Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 3.6e-97 358.2 179 100.0
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 1.6e-84 316.2 179 86.6
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.0e-84 314.3 179 84.9
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.0e-84 314.3 179 84.9
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.3e-83 313.2 179 84.4
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.3e-83 313.2 179 83.8
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.3e-83 312.4 179 84.4
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.9e-83 311.6 179 83.2
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 1.5e-82 309.7 179 82.7
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 2.8e-81 305.4 179 83.2
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.4e-79 298.1 179 81.0
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 1.3e-75 286.6 171 81.9
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 8.7e-75 283.9 179 79.9
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 1.1e-74 283.5 178 79.2
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 9.6e-74 280.4 179 78.2
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 1.6e-73 279.6 173 80.3
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 1.6e-73 279.6 178 78.7
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 3.6e-73 278.5 179 76.5
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 4.8e-73 278.1 179 76.5
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 6.2e-73 277.7 179 78.2
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 6.2e-73 277.7 179 77.1
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 6.2e-73 277.7 179 78.2
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 6.2e-73 277.7 179 78.2
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.1e-72 276.9 179 77.1
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 1.4e-72 276.6 179 77.7
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 1.4e-72 276.6 178 78.7
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 2.4e-72 275.8 179 76.0
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 3.1e-72 275.4 178 78.1
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 5.3e-72 274.6 168 81.0
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 5.3e-72 274.6 179 76.0
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 5.3e-72 274.6 179 77.1
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 6.9e-72 274.2 178 75.8
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 6.9e-72 274.2 180 76.7
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.2e-71 273.5 180 76.7
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 2.0e-71 272.7 178 75.8
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 2.6e-71 272.3 178 75.8
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 3.4e-71 271.9 179 76.5
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 4.5e-71 271.6 179 74.9
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 4.5e-71 271.6 179 77.1
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 4.5e-71 271.6 176 77.3
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 5.8e-71 271.2 179 76.0
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 9.9e-71 270.4 179 75.4
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 9.9e-71 270.4 179 76.5
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 1.3e-70 270.0 177 74.6
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 1.7e-70 269.6 178 75.3
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.7e-70 269.6 180 75.0
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 2.2e-70 269.2 179 73.7
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 2.2e-70 269.2 171 77.8
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 2.9e-70 268.9 179 74.9
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 2.9e-70 268.9 179 76.5
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 2.9e-70 268.9 179 76.0
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 3.8e-70 268.5 179 76.0
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.8e-70 268.5 180 77.2
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 4.9e-70 268.1 179 74.9
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 6.4e-70 267.7 179 73.7
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 73.7
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 74.9
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 75.4
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.4e-69 265.8 179 75.4
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 73.2
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 74.3
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 74.3
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 9.3e-69 263.8 177 74.6
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 9.3e-69 263.8 179 74.3
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.2e-68 263.5 179 71.5
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 2.7e-68 262.3 180 72.8
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 2.7e-68 262.3 179 72.6
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 3.5e-68 261.9 169 77.5
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.8e-67 259.6 179 73.7
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 3.9e-67 258.5 179 72.6
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 5.1e-67 258.1 171 75.4
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 5.1e-67 258.1 179 74.9
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 5.1e-67 258.1 179 72.1
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 5.1e-67 258.1 173 74.6
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 5.1e-67 258.1 179 71.5
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 6.7e-67 257.7 179 72.6
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 6.7e-67 257.7 179 70.4
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.1e-66 256.9 179 73.2
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 1.1e-66 256.9 175 74.9
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 1.5e-66 256.5 175 74.3
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 1.9e-66 256.1 172 74.4
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 2.5e-66 255.8 178 72.5
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 3.3e-66 255.4 170 74.7
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 4.3e-66 255.0 179 71.5
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 4.3e-66 255.0 179 72.6
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 9.6e-66 253.8 179 72.1
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 9.6e-66 253.8 207 65.7
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.3e-65 253.4 175 72.0
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.6e-65 253.1 179 72.1
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 1.6e-65 253.1 170 73.5
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 1.6e-65 253.1 179 69.8
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 1.6e-65 253.1 165 75.8
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 2.1e-65 252.7 170 73.5
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 2.8e-65 252.3 177 71.8
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 3.7e-65 251.9 179 70.9
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 8.1e-65 250.8 169 74.0
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 8.1e-65 250.8 169 75.1
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 1.1e-64 250.4 179 72.1
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 1.1e-64 250.4 179 69.3
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 1.4e-64 250.0 166 75.3
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 1.8e-64 249.6 169 73.4
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 4.0e-64 248.4 170 71.8
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 4.0e-64 248.4 170 72.4
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 5.3e-64 248.1 170 71.2
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 5.3e-64 248.1 169 73.4
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 5.3e-64 248.1 221 62.4
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 1.2e-63 246.9 186 68.3
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 1.5e-63 246.5 169 73.4
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 4.5e-63 245.0 146 81.5
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 7.6e-63 244.2 165 73.9
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.3e-62 243.4 166 72.9
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 1.7e-62 243.0 179 68.2
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 2.2e-62 242.7 157 77.7
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 6.5e-62 241.1 170 70.6
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 2.5e-61 239.2 167 71.9
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 4.6e-60 235.0 171 70.2
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 7.9e-60 234.2 172 69.2
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 2.3e-59 232.6 172 69.2
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 3.0e-59 232.3 172 69.8
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.5e-58 229.9 201 62.2
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 1.9e-58 229.6 179 68.7
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.8e-57 224.9 160 70.0
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 5.3e-56 221.5 150 74.0
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 1.5e-55 219.9 168 69.0
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 1.5e-55 219.9 150 73.3
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 1.3e-54 216.9 169 63.9
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 1.9e-53 213.0 179 63.7
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 1.8e-48 196.4 118 83.9
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 4.5e-47 191.8 162 58.6
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 7.7e-47 191.0 120 79.2
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.3e-46 190.3 170 61.8
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 5.5e-45 184.9 179 53.6
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 4.6e-44 181.8 169 60.9
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.8e-43 179.9 116 77.6
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 8.8e-43 177.6 165 55.8
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 2.5e-42 176.0 175 53.1
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 4.3e-42 175.3 169 51.5
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 2.4e-40 169.5 116 72.4
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 1.1e-37 160.6 117 72.6
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 6.1e-36 154.8 221 43.0
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.8e-35 153.3 160 54.4
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 3.9e-35 152.1 167 49.7
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 2.0e-34 149.8 171 48.5
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 5.7e-34 148.3 163 48.5
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 5.7e-34 148.3 195 48.7
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 2.4e-32 142.9 105 69.5
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 7.0e-32 141.4 86 80.2
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 3.5e-31 139.0 83 79.5
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 5.9e-31 138.3 97 71.1
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 1.5e-29 133.7 82 76.8
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.6e-28 130.2 98 70.4
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 2.7e-28 129.4 144 52.1
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.4e-27 127.1 94 69.1
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 1.3e-25 120.6 86 68.6
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 6.3e-25 118.2 93 64.5
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 2.5e-21 106.3 75 72.0
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 4.7e-20 102.1 85 61.2
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 8.8e-19 97.8 144 45.1
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 4.5e-15 85.5 216 34.3
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 5.5e-13 78.6 71 57.7
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 1.3e-09 67.4 85 48.2
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 1.3e-09 67.4 50 60.0
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 3.7e-09 65.9 56 58.9
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 1.1e-08 64.3 42 71.4
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 1.2e-07 60.8 146 34.2


User provided reference genes

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