Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 6.6e-113 411.4 327 100.0
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 1.9e-72 276.9 176 80.7
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 6.5e-60 235.3 152 79.6
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 2.9e-52 209.9 154 73.4
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 2.9e-52 209.9 154 73.4
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.6e-50 204.1 154 71.4
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 2.5e-48 196.8 155 68.4
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 2.2e-47 193.7 155 68.4
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 2.2e-31 140.6 100 69.0
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.8e-30 137.5 105 62.9
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 4.1e-30 136.3 100 68.0
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 2.0e-29 134.0 175 42.3
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 3.8e-28 129.8 167 46.7
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 2.5e-27 127.1 136 50.0
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 3.6e-26 123.2 167 42.5
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 1.8e-25 120.9 189 38.6
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.8e-25 120.9 117 48.7
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 1.2e-24 118.2 94 57.4
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 2.6e-24 117.1 94 60.6
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 7.5e-24 115.5 99 55.6
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 1.3e-23 114.8 185 42.7
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 1.7e-23 114.4 99 57.6
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 1.7e-23 114.4 112 52.7
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.8e-23 113.6 124 46.0
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 3.7e-23 113.2 156 42.9
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 8.3e-23 112.1 84 65.5
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 1.1e-22 111.7 110 51.8
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.4e-22 111.3 97 57.7
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 1.4e-22 111.3 85 56.5
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 2.4e-22 110.5 89 64.0
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 2.4e-22 110.5 97 59.8
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.6e-21 107.8 124 45.2
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 5.9e-21 105.9 104 51.9
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 5.9e-21 105.9 94 59.6
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 1.0e-20 105.1 104 50.0
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 1.3e-20 104.8 93 51.6
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 1.3e-20 104.8 103 49.5
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 1.3e-20 104.8 90 54.4
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 1.3e-20 104.8 103 49.5
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 1.3e-20 104.8 103 52.4
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 1.3e-20 104.8 85 60.0
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 1.3e-20 104.8 99 53.5
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 1.7e-20 104.4 107 53.3
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 2.2e-20 104.0 97 50.5
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 2.2e-20 104.0 78 60.3
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 2.2e-20 104.0 78 60.3
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 2.2e-20 104.0 79 60.8
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 2.9e-20 103.6 88 59.1
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.8e-20 103.2 88 58.0
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 5.0e-20 102.8 93 60.2
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 6.5e-20 102.4 80 63.8
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 8.5e-20 102.1 87 58.6
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 1.1e-19 101.7 96 55.2
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 1.9e-19 100.9 82 61.0
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.9e-19 100.9 100 49.0
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 1.9e-19 100.9 78 61.5
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 4.2e-19 99.8 89 52.8
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 9.4e-19 98.6 89 57.3
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 1.6e-18 97.8 90 52.2
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 1.6e-18 97.8 105 51.4
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.6e-18 97.8 99 48.5
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 2.1e-18 97.4 90 51.1
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 2.7e-18 97.1 90 50.0
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 3.6e-18 96.7 97 45.4
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 3.6e-18 96.7 78 59.0
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 8.0e-18 95.5 92 53.3
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 1.4e-17 94.7 101 47.5
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 4.0e-17 93.2 96 49.0
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 6.8e-17 92.4 90 51.1
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 6.8e-17 92.4 106 48.1
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 6.8e-17 92.4 74 59.5
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 8.8e-17 92.0 91 51.6
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 2.0e-16 90.9 91 52.7
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 3.4e-16 90.1 101 49.5
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 5.7e-16 89.4 125 40.8
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 5.7e-16 89.4 104 49.0
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.3e-15 88.2 89 51.7
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 1.7e-15 87.8 99 45.5
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 2.2e-15 87.4 106 47.2
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 2.8e-15 87.0 97 46.4
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 1.1e-14 85.1 103 45.6
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 1.4e-14 84.7 90 47.8
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 1.4e-14 84.7 90 46.7
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 1.4e-14 84.7 59 66.1
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 1.4e-14 84.7 102 43.1
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 3.1e-14 83.6 77 50.6
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 3.1e-14 83.6 73 56.2
