Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 1.7e-94 349.4 183 100.0
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 4.7e-84 314.7 178 91.0
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 2.8e-81 305.4 173 88.4
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 3.7e-73 278.5 180 77.2
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 2.0e-71 272.7 178 78.7
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 7.8e-71 270.8 171 79.5
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 1.1e-69 266.9 177 78.0
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.1e-69 266.9 177 75.7
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.9e-69 266.2 184 75.5
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 2.5e-69 265.8 183 75.4
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.3e-69 265.4 177 75.1
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 3.3e-69 265.4 177 75.1
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 7.3e-69 264.2 174 77.6
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 9.5e-69 263.8 184 74.5
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.1e-68 262.7 169 77.5
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 4.7e-68 261.5 185 71.9
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 4.7e-68 261.5 177 76.8
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 4.7e-68 261.5 172 75.6
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 1.4e-67 260.0 177 74.6
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 2.3e-67 259.2 184 73.9
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 3.1e-67 258.8 184 70.1
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 4.0e-67 258.5 174 77.0
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 5.2e-67 258.1 185 71.9
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 5.2e-67 258.1 176 75.6
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 6.8e-67 257.7 178 77.0
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.2e-66 256.9 178 74.2
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 1.5e-66 256.5 184 70.1
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 1.5e-66 256.5 184 69.0
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 2.0e-66 256.1 172 76.7
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 7.5e-66 254.2 179 73.7
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 7.5e-66 254.2 172 74.4
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 1.3e-65 253.4 176 73.3
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 1.7e-65 253.1 178 72.5
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 3.7e-65 251.9 175 74.9
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 8.3e-65 250.8 184 68.5
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 1.4e-64 250.0 178 73.6
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 1.9e-64 249.6 179 71.5
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 2.4e-64 249.2 184 69.6
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 2.4e-64 249.2 187 70.1
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 3.2e-64 248.8 183 68.3
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 4.1e-64 248.4 168 74.4
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 2.0e-63 246.1 174 73.6
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 3.5e-63 245.4 169 75.7
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 4.6e-63 245.0 174 73.0
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 6.0e-63 244.6 174 71.8
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 6.0e-63 244.6 182 69.8
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 1.0e-62 243.8 170 75.3
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 2.3e-62 242.7 184 67.9
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 3.0e-62 242.3 177 69.5
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 3.9e-62 241.9 196 65.8
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 5.0e-62 241.5 179 67.6
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 6.6e-62 241.1 174 71.3
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.5e-61 240.0 183 66.7
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 1.5e-61 240.0 178 70.8
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 1.9e-61 239.6 184 69.6
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 2.5e-61 239.2 184 65.8
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 3.3e-61 238.8 173 70.5
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 5.6e-61 238.0 184 67.4
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 5.6e-61 238.0 184 66.3
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 5.6e-61 238.0 173 69.4
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 7.3e-61 237.7 174 69.0
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 7.3e-61 237.7 177 68.4
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 9.5e-61 237.3 183 65.6
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 1.2e-60 236.9 179 64.8
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 1.2e-60 236.9 179 64.8
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 1.2e-60 236.9 179 64.8
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 1.2e-60 236.9 179 64.8
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 1.2e-60 236.9 172 70.9
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.6e-60 236.5 185 64.9
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 1.6e-60 236.5 177 68.9
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 1.6e-60 236.5 184 65.2
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.6e-60 236.5 173 68.2
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.6e-60 236.5 177 68.4
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 2.1e-60 236.1 177 68.4
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 2.1e-60 236.1 170 70.6
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.8e-60 235.7 193 65.3
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 3.6e-60 235.3 169 73.4
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 6.2e-60 234.6 179 64.2
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 1.1e-59 233.8 173 70.5
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.4e-59 233.4 184 64.7
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 2.3e-59 232.6 193 65.8
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 4.0e-59 231.9 183 64.5
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 6.8e-59 231.1 207 60.9
