Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1004000 Malus domestica HOM05D007718 ORTHO05D009752 1.7e-64 249.2 131 100.0
Prupe.8G007200 Prunus persica HOM05D007718 ORTHO05D009752 5.2e-45 184.5 124 78.2
RcHm_v2.0_Chr6g0251251 Rosa chinensis HOM05D007718 ORTHO05D009752 1.6e-38 162.9 122 68.9
FAN27G3322 Fragaria x ananassa HOM05D007718 ORTHO05D009752 1.1e-34 150.2 122 66.4
Dinv22108 Davidia involucrata HOM05D007718 ORTHO05D009752 2.7e-33 145.6 114 63.2
TWI18G0705 Tripterygium wilfordii HOM05D007718 ORTHO05D009752 3.0e-32 142.1 126 61.9
CANSAT21G0081 Cannabis sativa HOM05D007718 ORTHO05D009752 1.1e-31 140.2 95 73.7
CANSAT21G2143 Cannabis sativa HOM05D007718 ORTHO05D009752 1.1e-31 140.2 95 73.7
GSVIVG01036292001 Vitis vinifera HOM05D007718 ORTHO05D009752 1.5e-31 139.8 125 59.2
QL08p027549 Quercus lobata HOM05D007718 ORTHO05D009752 7.4e-31 137.5 127 58.3
Sed0001698 Sechium edule HOM05D007718 ORTHO05D009752 8.1e-30 134.0 106 64.2
Thecc.08G178100 Theobroma cacao HOM05D007718 ORTHO05D009752 8.1e-30 134.0 96 67.7
Nn5g27289 Nelumbo nucifera HOM05D007718 ORTHO05D009752 1.1e-29 133.7 105 63.8
Atru.chr13.2505 Acer truncatum HOM05D007718 ORTHO05D009752 1.4e-29 133.3 127 55.1
Potri.019G071800 Populus trichocarpa HOM05D007718 ORTHO05D009752 1.8e-29 132.9 112 59.8
Atru.chr13.2493 Acer truncatum HOM05D007718 ORTHO05D009752 2.4e-29 132.5 126 57.1
CiPaw.04G009400 Carya illinoinensis HOM05D007718 ORTHO05D009752 1.2e-28 130.2 114 58.8
Manes.02G201400 Manihot esculenta HOM05D007718 ORTHO05D009752 1.5e-28 129.8 124 55.6
PSO170G0967 Papaver somniferum HOM05D007718 ORTHO05D009752 2.0e-28 129.4 125 59.2
Manes.02G201100 Manihot esculenta HOM05D007718 ORTHO05D009752 2.6e-28 129.0 121 55.4
Actinidia04142 Actinidia chinensis HOM05D007718 ORTHO05D009752 5.8e-28 127.9 107 59.8
EL10Ac1g01266 Beta vulgaris HOM05D007718 ORTHO05D009752 5.8e-28 127.9 104 58.7
Manes.02G221600 Manihot esculenta HOM05D007718 ORTHO05D009752 1.7e-27 126.3 124 54.0
Manes.02G205384 Manihot esculenta HOM05D007718 ORTHO05D009752 2.2e-27 125.9 124 54.0
PSO017G4737 Papaver somniferum HOM05D007718 ORTHO05D009752 2.9e-27 125.6 127 54.3
Migut.C01378 Erythranthe guttata HOM05D007718 ORTHO05D009752 3.2e-26 122.1 99 56.6
MELO3C022171.2 Cucumis melo HOM05D007718 ORTHO05D009752 4.2e-26 121.7 86 68.6
Duzib177G0547 Durio zibethinus HOM05D007718 ORTHO05D009752 4.2e-26 121.7 96 60.4
Ciclev10022933m.g Citrus clementina HOM05D007718 ORTHO05D009752 5.5e-26 121.3 105 60.0
