Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1209100 Malus domestica HOM05D002553 ORTHO05D002767 4.3e-231 804.3 399 100.0
RcHm_v2.0_Chr3g0454111 Rosa chinensis HOM05D002553 ORTHO05D002767 5.3e-165 584.7 398 75.6
FvH4_6g05341 Fragaria vesca HOM05D002553 ORTHO05D002767 5.7e-159 564.7 398 72.9
Prupe.6G330100 Prunus persica HOM05D002553 ORTHO05D002767 5.3e-157 558.1 353 81.6
FAN05G4192 Fragaria x ananassa HOM05D002553 ORTHO05D002767 2.5e-154 549.3 387 73.1
FAN05G5165 Fragaria x ananassa HOM05D002553 ORTHO05D002767 3.2e-154 548.9 387 72.9
FAN02G2444 Fragaria x ananassa HOM05D002553 ORTHO05D002767 3.6e-153 545.4 400 71.2
FAN14G0929 Fragaria x ananassa HOM05D002553 ORTHO05D002767 9.1e-141 504.2 381 69.6
CiPaw.07G014700 Carya illinoinensis HOM05D002553 ORTHO05D002767 8.5e-139 497.7 420 61.9
Haze_04234 Corylus avellana HOM05D002553 ORTHO05D002767 1.5e-135 486.9 397 64.0
Cfa006549 Carpinus fangiana HOM05D002553 ORTHO05D002767 4.4e-135 485.3 405 63.2
TWI56G0412 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 6.3e-134 481.5 390 62.1
Atru.chr2.474 Acer truncatum HOM05D002553 ORTHO05D002767 8.5e-131 471.1 393 62.1
QL03p004484 Quercus lobata HOM05D002553 ORTHO05D002767 1.5e-130 470.3 466 55.2
CSS0035336 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 5.5e-130 468.4 395 61.8
Duzib177G0165 Durio zibethinus HOM05D002553 ORTHO05D002767 7.2e-130 468.0 414 58.9
Gorai.004G243500 Gossypium raimondii HOM05D002553 ORTHO05D002767 3.6e-129 465.7 392 61.5
Gohir.D08G229300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 8.0e-129 464.5 388 61.9
Lj1g0019778 Lotus japonicus HOM05D002553 ORTHO05D002767 2.3e-128 463.0 409 57.7
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 3.0e-128 462.6 382 61.5
Potri.005G039000 Populus trichocarpa HOM05D002553 ORTHO05D002767 6.8e-128 461.5 423 57.7
Glyma.19G237200 Glycine max HOM05D002553 ORTHO05D002767 7.5e-127 458.0 397 59.4
arahy.Tifrunner.gnm1.ann1.NG2XET Arachis hypogaea HOM05D002553 ORTHO05D002767 9.8e-127 457.6 398 58.8
Phvul.006G093922 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 2.8e-126 456.1 397 59.9
Thecc.05G308100 Theobroma cacao HOM05D002553 ORTHO05D002767 6.3e-126 454.9 412 59.0
CANSAT25G3036 Cannabis sativa HOM05D002553 ORTHO05D002767 1.6e-124 450.3 395 60.3
Lalb_Chr15g0077101 Lupinus albus HOM05D002553 ORTHO05D002767 3.5e-124 449.1 396 58.8
arahy.Tifrunner.gnm1.ann1.Y4B2Z0 Arachis hypogaea HOM05D002553 ORTHO05D002767 1.0e-123 447.6 416 56.5
GSVIVG01000009001 Vitis vinifera HOM05D002553 ORTHO05D002767 3.3e-122 442.6 386 59.6
Ca_09373_v3 Cicer arietinum L. HOM05D002553 ORTHO05D002767 4.2e-122 442.2 397 56.2
Psat3g010200 Pisum sativum HOM05D002553 ORTHO05D002767 2.0e-119 433.3 391 56.8
Medtr7g113850 Medicago truncatula HOM05D002553 ORTHO05D002767 4.9e-118 428.7 391 56.5
Phvul.006G093933 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 1.8e-117 426.8 396 56.6
PGR031G3980 Punica granatum HOM05D002553 ORTHO05D002767 2.4e-117 426.4 383 57.2
