Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 4.9e-175 617.8 347 100.0
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 1.0e-143 513.8 345 79.4
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 1.7e-122 443.4 350 69.1
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.0e-92 344.4 351 57.0
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 4.0e-92 342.4 358 58.1
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 1.2e-91 340.9 358 57.8
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.6e-91 339.7 358 57.8
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 8.3e-90 334.7 359 57.4
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 7.0e-89 331.6 344 56.1
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 1.6e-88 330.5 345 57.1
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 2.5e-86 323.2 357 54.3
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 3.1e-84 316.2 354 60.2
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 2.0e-83 313.5 344 52.9
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 4.4e-83 312.4 359 54.0
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.7e-82 310.5 344 51.5
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 3.7e-82 309.3 363 57.9
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 6.4e-82 308.5 387 50.6
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.1e-81 307.8 344 51.2
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 5.4e-81 305.4 363 51.0
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 9.2e-81 304.7 360 53.1
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.6e-80 303.9 376 50.5
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.3e-79 300.1 359 54.6
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 8.6e-79 298.1 351 57.5
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 4.3e-78 295.8 358 59.8
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 9.5e-78 294.7 344 52.0
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.8e-77 293.1 363 49.0
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 6.2e-77 292.0 373 53.4
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.1e-76 289.7 369 54.2
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 6.8e-76 288.5 374 52.1
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 8.9e-76 288.1 368 55.7
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 3.4e-75 286.2 353 51.0
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.3e-74 284.3 363 48.2
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.7e-74 282.7 363 48.5
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.9e-73 280.4 371 54.7
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.4e-73 280.0 363 48.2
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 2.1e-72 276.9 362 49.4
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 9.6e-70 268.1 371 51.2
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.6e-69 267.3 349 48.4
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.4e-68 264.2 379 44.3
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.8e-68 263.8 355 47.9
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 1.8e-68 263.8 354 46.0
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.2e-67 261.2 355 47.6
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 3.4e-67 259.6 359 47.6
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.7e-66 257.3 361 46.3
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.1e-65 254.6 397 45.3
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.1e-62 244.6 358 46.9
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 2.5e-62 243.4 357 52.7
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 7.3e-62 241.9 359 45.1
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.3e-61 241.1 353 46.2
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.6e-61 239.6 379 44.1
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 5.3e-60 235.7 405 43.5
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 9.0e-60 235.0 299 47.8
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 9.0e-60 235.0 299 47.8
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 9.0e-60 235.0 365 45.8
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.6e-59 233.4 359 44.6
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 2.9e-58 229.9 392 41.3
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.8e-58 229.6 346 40.8
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 8.4e-58 228.4 342 43.9
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 9.3e-57 224.9 374 46.8
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 2.1e-56 223.8 348 41.7
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 7.9e-56 221.9 357 42.0
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 2.3e-55 220.3 355 45.1
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 3.9e-55 219.5 321 49.8
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 5.1e-55 219.2 366 43.2
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 4.8e-53 212.6 354 41.0
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.1e-52 211.5 351 43.6
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.4e-52 211.1 356 39.9
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.8e-52 210.7 351 40.7
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 2.4e-52 210.3 343 44.6
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.2e-51 208.0 354 44.9
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 1.2e-51 208.0 377 39.5
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 3.4e-51 206.5 361 37.4
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.8e-51 205.7 367 46.0
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 2.9e-50 203.4 400 39.8
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.4e-49 200.3 348 38.5
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.4e-49 200.3 349 40.1
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.4e-49 200.3 345 42.3
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.4e-49 199.1 365 44.1
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 3.5e-48 196.4 346 41.6
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 2.3e-47 193.7 368 41.6
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.1e-47 192.6 345 40.0
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.5e-46 190.3 344 39.0
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.3e-46 189.5 347 39.8
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 7.4e-46 188.7 374 40.9
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 1.3e-45 188.0 343 39.4
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 2.1e-45 187.2 347 39.2
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.1e-44 184.9 348 37.9
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.1e-44 184.9 371 41.8
