Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 1.8e-195 685.6 333 100.0
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 2.5e-123 446.0 334 72.2
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 6.5e-108 394.8 334 62.9
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 4.1e-102 375.6 334 59.3
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 4.1e-102 375.6 339 60.8
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 1.2e-101 374.0 339 61.7
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 7.7e-101 371.3 338 58.9
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 6.1e-98 361.7 336 56.8
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 1.5e-96 357.1 334 57.5
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 1.5e-96 357.1 334 59.0
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 7.4e-96 354.8 334 58.7
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 1.7e-95 353.6 334 56.0
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 4.8e-95 352.1 337 55.8
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 8.2e-95 351.3 334 56.9
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 8.2e-95 351.3 335 56.1
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 1.2e-93 347.4 329 56.5
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 2.6e-93 346.3 334 54.8
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 2.6e-93 346.3 334 56.0
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 3.5e-93 345.9 336 55.4
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 7.7e-93 344.7 335 54.9
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 2.9e-92 342.8 338 54.4
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 2.9e-92 342.8 336 55.4
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 3.8e-92 342.4 334 53.3
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 5.0e-92 342.0 337 54.9
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 2.5e-91 339.7 336 53.3
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 3.2e-91 339.3 334 53.0
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 5.5e-91 338.6 339 52.5
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 2.7e-90 336.3 333 53.5
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 4.7e-90 335.5 339 54.3
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 4.7e-90 335.5 335 54.3
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 6.1e-90 335.1 334 53.3
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 6.1e-90 335.1 327 53.5
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 1.0e-89 334.3 338 53.8
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 1.4e-89 334.0 332 54.8
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 1.8e-89 333.6 336 54.2
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 3.0e-89 332.8 336 53.9
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 5.2e-89 332.0 337 54.3
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 6.8e-89 331.6 335 52.8
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 1.5e-88 330.5 334 55.4
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 1.5e-88 330.5 334 53.9
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 1.5e-88 330.5 335 53.7
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 4.4e-88 328.9 336 53.0
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 1.7e-87 327.0 331 53.5
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 2.8e-87 326.2 334 54.2
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 3.7e-87 325.9 332 51.8
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 3.1e-86 322.8 332 54.5
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 1.2e-85 320.9 337 51.3
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 1.6e-85 320.5 334 51.5
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 2.0e-85 320.1 337 52.2
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 2.0e-85 320.1 339 51.3
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 2.7e-85 319.7 334 52.4
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 2.9e-84 316.2 334 50.3
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 2.9e-84 316.2 334 50.6
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 5.0e-84 315.5 334 50.3
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 8.5e-84 314.7 334 50.3
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 6.1e-82 308.5 334 50.6
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 5.2e-81 305.4 334 49.4
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 8.8e-81 304.7 341 47.5
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 4.4e-80 302.4 275 58.2
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 1.3e-79 300.8 332 48.8
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 8.3e-79 298.1 340 49.7
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 1.1e-78 297.7 337 49.3
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 1.1e-78 297.7 337 49.3
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 2.4e-78 296.6 338 49.7
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 3.1e-78 296.2 340 49.4
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 7.0e-78 295.0 336 50.0
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 1.6e-77 293.9 338 49.1
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 1.6e-77 293.9 335 48.4
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 2.0e-77 293.5 262 55.7
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 2.0e-77 293.5 332 48.5
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 2.0e-77 293.5 338 47.3
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 2.7e-77 293.1 335 48.4
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 2.7e-77 293.1 334 48.2
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 3.5e-77 292.7 332 48.2
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 7.7e-77 291.6 336 50.0
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 7.7e-77 291.6 332 48.8
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 1.7e-76 290.4 331 47.1
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 1.5e-75 287.3 332 48.8
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 2.5e-75 286.6 341 47.2
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 3.3e-75 286.2 338 47.0
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 4.2e-75 285.8 332 46.4
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 5.5e-75 285.4 337 47.5
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 7.2e-75 285.0 333 47.7
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 9.5e-75 284.6 336 45.5
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 3.6e-74 282.7 336 45.5
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 4.7e-74 282.3 332 46.4
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 3.4e-72 276.2 231 61.9
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 3.4e-72 276.2 338 46.4
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 5.7e-72 275.4 329 45.6
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 9.8e-72 274.6 336 45.5
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 6.3e-71 271.9 334 44.3
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 1.4e-70 270.8 327 46.2
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.8e-70 270.4 338 45.9
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 9.2e-70 268.1 336 47.6
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 5.0e-68 262.3 335 44.5
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.5e-67 260.8 335 43.3
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 9.5e-67 258.1 322 47.2
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 1.5e-64 250.8 332 43.7
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.4e-64 249.6 331 44.7
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 6.6e-60 235.3 335 42.4
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 1.5e-56 224.2 334 40.7
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 9.9e-48 194.9 329 37.7
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 4.1e-46 189.5 327 35.5
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 4.1e-46 189.5 325 35.7
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.0e-44 184.9 232 44.8
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 2.3e-44 183.7 328 35.7
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 8.6e-44 181.8 333 35.4
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.1e-43 181.4 330 34.2
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 2.8e-42 176.8 337 33.5
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 1.4e-41 174.5 242 43.4
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.4e-33 147.9 234 35.0
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 1.8e-33 147.5 147 53.7
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 1.9e-27 127.5 223 32.7
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.3e-26 124.8 189 37.0
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 3.4e-24 116.7 226 30.5
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 9.3e-14 82.0 72 58.3
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 7.9e-13 79.0 86 53.5
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 2.3e-12 77.4 81 49.4
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 4.5e-08 63.2 104 37.5


User provided reference genes

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