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 6.8e-59 231.1 164 70.1
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 2.0e-58 229.6 171 66.7
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 2.0e-58 229.6 171 66.7
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.0e-58 229.6 178 64.6
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.0e-58 229.6 180 65.6
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 4.4e-58 228.4 160 74.4
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 4.4e-58 228.4 184 63.6
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 4.4e-58 228.4 167 65.3
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 5.8e-58 228.0 159 72.3
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 9.9e-58 227.3 184 64.1
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 1.3e-57 226.9 171 66.1
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 1.3e-57 226.9 167 67.1
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.3e-57 226.9 184 63.6
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 1.7e-57 226.5 173 67.1
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 1.7e-57 226.5 179 66.5
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 2.9e-57 225.7 173 67.1
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 2.9e-57 225.7 187 63.6
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 4.9e-57 224.9 163 71.2
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.1e-56 223.8 178 60.7
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.9e-56 223.0 195 62.1
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.4e-56 222.6 153 72.5
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 2.4e-56 222.6 153 72.5
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.2e-56 222.2 153 71.9
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 4.1e-56 221.9 179 66.5
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 1.6e-55 219.9 173 65.3
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 2.1e-55 219.5 176 65.3
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 2.7e-55 219.2 176 63.6
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 3.5e-55 218.8 175 64.0
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 4.6e-55 218.4 196 61.7
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 4.6e-55 218.4 178 64.0
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 4.6e-55 218.4 174 65.5
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 7.8e-55 217.6 193 63.2
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.0e-54 217.2 198 59.1
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 2.3e-54 216.1 179 62.6
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 8.6e-54 214.2 169 60.9
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 1.1e-53 213.8 178 61.8
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.1e-53 213.8 250 51.2
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 1.9e-53 213.0 213 54.9
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 7.3e-53 211.1 174 65.5
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 1.6e-52 209.9 164 62.2
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.4e-51 206.1 157 66.9
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 3.1e-51 205.7 174 61.5
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 5.2e-51 204.9 154 66.2
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 8.9e-51 204.1 205 56.1
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 8.4e-49 197.6 130 74.6
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 8.4e-49 197.6 129 76.7
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 4.1e-48 195.3 164 63.4
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 1.2e-47 193.7 122 77.9
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 1.2e-47 193.7 130 72.3
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 1.6e-47 193.4 124 71.8
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 3.0e-46 189.1 171 61.4
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 5.1e-46 188.3 130 71.5
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 6.6e-46 188.0 130 70.8
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 2.5e-45 186.0 130 70.8
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 2.8e-44 182.6 123 81.3
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 1.4e-43 180.3 158 63.9
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 4.0e-43 178.7 134 70.9
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 2.9e-41 172.6 140 60.0
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.1e-40 170.6 125 64.8
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 1.1e-40 170.6 130 68.5
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 7.8e-39 164.5 151 51.0
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.3e-38 163.7 143 56.6
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 8.7e-38 161.0 162 50.0
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.5e-37 159.5 140 55.7
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 9.6e-37 157.5 151 49.7
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 2.1e-36 156.4 120 65.0
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 6.2e-36 154.8 154 51.3
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 8.1e-36 154.5 123 61.0
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 2.4e-35 152.9 155 49.7
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 4.0e-35 152.1 116 69.8
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 6.0e-31 138.3 95 68.4
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.4e-27 127.1 108 62.0
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 4.0e-27 125.6 154 49.4
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 2.0e-26 123.2 112 60.7
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 7.4e-21 104.8 90 62.2
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 5.1e-14 82.0 78 50.0
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 1.5e-10 70.5 44 77.3
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 3.8e-09 65.9 46 78.3
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 3.8e-09 65.9 46 78.3
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 5.0e-09 65.5 54 55.6
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 1.9e-08 63.5 47 74.5
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 1.9e-08 63.5 46 73.9


User provided reference genes

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