Manes.09G163850 Manihot esculenta HOM05D002553 ORTHO05D002767 9.2e-117 424.5 425 54.8
THA.LOC104818678 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 9.2e-117 424.5 389 56.3
Rhsim05G0144400 Rhododendron simsii HOM05D002553 ORTHO05D002767 3.5e-116 422.5 408 55.9
Actinidia19805 Actinidia chinensis HOM05D002553 ORTHO05D002767 7.8e-116 421.4 402 56.2
Cc02_g32700 Coffea canephora HOM05D002553 ORTHO05D002767 5.0e-115 418.7 400 55.5
VMungo0540G2049 Vigna mungo HOM05D002553 ORTHO05D002767 3.3e-114 416.0 391 55.8
AL6G39610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 5.2e-112 408.7 383 56.4
TPR.G33193 Trifolium pratense HOM05D002553 ORTHO05D002767 1.5e-111 407.1 363 57.0
Cpa.g.sc48.13 Carica papaya HOM05D002553 ORTHO05D002767 2.0e-111 406.8 352 60.2
BcaNung04367 Brassica carinata HOM05D002553 ORTHO05D002767 3.4e-111 406.0 384 55.5
Aa31LG11G9180 Aethionema arabicum HOM05D002553 ORTHO05D002767 5.8e-111 405.2 383 55.6
Sabra05G0037600 Salix brachista HOM05D002553 ORTHO05D002767 1.3e-110 404.1 567 44.1
Carub.0006s2514 Capsella rubella HOM05D002553 ORTHO05D002767 2.2e-110 403.3 380 55.8
HanXRQChr14g0445961 Helianthus annuus HOM05D002553 ORTHO05D002767 2.2e-110 403.3 381 54.3
BcaNung02464 Brassica carinata HOM05D002553 ORTHO05D002767 6.4e-110 401.7 384 54.2
Nitab4.5_0001510g0020 Nicotiana tabacum HOM05D002553 ORTHO05D002767 1.9e-109 400.2 414 52.7
PSO210G0829 Papaver somniferum HOM05D002553 ORTHO05D002767 1.9e-109 400.2 415 52.3
Sopen10g005180 Solanum pennellii HOM05D002553 ORTHO05D002767 1.9e-109 400.2 388 52.8
COL.COLO4_13516 Corchorus olitorius HOM05D002553 ORTHO05D002767 2.4e-109 399.8 350 58.0
PSO832G1112 Papaver somniferum HOM05D002553 ORTHO05D002767 4.1e-109 399.1 420 51.2
Sc09g0003350 Simmondsia chinensis HOM05D002553 ORTHO05D002767 4.1e-109 399.1 406 53.0
DCAR_029434 Daucus carota HOM05D002553 ORTHO05D002767 5.4e-109 398.7 402 52.5
Solyc10g009400.3 Solanum lycopersicum HOM05D002553 ORTHO05D002767 5.4e-109 398.7 388 53.4
AUR62000868 Chenopodium quinoa HOM05D002553 ORTHO05D002767 7.0e-109 398.3 385 53.8
Nitab4.5_0000176g0030 Nicotiana tabacum HOM05D002553 ORTHO05D002767 2.0e-108 396.7 411 52.1
ECA238G2267 Erigeron canadensis HOM05D002553 ORTHO05D002767 4.6e-108 395.6 390 53.8
Sp2g20630 Schrenkiella parvula HOM05D002553 ORTHO05D002767 1.0e-107 394.4 384 54.4
AT5G27400 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 5.0e-107 392.1 383 54.0
Migut.M00920 Erythranthe guttata HOM05D002553 ORTHO05D002767 1.9e-106 390.2 391 53.5
MSTRG.16234 Avicennia marina HOM05D002553 ORTHO05D002767 2.8e-105 386.3 383 53.8
C07p40730 Brassica napus HOM05D002553 ORTHO05D002767 1.1e-104 384.4 375 53.6
BolC7t44601H Brassica oleracea HOM05D002553 ORTHO05D002767 1.1e-104 384.4 375 53.6
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 1.8e-104 383.6 369 55.6
CARHR186000 Cardamine hirsuta HOM05D002553 ORTHO05D002767 5.2e-104 382.1 384 52.9
Aqoxy1G02454 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 8.9e-104 381.3 417 48.2
