6.3e-52 208.4 248 50.4
Sp1g18760 Schrenkiella parvula HOM05D006151 ORTHO05D007487 6.3e-52 208.4 240 50.4
CARHR021560 Cardamine hirsuta HOM05D006151 ORTHO05D007487 4.1e-51 205.7 247 51.4
BcaB03g14281 Brassica carinata HOM05D006151 ORTHO05D007487 5.3e-51 205.3 242 50.8
Phvul.004G093600 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 1.2e-50 204.1 239 51.5
Psat6g192320 Pisum sativum HOM05D006151 ORTHO05D007487 4.5e-50 202.2 249 48.2
PSO447G0272 Papaver somniferum HOM05D006151 ORTHO05D007487 7.7e-50 201.4 247 45.3
BcaB07g32102 Brassica carinata HOM05D006151 ORTHO05D007487 1.7e-49 200.3 241 48.5
TPR.G17045 Trifolium pratense HOM05D006151 ORTHO05D007487 1.7e-49 200.3 244 50.8
PGR080G0005 Punica granatum HOM05D006151 ORTHO05D007487 2.2e-49 199.9 235 48.9
C05p19820 Brassica napus HOM05D006151 ORTHO05D007487 8.5e-49 198.0 238 49.2
BolC5t30681H Brassica oleracea HOM05D006151 ORTHO05D007487 8.5e-49 198.0 238 49.2
BraA06t24819Z Brassica rapa HOM05D006151 ORTHO05D007487 1.1e-48 197.6 241 48.5
Nn1g06074 Nelumbo nucifera HOM05D006151 ORTHO05D007487 1.1e-48 197.6 236 48.3
Nn5g28758 Nelumbo nucifera HOM05D006151 ORTHO05D007487 1.5e-48 197.2 232 49.1
THA.LOC104813720 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 1.5e-48 197.2 225 49.8
A06p17160 Brassica napus HOM05D006151 ORTHO05D007487 5.5e-48 195.3 241 48.1
Manes.18G092600 Manihot esculenta HOM05D006151 ORTHO05D007487 9.4e-48 194.5 224 50.4
SGA_v2.0_scaffold24G10349 Striga asiatica HOM05D000219 ORTHO05D000226 1.2e-47 194.1 209 52.6
Ca_10677_v3 Cicer arietinum L. HOM05D006151 ORTHO05D007487 2.1e-47 193.4 220 50.9
AUR62013592 Chenopodium quinoa HOM05D006151 ORTHO05D007487 4.7e-47 192.2 245 46.5
MBI09_g40713_MAGBIO Magnolia biondii HOM05D006151 ORTHO05D007487 4.7e-47 192.2 212 51.9
THA.LOC104812035 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 1.4e-46 190.7 220 49.1
HanXRQChr05g0161971 Helianthus annuus HOM05D006151 ORTHO05D007487 2.3e-46 189.9 245 49.8
Peaxi162Scf01294g00115 Petunia axillaris HOM05D006151 ORTHO05D007487 2.3e-46 189.9 242 47.5
AUR62026702 Chenopodium quinoa HOM05D006151 ORTHO05D007487 1.5e-45 187.2 221 47.5
CsaV3_6G005160 Cucumis sativus L. HOM05D006151 ORTHO05D007487 5.7e-45 185.3 237 46.4
Lsat_1_v5_gn_6_100560 Lactuca sativa HOM05D006151 ORTHO05D007487 9.8e-45 184.5 281 43.8
Aqoxy5G02075 Aquilegia oxysepala HOM05D006151 ORTHO05D007487 1.3e-44 184.1 225 50.7
Sed0009804 Sechium edule HOM05D006151 ORTHO05D007487 1.3e-44 184.1 245 47.3
Nitab4.5_0002487g0030 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.1e-43 181.0 204 51.5
Hund26694 Selenicereus undatus HOM05D006151 ORTHO05D007487 1.8e-43 180.3 241 45.2
TWI60G0448 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 4.1e-43 179.1 201 52.2
ECA246G2194 Erigeron canadensis HOM05D006151 ORTHO05D007487 1.6e-42 177.2 280 46.8
Thhalv10008611m.g Eutrema salsugineum HOM05D006151 ORTHO05D007487 2.3e-41 173.3 244 45.5
EL10Ac1g01556 Beta vulgaris HOM05D006151 ORTHO05D007487 1.9e-40 170.2 212 46.2
Aa31LG7G5240 Aethionema arabicum HOM05D006151 ORTHO05D007487 6.1e-39 165.2 194 46.9
BraA07t29267Z Brassica rapa HOM05D006151 ORTHO05D007487 6.1e-39 165.2 189 50.3
A07p15290 Brassica napus HOM05D006151 ORTHO05D007487 8.0e-39 164.9 190 51.6
C07p22470 Brassica napus HOM05D006151 ORTHO05D007487 3.0e-38 162.9 197 48.7
BcaC05g26017 Brassica carinata HOM05D006151 ORTHO05D007487 8.9e-38 161.4 203 47.8
BcaC06g34887 Brassica carinata HOM05D006151 ORTHO05D007487 1.2e-37 161.0 186 49.5
BolC7t42748H Brassica oleracea HOM05D006151 ORTHO05D007487 2.6e-37 159.8 197 48.2
Hund17438 Selenicereus undatus HOM05D006151 ORTHO05D007487 1.3e-36 157.5 252 43.3
arahy.Tifrunner.gnm1.ann1.5IW37T Arachis hypogaea HOM05D006151 ORTHO05D007487 1.7e-36 157.1 248 41.1
Actinidia29533 Actinidia chinensis HOM05D006151 ORTHO05D007487 3.7e-36 156.0 115 67.8
unitig_748.g7705 Utricularia gibba HOM05D006151 ORTHO05D007487 1.0e-33 147.9 239 41.4
Nitab4.5_0010143g0010 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.4e-30 137.5 249 41.4
Ah.05g167920 Amaranthus hybridus HOM05D006151 ORTHO05D007487 3.5e-26 122.9 228 37.7
HPP92_004418 Vanilla planifolia HOM05D006151 ORTHO05D007487 2.0e-21 107.1 229 34.9
Lj7C374T8 Lonicera japonica HOM05D006151 ORTHO05D007487 3.4e-21 106.3 144 47.2
CDE08G0602 Ceratophyllum demersum HOM05D006151 ORTHO05D007487 4.1e-19 99.4 241 35.7
Peaxi162Scf00476g00615 Petunia axillaris HOM05D002901 ORTHO05D003183 3.6e-15 86.3 77 61.0
Sc02g0004030 Simmondsia chinensis HOM05D006151 ORTHO05D007487 8.9e-14 81.6 172 45.3
GSVIVG01026618001 Vitis vinifera HOM05D006151 ORTHO05D007487 3.4e-13 79.7 221 30.8
Nn1g02131 Nelumbo nucifera HOM05D006151 ORTHO05D007487 2.9e-12 76.6 173 33.5
Oeu016600.1 Olea europaea HOM05D006151 ORTHO05D007487 1.4e-06 57.8 55 54.5


User provided reference genes

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