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 5.4e-14 82.8 102 43.1
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 5.4e-14 82.8 58 56.9
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.6e-13 81.3 78 50.0
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 2.0e-13 80.9 93 47.3
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 3.5e-13 80.1 73 52.1
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 3.5e-13 80.1 59 66.1
ClCG09G009790 Citrullus lanatus HOM05D003899 ORTHO05D003655 3.5e-13 80.1 120 42.5
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 7.7e-13 79.0 62 62.9
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.3e-12 78.2 58 65.5
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 1.3e-12 78.2 77 48.1
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 1.7e-12 77.8 64 59.4
CsaV3_7G024950 Cucumis sativus L. HOM05D000219 ORTHO05D000226 2.9e-12 77.0 112 42.0
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 2.9e-12 77.0 89 43.8
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 5.0e-12 76.3 86 43.0
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 8.6e-12 75.5 48 72.9
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 1.1e-11 75.1 88 44.3
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 1.5e-11 74.7 89 42.7
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 1.9e-11 74.3 84 42.9
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 2.5e-11 73.9 86 47.7
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 2.5e-11 73.9 73 47.9
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 3.3e-11 73.6 70 50.0
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 3.3e-11 73.6 61 59.0
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 3.3e-11 73.6 74 51.4
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 3.3e-11 73.6 61 59.0
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 5.6e-11 72.8 107 43.0
Os08g0108300 Oryza sativa ssp. japonica HOM05D053309 ORTHO05D003655 7.2e-11 72.4 164 28.0
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 9.5e-11 72.0 109 38.5
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.2e-10 71.6 61 50.8
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 1.2e-10 71.6 103 42.7
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 1.2e-10 71.6 59 55.9
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.6e-10 71.2 52 59.6
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 2.1e-10 70.9 57 56.1
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 2.1e-10 70.9 73 49.3
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 2.8e-10 70.5 59 55.9
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.8e-10 70.5 101 40.6
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 3.6e-10 70.1 70 51.4
Cfa013717 Carpinus fangiana HOM05D009119 ORTHO05D003655 4.7e-10 69.7 99 38.4
Haze_22364 Corylus avellana HOM05D009119 ORTHO05D003655 1.4e-09 68.2 115 34.8
Ah.05g167520 Amaranthus hybridus HOM05D000219 ORTHO05D000226 1.8e-09 67.8 75 45.3
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 1.8e-09 67.8 78 44.9
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 1.8e-09 67.8 75 42.7
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 1.8e-09 67.8 92 43.5
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 2.3e-09 67.4 64 51.6
AUR62026786 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.3e-09 67.4 116 33.6
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 3.0e-09 67.0 51 58.8
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 6.8e-09 65.9 67 50.7
AUR62013490 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.2e-08 65.1 116 33.6
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.5e-08 64.7 67 50.7
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.0e-08 64.3 65 50.8
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 2.0e-08 64.3 45 64.4
CAN.G833.2 Capsicum annuum HOM05D003899 ORTHO05D003655 2.6e-08 63.9 80 43.8
COL.COLO4_11973 Corchorus olitorius HOM05D009119 ORTHO05D003655 2.6e-08 63.9 106 39.6
ECA238G1798 Erigeron canadensis HOM05D003899 ORTHO05D003655 2.6e-08 63.9 75 42.7
Solyc07g045590.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 2.6e-08 63.9 115 37.4
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 2.6e-08 63.9 61 54.1
CAN.G1012.7 Capsicum annuum HOM05D003899 ORTHO05D003655 3.4e-08 63.5 82 45.1
Sopen07g030130 Solanum pennellii HOM05D003899 ORTHO05D003655 3.4e-08 63.5 67 46.3
Zm00001eb260320 Zea mays HOM05D053309 ORTHO05D003655 3.4e-08 63.5 124 32.3
Thecc.08G065300 Theobroma cacao HOM05D009119 ORTHO05D003655 5.7e-08 62.8 75 41.3
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 7.5e-08 62.4 64 46.9
PGSC0003DMG400001039 Solanum tuberosum HOM05D003899 ORTHO05D003655 7.5e-08 62.4 65 47.7
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 9.8e-08 62.0 92 42.4
PGSC0003DMG400024810 Solanum tuberosum HOM05D003899 ORTHO05D003655 9.8e-08 62.0 106 38.7
PGSC0003DMG400024811 Solanum tuberosum HOM05D003899 ORTHO05D003655 9.8e-08 62.0 105 39.0
PGSC0003DMG400030777 Solanum tuberosum HOM05D003899 ORTHO05D003655 9.8e-08 62.0 99 36.4
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 1.3e-07 61.6 73 41.1
Solyc03g033290.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 1.7e-07 61.2 89 42.7
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 2.2e-07 60.8 90 35.6
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 4.9e-07 59.7 64 45.3
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 4.9e-07 59.7 66 42.4
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 6.4e-07 59.3 69 46.4
Solyc03g033280.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 6.4e-07 59.3 111 37.8
Duzib093G1486 Durio zibethinus HOM05D009119 ORTHO05D003655 8.3e-07 58.9 85 41.2
PGSC0003DMG400030778 Solanum tuberosum HOM05D003899 ORTHO05D003655 8.3e-07 58.9 80 37.5
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.1e-06 58.5 59 45.8
Atru.chr13.1710 Acer truncatum HOM05D003899 ORTHO05D003655 1.4e-06 58.2 37 64.9
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 1.4e-06 58.2 64 42.2
PGR002G0007 Punica granatum HOM05D003899 ORTHO05D003655 1.8e-06 57.8 36 69.4
PGR042G3889 Punica granatum HOM05D009119 ORTHO05D003655 3.2e-06 57.0 68 42.6
Sc16g0003890 Simmondsia chinensis HOM05D003899 ORTHO05D003655 4.1e-06 56.6 57 43.9
SGA_v2.0_scaffold25G11158 Striga asiatica HOM05D003899 ORTHO05D003655 7.0e-06 55.8 82 43.9
CAN.G833.1 Capsicum annuum HOM05D003899 ORTHO05D003655 9.2e-06 55.5 63 42.9
Duzib147G0063 Durio zibethinus HOM05D003899 ORTHO05D003655 9.2e-06 55.5 76 43.4


User provided reference genes

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