Hma1.2p1_0666F.1_g199460 Hydrangea macrophylla HOM05D002553 ORTHO05D002767 1.7e-102 377.1 286 66.4
AT5G27410 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 4.9e-102 375.6 372 53.5
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 7.8e-100 368.2 376 52.9
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 7.8e-100 368.2 376 52.9
Dinv40259 Davidia involucrata HOM05D002553 ORTHO05D002767 7.8e-100 368.2 273 66.7
TAR633G1107 Trochodendron aralioides HOM05D002553 ORTHO05D002767 2.5e-98 363.2 383 53.5
ClCG02G016020 Citrullus lanatus HOM05D002553 ORTHO05D002767 9.5e-98 361.3 399 51.6
Gohir.A08G212300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 5.2e-96 355.5 310 61.0
SGA_v2.0_scaffold1G00162 Striga asiatica HOM05D002553 ORTHO05D002767 5.2e-96 355.5 396 51.0
ATR0626G345 Amborella trichopoda HOM05D002553 ORTHO05D002767 1.3e-94 350.9 421 48.9
AUR62005108 Chenopodium quinoa HOM05D002553 ORTHO05D002767 3.2e-93 346.3 341 54.0
CDE08G1662 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 4.1e-93 345.9 380 50.0
Lsat_1_v5_gn_2_67941 Lactuca sativa HOM05D002553 ORTHO05D002767 4.1e-93 345.9 376 48.9
Hund07046 Selenicereus undatus HOM05D002553 ORTHO05D002767 9.2e-93 344.7 390 50.0
Peaxi162Scf01441g00005 Petunia axillaris HOM05D002553 ORTHO05D002767 5.1e-91 339.0 501 40.9
MBI17_g29610_MAGBIO Magnolia biondii HOM05D002553 ORTHO05D002767 6.0e-84 315.5 390 45.6
Zm00001eb417780 Zea mays HOM05D002553 ORTHO05D002767 1.5e-82 310.8 387 45.0
Oeu057684.1 Olea europaea HOM05D002553 ORTHO05D002767 3.3e-82 309.7 396 45.7
HPP92_017205 Vanilla planifolia HOM05D002553 ORTHO05D002767 3.4e-79 299.7 381 46.5
Lj7C475G4 Lonicera japonica HOM05D002553 ORTHO05D002767 1.7e-78 297.4 380 45.8
Nn1g02088 Nelumbo nucifera HOM05D002553 ORTHO05D002767 1.1e-77 294.7 403 45.2
EL10Ac4g09309 Beta vulgaris HOM05D002553 ORTHO05D002767 7.9e-76 288.5 390 44.1
Sed0024851 Sechium edule HOM05D002553 ORTHO05D002767 1.2e-63 248.1 273 53.1
PGSC0003DMG400018888 Solanum tuberosum HOM05D002553 ORTHO05D002767 1.3e-62 244.6 401 38.9
unitig_32.g11004 Utricularia gibba HOM05D002553 ORTHO05D002767 3.0e-59 233.4 405 38.8
Pp3c27_4830 Physcomitrium patens HOM05D002553 ORTHO05D002767 1.3e-54 218.0 388 36.1
vmacro19642 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 1.1e-53 214.9 229 54.1
Mapoly0153s0022 Marchantia polymorpha HOM05D002553 ORTHO05D002767 1.3e-51 208.0 399 34.1
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 5.1e-51 206.1 379 34.8
vmacro19643 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 8.8e-43 178.7 198 50.0
Pp3c6_24550 Physcomitrium patens HOM05D002553 ORTHO05D002767 1.0e-35 155.2 351 30.8
Glyma.03G240200 Glycine max HOM05D002553 ORTHO05D002767 2.2e-30 137.5 166 48.2
CSS0010777 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 4.2e-29 133.3 107 61.7
CAN.G271.6 Capsicum annuum HOM05D000541 ORTHO05D000137 1.0e-27 128.6 160 44.4
SalBow8G2918 Salvia bowleyana HOM05D002553 ORTHO05D002767 3.8e-22 110.2 177 39.0
