Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 1.3e-204 716.1 348 100.0
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 1.7e-188 662.5 345 92.8
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 9.6e-179 630.2 344 87.2
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 1.2e-168 596.7 345 83.2
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 2.6e-168 595.5 348 81.9
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 7.6e-168 594.0 348 81.3
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.7e-167 592.8 348 81.3
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.9e-167 592.0 348 81.3
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.3e-162 576.6 380 74.7
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 7.4e-155 550.8 351 75.2
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 1.2e-152 543.5 381 70.1
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 2.6e-152 542.3 344 75.6
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 1.0e-151 540.4 353 74.8
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 3.8e-151 538.5 343 74.6
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 3.2e-150 535.4 344 74.7
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 3.2e-150 535.4 342 74.3
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 7.2e-150 534.3 344 72.7
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 7.2e-150 534.3 345 75.1
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 9.4e-150 533.9 342 74.9
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 2.7e-149 532.3 344 74.1
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 1.4e-148 530.0 343 73.5
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 3.9e-148 528.5 343 72.9
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 8.8e-148 527.3 345 74.5
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 8.8e-148 527.3 343 71.4
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 3.3e-147 525.4 334 74.9
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 2.8e-146 522.3 334 73.1
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 1.4e-145 520.0 343 73.5
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 9.1e-145 517.3 344 72.4
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 1.2e-144 516.9 344 70.9
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.5e-144 516.5 343 73.5
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.0e-144 516.2 344 72.1
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 3.4e-144 515.4 343 70.8
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 7.7e-144 514.2 332 73.5
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 1.3e-143 513.5 341 71.6
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.7e-143 513.1 342 71.1
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 1.7e-143 513.1 343 70.8
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 1.7e-143 513.1 342 71.9
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 2.2e-143 512.7 347 72.6
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 2.2e-143 512.7 341 72.1
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 2.9e-143 512.3 341 71.8
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 3.8e-143 511.9 343 70.6
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.8e-143 511.9 344 71.8
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 5.0e-143 511.5 332 73.8
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 6.5e-143 511.1 343 72.0
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 1.1e-142 510.4 347 70.9
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 2.5e-142 509.2 345 70.7
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 4.2e-142 508.4 347 70.6
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 9.4e-142 507.3 345 70.1
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 1.6e-141 506.5 345 71.0
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 2.1e-141 506.1 346 71.1
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 6.1e-141 504.6 343 70.6
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 1.4e-140 503.4 348 71.0
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.3e-140 502.7 344 71.5
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 2.3e-140 502.7 344 71.2
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 3.9e-140 501.9 341 70.7
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 5.1e-140 501.5 346 69.4
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 6.7e-140 501.1 342 69.3
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 6.7e-140 501.1 343 71.1
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 6.7e-140 501.1 334 72.5
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 1.5e-139 500.0 346 71.7
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 3.3e-139 498.8 341 69.2
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 3.3e-139 498.8 348 69.8
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 2.8e-138 495.7 341 69.5
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 4.8e-138 495.0 345 69.9
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 6.3e-138 494.6 344 69.2
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 1.4e-137 493.4 349 67.6
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 2.4e-137 492.7 345 67.5
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 5.3e-137 491.5 338 67.8
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 5.3e-137 491.5 362 66.3
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 1.2e-136 490.3 349 67.0
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 1.7e-135 486.5 326 72.4
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 8.5e-135 484.2 349 67.6
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 8.5e-135 484.2 349 67.6
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 1.1e-134 483.8 345 68.7
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 1.1e-134 483.8 348 67.8
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 1.5e-134 483.4 346 67.9
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 2.5e-134 482.6 354 66.4
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 2.5e-134 482.6 406 60.3
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 2.5e-134 482.6 350 68.3
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 3.2e-134 482.3 343 66.5
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 4.2e-134 481.9 343 68.2
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 5.5e-134 481.5 345 67.8
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 2.7e-133 479.2 300 75.3
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 5.2e-132 474.9 328 69.8
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 1.1e-131 473.8 346 65.6
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 1.1e-131 473.8 350 67.4
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 1.4e-129 466.8 339 66.7
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 4.1e-129 465.3 351 65.8
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 3.5e-128 462.2 290 75.5
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 4.5e-128 461.8 344 65.4
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 4.5e-128 461.8 349 63.0
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 5.9e-128 461.5 321 67.9
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 1.1e-126 457.2 345 67.0
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 1.2e-125 453.8 343 65.3
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 1.8e-124 449.9 334 64.4
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 2.3e-124 449.5 347 64.8
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 4.0e-124 448.7 299 71.9
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 6.8e-124 448.0 347 65.1
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 1.5e-123 446.8 346 65.0
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 2.0e-123 446.4 334 63.5
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 2.3e-116 422.9 322 63.0
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 3.1e-113 412.5 232 81.9
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 3.1e-113 412.5 333 61.3
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 2.1e-109 399.8 251 72.5
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 1.8e-108 396.7 245 75.5
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 2.6e-107 392.9 251 71.3
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 1.4e-105 387.1 309 60.5
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 2.5e-102 376.3 326 59.5
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 2.5e-102 376.3 250 73.6
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 9.5e-102 374.4 330 59.7
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 1.9e-94 350.1 231 71.0
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 4.7e-93 345.5 331 56.8
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 4.4e-91 339.0 240 70.4
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 9.2e-89 331.3 239 68.6
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.1e-85 320.1 241 67.2
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.6e-85 319.3 241 67.2
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 1.4e-84 317.4 243 63.4
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 8.4e-82 308.1 338 50.9
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 2.7e-80 303.1 240 63.3
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 7.1e-65 251.9 190 63.2
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 1.3e-63 247.7 190 63.2
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 1.7e-63 247.3 173 68.8
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 1.9e-62 243.8 248 49.6
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 5.8e-59 232.3 162 69.1
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 9.0e-52 208.4 184 57.1
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 5.5e-49 199.1 199 49.7
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 6.7e-47 192.2 165 59.4
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 3.8e-26 123.2 73 76.7
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 3.2e-25 120.2 79 70.9
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 5.9e-19 99.4 57 73.7
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 1.6e-08 64.7 53 60.4


User provided reference genes

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