Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 7.6e-178 627.1 324 100.0
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 2.5e-120 436.0 340 72.9
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 2.2e-108 396.4 340 64.7
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 1.6e-98 363.6 341 60.1
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 4.7e-95 352.1 340 59.4
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.3e-94 349.7 340 59.4
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.5e-93 347.1 340 58.8
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.2e-92 343.2 340 58.5
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 6.8e-86 321.6 409 49.9
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 2.0e-82 310.1 328 53.7
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 2.0e-82 310.1 328 53.7
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 2.7e-82 309.7 328 54.3
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 5.0e-81 305.4 332 52.7
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.2e-79 300.8 332 52.1
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 1.6e-79 300.4 327 53.8
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 2.1e-79 300.1 343 52.5
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 1.4e-78 297.4 331 53.8
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 6.8e-78 295.0 327 51.7
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 9.8e-77 291.2 345 51.0
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 2.2e-76 290.0 328 53.0
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 2.2e-76 290.0 330 52.7
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 2.9e-76 289.7 324 51.2
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 4.9e-76 288.9 331 53.2
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 4.9e-76 288.9 330 53.0
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.1e-75 287.7 329 51.7
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 1.1e-75 287.7 344 50.0
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 4.1e-75 285.8 334 52.4
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 4.6e-74 282.3 328 50.9
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 4.6e-74 282.3 326 50.3
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 4.6e-74 282.3 295 54.6
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 1.3e-73 280.8 358 47.8
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.3e-73 280.8 336 49.7
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 8.6e-73 278.1 326 50.0
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 8.6e-73 278.1 292 53.8
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 3.3e-72 276.2 326 49.7
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 2.8e-71 273.1 245 59.2
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.7e-71 272.3 285 54.0
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 4.7e-71 272.3 276 53.6
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 8.1e-71 271.6 330 50.0
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 8.1e-71 271.6 288 53.5
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 1.4e-70 270.8 327 49.5
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 1.4e-70 270.8 341 47.8
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 1.4e-70 270.8 243 60.5
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 3.1e-70 269.6 326 48.5
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 4.0e-70 269.2 288 52.8
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 6.8e-70 268.5 276 53.3
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 8.9e-70 268.1 279 54.1
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 2.0e-69 266.9 286 53.8
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 2.0e-69 266.9 274 54.0
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 2.0e-69 266.9 328 49.7
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 2.6e-69 266.5 290 54.1
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 3.4e-69 266.2 246 58.1
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 4.4e-69 265.8 331 47.7
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 5.8e-69 265.4 343 48.4
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 9.9e-69 264.6 276 54.0
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 1.7e-68 263.8 257 57.6
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 1.7e-68 263.8 248 56.5
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 3.7e-68 262.7 265 53.2
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 4.9e-68 262.3 325 48.6
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 8.3e-68 261.5 280 52.5
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 1.4e-67 260.8 292 51.7
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.9e-67 260.4 286 52.1
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 1.9e-67 260.4 340 47.1
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 3.2e-67 259.6 243 57.2
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 4.1e-67 259.2 244 58.6
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 9.2e-67 258.1 317 49.5
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 9.2e-67 258.1 329 48.6
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 9.2e-67 258.1 244 58.2
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 2.7e-66 256.5 302 49.7
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 2.7e-66 256.5 329 47.1
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 3.5e-66 256.1 288 53.1
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 4.6e-66 255.8 307 48.9
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 6.0e-66 255.4 254 56.3
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 7.8e-66 255.0 247 54.7
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 1.3e-65 254.2 321 46.7
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 1.3e-65 254.2 247 55.9
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 3.9e-65 252.7 319 47.0
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 5.1e-65 252.3 350 45.1
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 5.1e-65 252.3 278 51.1
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 6.6e-65 251.9 247 54.3
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 1.1e-64 251.1 264 52.7
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 4.3e-64 249.2 327 47.1
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 5.6e-64 248.8 290 48.3
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 7.3e-64 248.4 272 52.2
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 1.6e-63 247.3 247 53.8
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 2.1e-63 246.9 300 48.3
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 3.6e-63 246.1 274 50.7
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 1.4e-62 244.2 299 47.5
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 1.8e-62 243.8 247 53.8
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.8e-62 243.8 260 51.5
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 3.1e-62 243.0 280 48.6
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 4.0e-62 242.7 249 55.0
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 5.2e-62 242.3 278 48.9
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 6.8e-62 241.9 317 47.9
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 8.9e-62 241.5 247 51.8
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 8.9e-62 241.5 221 57.0
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.5e-61 240.7 235 55.3
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 2.0e-61 240.4 245 53.5
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.4e-61 239.6 291 50.9
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 4.4e-61 239.2 247 53.8
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 5.8e-61 238.8 256 53.1
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 9.9e-61 238.0 324 45.1
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 9.9e-61 238.0 324 45.1
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 9.9e-61 238.0 324 45.1
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 1.3e-60 237.7 277 49.1
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 1.7e-60 237.3 319 44.8
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 8.4e-60 235.0 245 53.9
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 2.4e-59 233.4 309 47.6
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 3.2e-59 233.0 244 52.0
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 6.6e-57 225.3 338 44.4
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 3.4e-53 213.0 267 47.2
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 3.2e-51 206.5 245 52.2
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.2e-50 204.5 225 53.3
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 4.6e-50 202.6 297 44.1
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.7e-49 200.7 431 34.8
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 8.7e-49 198.4 288 43.8
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.8e-47 193.4 115 73.9
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 6.9e-46 188.7 124 67.7
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 7.6e-45 185.3 238 48.3
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 1.4e-43 181.0 280 39.6
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 3.2e-43 179.9 220 50.5
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 6.0e-42 175.6 123 66.7
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.3e-41 173.7 123 66.7
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.4e-38 163.7 131 61.1
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 2.9e-36 156.8 242 41.3
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 1.9e-35 154.1 193 42.0
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 6.0e-34 149.1 199 43.7
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 5.3e-30 136.0 84 73.8
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 2.0e-29 134.0 195 45.6
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.9e-28 130.2 146 56.8
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 1.1e-27 128.3 123 48.0
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 7.9e-26 122.1 98 59.2
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 8.7e-25 118.6 205 41.5
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 1.1e-24 118.2 121 47.1
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 2.2e-23 114.0 222 38.7
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.3e-22 109.4 150 44.0
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 2.5e-19 100.5 142 44.4
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 1.0e-17 95.1 153 47.7
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 3.7e-15 86.7 80 66.2
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.3e-07 61.6 32 75.0
ATR0598G211 Amborella trichopoda HOM05D005134 ORTHO05D067863 7.0e-06 55.8 74 40.5


User provided reference genes

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