COL.COLO4_05200 Corchorus olitorius HOM05D007718 ORTHO05D009752 5.5e-26 121.3 90 64.4
ClCG08G001110 Citrullus lanatus HOM05D007718 ORTHO05D009752 7.1e-26 120.9 86 68.6
Gohir.A08G230000 Gossypium hirsutum HOM05D007718 ORTHO05D009752 7.1e-26 120.9 89 62.9
Rhsim01G0004700 Rhododendron simsii HOM05D007718 ORTHO05D009752 1.6e-25 119.8 107 55.1
Aqoxy5G00833 Aquilegia oxysepala HOM05D007718 ORTHO05D009752 6.0e-25 117.9 98 61.2
Gohir.D08G250400 Gossypium hirsutum HOM05D007718 ORTHO05D009752 7.9e-25 117.5 89 60.7
Gorai.004G267100 Gossypium raimondii HOM05D007718 ORTHO05D009752 7.9e-25 117.5 89 60.7
Ah.05g170340 Amaranthus hybridus HOM05D007718 ORTHO05D009752 1.8e-24 116.3 109 56.9
Medtr7g057760 Medicago truncatula HOM05D007718 ORTHO05D009752 1.8e-24 116.3 101 59.4
Ca_07513_v3 Cicer arietinum L. HOM05D007718 ORTHO05D009752 1.9e-23 112.8 125 52.0
Lalb_Chr03g0041731 Lupinus albus HOM05D007718 ORTHO05D009752 3.3e-23 112.1 97 58.8
CDE04G1586 Ceratophyllum demersum HOM05D007718 ORTHO05D009752 4.3e-23 111.7 87 58.6
TPR.G23283 Trifolium pratense HOM05D007718 ORTHO05D009752 5.6e-23 111.3 127 52.0
MSTRG.1597 Avicennia marina HOM05D007718 ORTHO05D009752 1.6e-22 109.8 117 47.0
TAR383G0451 Trochodendron aralioides HOM05D007718 ORTHO05D009752 2.1e-22 109.4 123 52.0
arahy.Tifrunner.gnm1.ann1.KNF5LM Arachis hypogaea HOM05D007718 ORTHO05D009752 2.8e-22 109.0 111 51.4
Phvul.008G126000 Phaseolus vulgaris HOM05D007718 ORTHO05D009752 6.2e-22 107.8 124 49.2
SGA_v2.0_scaffold24G10646 Striga asiatica HOM05D007718 ORTHO05D009752 6.2e-22 107.8 85 58.8
Glyma.08G353800 Glycine max HOM05D007718 ORTHO05D009752 1.4e-21 106.7 118 51.7
arahy.Tifrunner.gnm1.ann1.NNV5AG Arachis hypogaea HOM05D007718 ORTHO05D009752 4.0e-21 105.1 125 46.4
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 2.0e-20 102.8 92 51.1
Lsat_1_v5_gn_3_36061 Lactuca sativa HOM05D007718 ORTHO05D009752 2.6e-20 102.4 102 52.0
FvH4_2g00852 Fragaria vesca HOM05D007718 ORTHO05D009752 3.4e-20 102.1 69 73.9
THA.LOC104807782 Tarenaya hassleriana HOM05D007718 ORTHO05D009752 5.8e-20 101.3 95 55.8
AUR62038531 Chenopodium quinoa HOM05D007718 ORTHO05D009752 2.2e-19 99.4 88 58.0
HanXRQChr09g0267041 Helianthus annuus HOM05D007718 ORTHO05D009752 2.9e-19 99.0 99 51.5
unitig_26.g9859 Utricularia gibba HOM05D007718 ORTHO05D009752 1.4e-18 96.7 94 53.2
Nn5g31449 Nelumbo nucifera HOM05D007718 ORTHO05D009752 4.2e-18 95.1 62 72.6
Carub.0004s0023 Capsella rubella HOM05D007718 ORTHO05D009752 9.3e-18 94.0 59 71.2
Thhalv10000395m.g Eutrema salsugineum HOM05D007718 ORTHO05D009752 9.3e-18 94.0 52 76.9
