Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 0.0e+00 1485.3 763 100.0
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 4.1e-283 978.0 766 69.7
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 1.3e-225 786.9 767 59.1
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 8.7e-225 784.3 770 58.8
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.8e-222 776.5 754 59.0
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.1e-222 775.8 771 58.0
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 7.7e-173 611.7 766 48.7
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 6.6e-164 582.0 558 59.7
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 2.0e-157 560.5 811 46.0
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 1.5e-147 527.7 778 44.7
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 2.1e-146 523.9 716 46.2
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 2.1e-146 523.9 740 45.7
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 1.2e-144 518.1 769 44.9
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 2.6e-144 516.9 721 45.6
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 4.0e-137 493.0 808 41.3
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 1.5e-136 491.1 774 43.2
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 2.0e-136 490.7 774 43.2
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 3.2e-134 483.4 827 42.2
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 2.3e-132 477.2 761 43.2
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 1.1e-129 468.4 770 43.5
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 9.0e-129 465.3 757 44.4
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 1.2e-128 464.9 555 49.9
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 1.6e-125 454.5 767 42.4
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 2.3e-124 450.7 759 41.5
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 3.0e-124 450.3 729 42.5
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 6.2e-122 442.6 771 40.9
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 1.8e-121 441.0 762 40.4
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 9.0e-121 438.7 738 42.5
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 8.4e-119 432.2 699 41.5
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 1.1e-118 431.8 663 44.5
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.1e-118 431.8 737 44.2
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 1.5e-115 421.4 747 39.9
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 2.9e-111 407.1 782 40.0
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 5.1e-108 396.4 734 40.6
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 8.7e-108 395.6 719 39.1
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.1e-107 395.2 754 41.8
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 1.5e-107 394.8 763 37.5
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 3.3e-107 393.7 761 38.2
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 9.6e-107 392.1 379 60.7
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 3.1e-105 387.1 721 39.5
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 2.6e-104 384.0 667 40.3
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 3.4e-104 383.6 725 38.6
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 5.9e-104 382.9 696 39.7
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 5.9e-104 382.9 619 41.4
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 1.0e-103 382.1 765 37.9
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 6.5e-103 379.4 770 37.4
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 8.4e-103 379.0 716 38.4
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 5.5e-102 376.3 702 39.6
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 9.3e-102 375.6 766 37.5
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 9.3e-102 375.6 707 38.8
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 2.1e-101 374.4 717 39.6
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 2.7e-101 374.0 765 37.1
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 3.5e-101 373.6 772 36.8
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 3.0e-100 370.5 721 39.1
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.1e-99 368.6 738 38.2
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 1.1e-99 368.6 772 36.5
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 1.5e-99 368.2 521 47.0
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 5.7e-99 366.3 658 39.5
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 4.8e-98 363.2 742 37.1
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 2.4e-97 360.9 541 40.9
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 1.7e-95 354.8 716 37.2
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 5.0e-95 353.2 732 37.2
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 5.0e-95 353.2 732 37.2
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 2.7e-93 347.4 764 36.3
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 3.6e-93 347.1 560 44.3
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.0e-92 345.5 704 37.5
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.5e-91 341.7 705 37.6
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 1.5e-91 341.7 746 36.7
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 3.3e-91 340.5 580 40.5
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 8.2e-90 335.9 750 37.2
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 4.1e-89 333.6 718 36.4
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 1.2e-88 332.0 868 34.6
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 3.4e-88 330.5 462 43.3
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 6.5e-87 326.2 693 37.8
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 8.5e-87 325.9 742 36.3
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 1.2e-85 322.0 753 35.3
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 1.2e-85 322.0 537 41.5
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 4.7e-85 320.1 743 36.1
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 6.1e-85 319.7 665 35.9
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 3.0e-84 317.4 743 35.9
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 8.2e-82 309.3 694 36.2
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 5.3e-81 306.6 453 42.6
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 4.5e-80 303.5 397 46.1
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 5.9e-80 303.1 706 34.7
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 3.8e-79 300.4 756 34.0
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 6.5e-79 299.7 756 34.4
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 8.5e-79 299.3 518 41.7
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 9.1e-73 279.3 314 57.0
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 7.7e-72 276.2 429 42.4
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 8.8e-68 262.7 369 43.4
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 5.0e-55 220.3 367 39.2
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 3.3e-54 217.6 234 52.6
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.2e-53 215.7 537 35.9
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 2.0e-48 198.4 384 41.7
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 7.8e-48 196.4 328 44.2
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 7.8e-48 196.4 491 33.4
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 8.6e-47 193.0 303 38.9
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 1.8e-44 185.3 382 39.3
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 9.8e-43 179.5 514 30.7
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 1.7e-42 178.7 689 27.9
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 2.2e-42 178.3 601 28.1
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 3.2e-41 174.5 373 35.9
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 4.1e-41 174.1 243 46.5
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 2.0e-40 171.8 456 34.9
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 1.7e-39 168.7 445 35.3
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 3.1e-36 157.9 795 25.9
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 3.2e-33 147.9 185 51.9
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 9.5e-30 136.3 412 32.0
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 5.2e-28 130.6 289 32.5
FAN08G2149 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.8e-26 124.4 309 37.9
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 1.7e-23 115.5 329 34.7
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 1.5e-19 102.4 221 41.2
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 1.3e-18 99.4 300 30.7
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 1.7e-15 89.0 274 33.6
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 6.6e-15 87.0 162 38.9
MBI18_g46978_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 2.5e-14 85.1 271 32.8
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 3.3e-14 84.7 83 56.6
TPR.G14651 Trifolium pratense HOM05D006063 ORTHO05D000023 1.6e-13 82.4 249 30.1
Dinv03778 Davidia involucrata HOM05D006063 ORTHO05D045100 5.3e-12 77.4 254 31.5
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 9.0e-12 76.6 301 30.2
Hma1.2p1_0153F.1_g067860 Hydrangea macrophylla HOM05D006063 ORTHO05D045100 5.8e-11 73.9 218 32.6
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 1.2e-08 66.2 48 75.0
C05p62940 Brassica napus HOM05D000005 ORTHO05D000449 7.9e-08 63.5 143 40.6
FAN04G1450 Fragaria x ananassa HOM05D006063 ORTHO05D000023 6.7e-07 60.5 50 62.0
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 1.9e-06 58.9 37 83.8


User provided reference genes

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