Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 1.4e-225 786.2 458 100.0
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 8.5e-151 537.7 468 67.9
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 4.7e-125 452.2 502 57.8
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.7e-58 231.1 458 38.9
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.1e-57 228.4 458 38.4
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.7e-53 214.5 353 42.2
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.8e-53 213.8 465 37.4
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 8.2e-53 212.2 458 36.7
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 1.7e-50 204.5 213 52.6
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 2.9e-50 203.8 486 36.2
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 5.0e-50 203.0 164 63.4
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 3.2e-49 200.3 362 41.2
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 2.7e-48 197.2 281 45.6
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 4.7e-48 196.4 266 48.5
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 8.0e-48 195.7 205 52.2
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 3.9e-47 193.4 556 34.7
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 3.3e-46 190.3 152 61.8
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 4.4e-46 189.9 466 33.9
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 1.3e-45 188.3 415 36.9
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 2.2e-45 187.6 474 33.5
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 2.8e-45 187.2 280 41.8
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 6.3e-45 186.0 185 54.6
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 6.3e-45 186.0 306 41.8
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 1.1e-44 185.3 164 57.9
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 1.8e-44 184.5 286 43.0
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 2.4e-44 184.1 159 58.5
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 9.1e-44 182.2 252 45.2
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 2.0e-43 181.0 485 34.4
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 2.0e-43 181.0 167 58.1
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.0e-42 178.7 269 42.4
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 1.3e-42 178.3 259 42.1
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.7e-42 177.9 269 42.4
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 6.5e-42 176.0 268 43.7
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 6.5e-42 176.0 145 62.1
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 1.1e-41 175.3 409 36.9
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 1.1e-41 175.3 403 33.7
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 1.5e-41 174.9 166 56.0
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 1.5e-41 174.9 226 42.5
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 1.9e-41 174.5 161 56.5
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 2.5e-41 174.1 143 58.7
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 2.5e-41 174.1 206 48.1
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 4.2e-41 173.3 521 32.2
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 5.5e-41 172.9 172 52.9
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 7.2e-41 172.6 172 54.1
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 1.2e-40 171.8 287 40.8
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 2.1e-40 171.0 256 43.8
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 2.7e-40 170.6 206 49.0
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 3.6e-40 170.2 467 31.7
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 3.6e-40 170.2 483 32.5
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 4.7e-40 169.9 204 49.5
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 4.7e-40 169.9 343 36.2
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 8.0e-40 169.1 410 34.6
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 8.0e-40 169.1 228 43.9
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 1.0e-39 168.7 265 41.5
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.4e-39 168.3 260 41.5
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.8e-39 167.9 253 43.1
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 3.0e-39 167.2 292 40.8
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 5.2e-39 166.4 421 34.7
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 1.2e-38 165.2 233 45.1
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 2.0e-38 164.5 409 33.7
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 2.6e-38 164.1 330 35.5
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 2.6e-38 164.1 146 56.2
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 5.7e-38 162.9 243 40.7
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 7.5e-38 162.5 433 32.1
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 7.5e-38 162.5 471 32.7
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 7.5e-38 162.5 408 34.3
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.3e-37 161.8 304 36.8
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 2.8e-37 160.6 409 35.5
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 6.3e-37 159.5 402 34.1
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 6.3e-37 159.5 168 52.4
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 6.3e-37 159.5 244 42.6
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 1.1e-36 158.7 295 38.6
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 2.4e-36 157.5 164 52.4
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 3.1e-36 157.1 139 54.0
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 4.1e-36 156.8 248 41.5
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 5.3e-36 156.4 146 56.8
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 7.0e-36 156.0 146 50.7
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 9.1e-36 155.6 215 42.8
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.6e-35 154.8 144 53.5
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 1.6e-35 154.8 142 52.1
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 7.7e-35 152.5 146 50.0
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 7.7e-35 152.5 146 49.3
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 1.3e-34 151.8 146 49.3
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 1.3e-34 151.8 144 54.2
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 8.5e-34 149.1 256 39.1
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 3.2e-33 147.1 142 50.7
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 3.2e-33 147.1 411 32.6
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 5.5e-33 146.4 132 53.8
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 1.2e-32 145.2 218 42.7
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 1.2e-32 145.2 154 47.4
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 1.2e-32 145.2 269 35.3
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 1.6e-32 144.8 412 32.0
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 3.6e-32 143.7 226 41.2
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 4.7e-32 143.3 282 36.5
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 1.4e-31 141.7 140 49.3
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 5.2e-31 139.8 206 44.2
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 5.2e-31 139.8 144 49.3
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.5e-30 138.3 274 35.0
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 3.4e-30 137.1 141 48.9
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 9.8e-30 135.6 232 38.4
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 1.7e-29 134.8 361 32.4
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 3.7e-29 133.7 135 48.1
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 1.4e-28 131.7 133 48.1
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 4.1e-28 130.2 235 38.7
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 1.6e-27 128.3 197 39.6
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 1.0e-26 125.6 144 45.8
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 2.9e-26 124.0 373 31.9
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 2.9e-26 124.0 130 47.7
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 5.0e-26 123.2 130 46.2
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 5.0e-26 123.2 130 46.2
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 6.6e-26 122.9 136 44.1
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 8.6e-26 122.5 128 47.7
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 1.9e-25 121.3 160 44.4
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 4.2e-25 120.2 196 39.3
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 5.5e-25 119.8 142 44.4
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 2.1e-24 117.9 146 43.2
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 2.3e-23 114.4 145 44.1
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 5.2e-23 113.2 143 46.2
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 5.7e-22 109.8 365 28.5
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 5.4e-20 103.2 462 32.0
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 2.7e-19 100.9 204 35.8
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 5.9e-19 99.8 140 45.7
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 5.0e-18 96.7 107 49.5
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 7.3e-17 92.8 198 35.9
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 4.7e-16 90.1 371 29.1
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.4e-15 88.6 290 30.0
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 1.7e-13 81.6 106 48.1
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 9.2e-12 75.9 317 27.1
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 9.2e-12 75.9 69 52.2
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 6.0e-11 73.2 107 43.0
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 1.1e-09 68.9 130 35.4
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 1.9e-09 68.2 159 32.1
ECA232G5004 Erigeron canadensis HOM05D005242 ORTHO05D006778 2.5e-09 67.8 64 51.6
Zm00001eb139380 Zea mays HOM05D005242 ORTHO05D006778 1.4e-07 62.0 98 28.6
Nn1g06075 Nelumbo nucifera HOM05D005242 ORTHO05D006778 5.2e-07 60.1 49 59.2
Os12g0165200 Oryza sativa ssp. japonica HOM05D005242 ORTHO05D006778 2.6e-06 57.8 133 25.6
AL2G16910 Arabidopsis lyrata HOM05D000136 ORTHO05D000080 7.5e-06 56.2 93 35.5


User provided reference genes

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