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 4.0e-44 183.0 342 38.6
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 1.2e-43 181.4 349 37.5
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 4.5e-43 179.5 346 39.3
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.0e-42 178.3 345 36.2
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.0e-42 178.3 368 37.2
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.7e-42 177.6 341 37.0
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.4e-41 174.5 132 67.4
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 4.2e-41 172.9 345 37.7
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 4.2e-41 172.9 345 37.7
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 9.3e-41 171.8 345 37.4
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.6e-40 171.0 375 40.8
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 4.6e-40 169.5 348 37.6
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.0e-39 168.3 350 37.1
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.0e-39 168.3 348 35.9
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.8e-39 167.5 348 35.9
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 3.0e-39 166.8 333 39.0
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.7e-39 165.6 342 35.4
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.5e-38 164.5 343 38.5
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 5.7e-38 162.5 346 38.4
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.3e-37 161.4 385 40.8
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.1e-36 158.3 340 37.4
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 1.4e-36 157.9 345 36.8
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.8e-36 157.5 341 34.3
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 2.4e-36 157.1 121 66.1
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 3.1e-36 156.8 124 69.4
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.5e-35 154.5 340 36.8
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 2.2e-34 150.6 331 36.9
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.2e-34 150.6 350 34.6
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 2.9e-34 150.2 331 36.9
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 3.8e-34 149.8 342 35.7
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 4.2e-33 146.4 374 39.6
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 4.2e-33 146.4 350 36.3
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.1e-32 144.1 350 34.6
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 1.0e-31 141.7 119 59.7
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 9.7e-30 135.2 342 38.3
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.6e-29 134.4 359 33.4
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 2.2e-29 134.0 107 69.2
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.2e-29 134.0 356 33.7
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 4.8e-29 132.9 486 29.2
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 8.2e-29 132.1 357 33.9
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.4e-28 130.6 254 39.0
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 3.1e-28 130.2 163 47.2
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 4.1e-28 129.8 343 33.2
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 4.1e-28 129.8 343 33.2
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 9.0e-28 128.6 138 51.4
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.2e-27 128.3 152 49.3
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-27 128.3 152 49.3
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 5.9e-27 125.9 111 67.6
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 5.9e-27 125.9 111 67.6
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 1.0e-26 125.2 121 57.0
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 1.7e-26 124.4 134 51.5
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 1.7e-26 124.4 134 51.5
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.9e-26 123.6 370 36.5
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 8.5e-26 122.1 344 33.1
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 8.5e-26 122.1 344 33.1
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 8.5e-26 122.1 344 33.1
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.4e-25 121.3 479 31.5
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.4e-25 121.3 171 41.5
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 3.2e-25 120.2 113 63.7
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 9.4e-25 118.6 157 52.2
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.2e-24 118.2 141 52.5
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 2.7e-24 117.1 136 52.2
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.8e-23 114.4 418 26.6
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 2.3e-23 114.0 337 37.4
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.9e-23 113.2 73 80.8
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 2.0e-22 110.9 155 43.9
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 3.3e-22 110.2 143 51.7
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 9.7e-22 108.6 109 57.8
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 9.7e-22 108.6 142 50.0
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 2.2e-21 107.5 139 51.8
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.1e-20 105.1 103 46.6
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.5e-19 101.3 73 69.9
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 8.5e-18 95.5 350 30.3
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.4e-17 94.7 151 39.7
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 6.1e-16 89.4 137 37.2
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 1.8e-15 87.8 98 48.0
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 6.7e-15 85.9 98 46.9
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 3.3e-14 83.6 98 44.9
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 7.4e-14 82.4 86 51.2
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 9.7e-14 82.0 155 35.5
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 8.2e-13 79.0 116 40.5
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 5.3e-12 76.3 147 35.4
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.2e-11 75.1 43 83.7
Sabra16G0293500 Salix brachista HOM05D003874 ORTHO05D004545 1.4e-07 61.6 94 39.4
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 5.7e-06 56.2 101 37.6
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 5.7e-06 56.2 71 39.4
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 9.7e-06 55.5 153 30.1


User provided reference genes

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