FAN20G0290 Fragaria x ananassa HOM05D005243 ORTHO05D009752 9.3e-18 94.0 70 67.1
HPP92_012514 Vanilla planifolia HOM05D007718 ORTHO05D009752 9.3e-18 94.0 111 47.7
Oeu020544.1 Olea europaea HOM05D007718 ORTHO05D009752 1.2e-17 93.6 187 38.0
ATR1089G029 Amborella trichopoda HOM05D007718 ORTHO05D009752 2.1e-17 92.8 114 43.0
AL4G10300 Arabidopsis lyrata HOM05D007718 ORTHO05D009752 2.7e-17 92.4 57 71.9
AT2G21195 Arabidopsis thaliana HOM05D007718 ORTHO05D009752 2.7e-17 92.4 66 60.6
C04p50420 Brassica napus HOM05D007718 ORTHO05D009752 6.0e-17 91.3 65 67.7
BolC4t26639H Brassica oleracea HOM05D007718 ORTHO05D009752 6.0e-17 91.3 65 67.7
CARHR112060 Cardamine hirsuta HOM05D007718 ORTHO05D009752 7.9e-17 90.9 61 67.2
A04p15950 Brassica napus HOM05D007718 ORTHO05D009752 5.1e-16 88.2 94 54.3
CSS0008152 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 3.3e-15 85.5 56 66.1
SalBow7G2847 Salvia bowleyana HOM05D007718 ORTHO05D009752 4.3e-15 85.1 124 37.9
BraA04t17231Z Brassica rapa HOM05D007718 ORTHO05D009752 7.4e-15 84.3 57 66.7
Peaxi162Scf00048g00419 Petunia axillaris HOM05D007718 ORTHO05D009752 7.4e-15 84.3 58 67.2
Cc10_g08650 Coffea canephora HOM05D007718 ORTHO05D009752 1.6e-14 83.2 83 48.2
Os07g0265100 Oryza sativa ssp. japonica HOM05D007718 ORTHO05D009752 2.1e-14 82.8 85 47.1
vmacro13123 Vaccinium macrocarpon HOM05D007718 ORTHO05D009752 2.4e-13 79.3 121 44.6
Zm00001eb304750 Zea mays HOM05D007718 ORTHO05D009752 2.4e-13 79.3 88 43.2
Psat3g145480 Pisum sativum HOM05D007718 ORTHO05D009752 4.1e-13 78.6 73 54.8
Lj1g0018023 Lotus japonicus HOM05D007718 ORTHO05D009752 9.0e-13 77.4 99 47.5
SEGI_14522 Sequoiadendron giganteum HOM05D007718 ORTHO05D009752 5.0e-11 71.6 85 44.7
AagrBONN_evm.TU.Sc2ySwM_344.3280 Anthoceros agrestis HOM05D007718 ORTHO05D009752 9.3e-10 67.4 90 40.0
FAN24G0504 Fragaria x ananassa HOM05D007718 ORTHO05D009752 3.5e-09 65.5 65 55.4
Mapoly0002s0003 Marchantia polymorpha HOM05D007718 ORTHO05D009752 6.1e-09 64.7 91 39.6
Aa31LG7G15310 Aethionema arabicum HOM05D007718 ORTHO05D009752 1.3e-08 63.5 69 46.4
Aa31sc115G10 Aethionema arabicum HOM05D007718 ORTHO05D009752 1.8e-08 63.2 39 66.7
BcaC02g08810 Brassica carinata HOM05D007718 ORTHO05D009752 3.9e-08 62.0 38 76.3
CsaV3_5G039910 Cucumis sativus L. HOM05D007718 ORTHO05D009752 3.9e-08 62.0 56 53.6
VMungo1383G3332 Vigna mungo HOM05D000479 ORTHO05D001285 7.4e-07 57.8 36 69.4


User provided reference genes

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