CSS0028745 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 1.9e-21 107.8 135 46.7
CAN.G271.7 Capsicum annuum HOM05D002553 ORTHO05D002767 3.2e-21 107.1 88 56.8
SEGI_18575 Sequoiadendron giganteum HOM05D002553 ORTHO05D002767 3.0e-19 100.5 155 39.4
AagrBONN_evm.TU.Sc2ySwM_368.1399 Anthoceros agrestis HOM05D002553 ORTHO05D002767 6.8e-19 99.4 184 33.2
CBR_g66786 Chara braunii HOM05D002553 ORTHO05D002767 1.3e-17 95.1 215 28.8
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 2.8e-17 94.0 194 33.5
Os05g0143200 Oryza sativa ssp. japonica HOM05D002553 ORTHO05D002767 3.8e-14 83.6 101 46.5
MCO08G105 Micromonas commoda HOM05D002553 ORTHO05D002767 5.2e-11 73.2 192 26.0
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 2.4e-08 64.3 147 31.3
SMO352G0077 Selaginella moellendorffii HOM05D001920 ORTHO05D004895 2.7e-07 60.8 144 32.6
Cc07_g11200 Coffea canephora HOM05D006745 ORTHO05D008449 3.5e-07 60.5 142 31.7
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 4.5e-07 60.1 133 33.1
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 4.5e-07 60.1 133 33.1
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 4.5e-07 60.1 133 33.1
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 4.5e-07 60.1 133 33.1
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 5.9e-07 59.7 229 31.0
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 5.9e-07 59.7 133 33.1
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 7.7e-07 59.3 176 29.0
Aa31LG6G12960 Aethionema arabicum HOM05D006469 ORTHO05D008034 1.0e-06 58.9 169 32.0
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 1.0e-06 58.9 208 29.3
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 1.0e-06 58.9 142 31.0
Gohir.A11G041100 Gossypium hirsutum HOM05D006745 ORTHO05D008449 1.0e-06 58.9 157 30.6
Gohir.D11G044400 Gossypium hirsutum HOM05D006745 ORTHO05D008449 1.0e-06 58.9 157 30.6
Gorai.007G047700 Gossypium raimondii HOM05D006745 ORTHO05D008449 1.0e-06 58.9 157 30.6
Lj2g0019069 Lotus japonicus HOM05D001602 ORTHO05D001470 1.0e-06 58.9 167 30.5
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 1.0e-06 58.9 149 31.5
arahy.Tifrunner.gnm1.ann1.DU2BQF Arachis hypogaea HOM05D006745 ORTHO05D008449 1.3e-06 58.5 158 29.7
arahy.Tifrunner.gnm1.ann1.EE1FTG Arachis hypogaea HOM05D006745 ORTHO05D008449 1.3e-06 58.5 158 29.7
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 1.3e-06 58.5 83 42.2
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 1.3e-06 58.5 133 32.3
Lj2g0007566 Lotus japonicus HOM05D006745 ORTHO05D008449 1.3e-06 58.5 144 33.3
Psat2g152400 Pisum sativum HOM05D006745 ORTHO05D008449 1.3e-06 58.5 188 29.8
TPR.G31348 Trifolium pratense HOM05D001602 ORTHO05D001470 1.3e-06 58.5 167 30.5
RcHm_v2.0_Chr2g0098641 Rosa chinensis HOM05D006745 ORTHO05D008449 1.7e-06 58.2 144 32.6
Sopen02g012910 Solanum pennellii HOM05D006745 ORTHO05D008449 1.7e-06 58.2 145 31.0
Glyma.16G128200 Glycine max HOM05D001602 ORTHO05D001470 2.3e-06 57.8 167 29.9
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 2.9e-06 57.4 149 28.9
DCAR_023133 Daucus carota HOM05D006745 ORTHO05D008449 2.9e-06 57.4 174 31.6
SEGI_27625 Sequoiadendron giganteum HOM05D001602 ORTHO05D001470 2.9e-06 57.4 141 32.6
Solyc02g061950.4 Solanum lycopersicum HOM05D006745 ORTHO05D008449 2.9e-06 57.4 144 33.3
Actinidia28725 Actinidia chinensis HOM05D006745 ORTHO05D008449 3.8e-06 57.0 145 29.0
BcaC04g22678 Brassica carinata HOM05D006745 ORTHO05D008449 3.8e-06 57.0 144 30.6
BolC9t54579H Brassica oleracea HOM05D006745 ORTHO05D008449 3.8e-06 57.0 144 30.6
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 3.8e-06 57.0 157 29.3
Carub.0007s0423 Capsella rubella HOM05D006469 ORTHO05D008034 3.8e-06 57.0 133 30.8
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 3.8e-06 57.0 147 32.7
Phvul.004G136600 Phaseolus vulgaris HOM05D001602 ORTHO05D001470 3.8e-06 57.0 217 27.6
AagrBONN_evm.TU.Sc2ySwM_228.5011 Anthoceros agrestis HOM05D001920 ORTHO05D004895 5.0e-06 56.6 145 31.0
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 5.0e-06 56.6 133 31.6
C06p34070 Brassica napus HOM05D001602 ORTHO05D001470 5.0e-06 56.6 167 31.1
FvH4_5g18590 Fragaria vesca HOM05D001602 ORTHO05D001470 5.0e-06 56.6 180 29.4
FAN04G0471 Fragaria x ananassa HOM05D001602 ORTHO05D001470 5.0e-06 56.6 180 29.4
FAN18G2659 Fragaria x ananassa HOM05D000219 ORTHO05D000226 5.0e-06 56.6 180 29.4
Glyma.01G163200 Glycine max HOM05D006745 ORTHO05D008449 5.0e-06 56.6 144 33.3
SGA_v2.0_scaffold77G25309 Striga asiatica HOM05D006745 ORTHO05D008449 5.0e-06 56.6 147 28.6
TPR.G25110 Trifolium pratense HOM05D006745 ORTHO05D008449 5.0e-06 56.6 181 29.3
AL2G11270 Arabidopsis lyrata HOM05D006745 ORTHO05D008449 6.6e-06 56.2 142 29.6
AT1G63855 Arabidopsis thaliana HOM05D006745 ORTHO05D008449 6.6e-06 56.2 127 31.5
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 6.6e-06 56.2 320 24.7
DCAR_005441 Daucus carota HOM05D001602 ORTHO05D001470 6.6e-06 56.2 166 29.5
Sed0008453 Sechium edule HOM05D006745 ORTHO05D008449 6.6e-06 56.2 142 28.9
AL2G33080 Arabidopsis lyrata HOM05D001602 ORTHO05D001470 8.6e-06 55.8 166 30.7
BolC6t38522H Brassica oleracea HOM05D001602 ORTHO05D001470 8.6e-06 55.8 167 30.5
Carub.0002s2007 Capsella rubella HOM05D001602 ORTHO05D001470 8.6e-06 55.8 167 30.5
Cfa006983 Carpinus fangiana HOM05D006469 ORTHO05D008034 8.6e-06 55.8 137 30.7
Ca_25281_v3 Cicer arietinum L. HOM05D001602 ORTHO05D001470 8.6e-06 55.8 166 29.5
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 8.6e-06 55.8 161 27.3
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 8.6e-06 55.8 146 31.5
Rhsim08G0031100 Rhododendron simsii HOM05D006745 ORTHO05D008449 8.6e-06 55.8 145 29.0
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 8.6e-06 55.8 222 28.4
PGSC0003DMG401023885 Solanum tuberosum HOM05D006745 ORTHO05D008449 8.6e-06 55.8 145 31.7


User provided reference genes

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