Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 5.6e-212 740.7 388 100.0
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 2.8e-195 685.3 386 92.0
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 9.0e-194 680.2 388 90.5
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 4.5e-177 624.8 388 82.0
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 1.9e-175 619.4 388 81.2
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 3.9e-173 611.7 388 80.9
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 4.4e-172 608.2 388 80.2
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 1.7e-171 606.3 387 80.9
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 1.3e-168 596.7 388 78.9
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 2.9e-168 595.5 388 78.9
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.0e-168 594.7 388 79.1
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 5.5e-167 591.3 388 78.4
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 1.2e-166 590.1 388 79.1
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.7e-166 589.0 388 78.4
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 8.8e-165 583.9 388 77.3
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 8.8e-165 583.9 388 76.5
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 2.0e-164 582.8 388 78.1
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 5.7e-164 581.3 388 77.8
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 7.4e-164 580.9 388 76.0
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 7.4e-164 580.9 388 76.0
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.3e-163 580.1 390 77.2
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.8e-163 578.2 420 73.1
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.4e-162 575.9 420 73.1
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 3.1e-162 575.5 388 75.8
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 5.3e-162 574.7 388 75.5
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 3.5e-161 572.0 388 75.5
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 4.5e-161 571.6 386 74.9
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.5e-161 571.6 420 72.9
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.3e-160 570.1 420 72.1
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.9e-160 568.9 388 76.5
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 5.0e-160 568.2 389 76.1
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 6.5e-160 567.8 385 75.1
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 1.5e-159 566.6 387 75.7
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.9e-159 566.2 389 75.8
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 1.9e-159 566.2 388 75.5
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 2.5e-159 565.8 385 75.1
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 3.2e-159 565.5 385 75.1
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 5.5e-159 564.7 388 75.0
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 5.5e-159 564.7 383 74.9
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 3.6e-158 562.0 388 75.3
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 4.7e-158 561.6 386 74.1
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 8.8e-157 557.4 385 74.3
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 3.3e-156 555.4 376 75.0
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 5.7e-156 554.7 388 73.5
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 7.5e-156 554.3 386 73.3
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 1.3e-155 553.5 389 74.6
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 2.2e-155 552.7 388 74.0
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 6.3e-155 551.2 388 73.7
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 8.2e-155 550.8 386 72.5
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 8.2e-155 550.8 388 72.9
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 4.1e-154 548.5 386 73.1
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 7.0e-154 547.7 389 74.6
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 9.1e-154 547.4 388 73.2
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 1.2e-153 547.0 388 73.2
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 2.0e-153 546.2 393 74.0
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 2.7e-153 545.8 406 71.2
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 5.9e-153 544.7 389 74.0
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 3.8e-152 542.0 388 72.9
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 8.5e-152 540.8 390 73.6
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 1.1e-151 540.4 390 73.3
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 1.1e-151 540.4 383 72.8
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.5e-151 539.3 383 72.6
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 2.1e-150 536.2 388 72.9
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 2.1e-150 536.2 388 72.9
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 2.1e-150 536.2 387 71.8
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.1e-150 536.2 384 72.9
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 2.7e-150 535.8 387 71.3
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 3.6e-150 535.4 390 72.1
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 6.1e-150 534.6 387 70.5
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.5e-148 530.0 388 72.7
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 5.7e-148 528.1 388 72.2
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 9.8e-148 527.3 395 69.1
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 9.8e-148 527.3 350 77.4
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.3e-147 526.9 414 69.1
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 1.4e-146 523.5 388 71.4
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.8e-146 523.1 388 71.1
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 3.1e-146 522.3 349 76.2
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 1.6e-145 520.0 383 70.5
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 2.0e-145 519.6 389 70.4
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.5e-143 513.5 383 70.8
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 1.5e-143 513.5 388 68.0
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 5.5e-143 511.5 392 69.6
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.8e-142 509.2 348 75.3
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 4.7e-142 508.4 385 70.9
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 8.0e-142 507.7 388 68.0
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 1.4e-141 506.9 387 69.3
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 6.8e-141 504.6 386 70.5
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 6.8e-141 504.6 386 69.7
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 2.0e-140 503.1 386 68.9
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 2.6e-140 502.7 386 69.7
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 2.6e-140 502.7 386 69.7
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 4.4e-140 501.9 386 67.6
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 1.3e-139 500.4 388 68.8
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.8e-139 499.2 388 67.0
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.1e-138 497.3 386 69.2
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 1.4e-138 496.9 386 68.7
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 1.8e-138 496.5 386 68.7
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 1.8e-138 496.5 348 73.6
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 4.1e-138 495.4 388 66.8
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 5.4e-138 495.0 388 66.8
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 1.6e-137 493.4 385 68.8
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 3.5e-137 492.3 386 67.6
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 5.0e-136 488.4 386 67.4
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 8.0e-134 481.1 353 72.2
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 2.0e-132 476.5 385 67.0
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 2.6e-132 476.1 385 66.5
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 4.4e-132 475.3 347 70.9
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 9.8e-132 474.2 385 66.5
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 4.6e-129 465.3 400 63.2
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 1.7e-128 463.4 385 65.7
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 2.0e-124 449.9 382 63.4
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 4.4e-124 448.7 387 64.3
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 6.4e-123 444.9 390 63.8
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.4e-122 443.0 390 62.1
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 6.0e-121 438.3 388 59.8
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 3.0e-120 436.0 394 59.4
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 5.6e-119 431.8 392 58.4
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 2.2e-115 419.9 388 59.8
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 4.9e-115 418.7 377 59.2
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 2.4e-114 416.4 397 58.7
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 7.1e-114 414.8 399 57.4
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 4.4e-108 395.6 388 58.2
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 1.6e-102 377.1 297 63.3
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 6.0e-97 358.6 271 69.4
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 6.6e-96 355.1 413 48.2
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 5.3e-93 345.5 297 65.3
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 2.1e-86 323.6 438 44.5
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 5.5e-82 308.9 368 46.5
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 7.1e-82 308.5 226 69.9
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 3.4e-76 289.7 266 56.8
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 5.5e-74 282.3 391 43.5
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 4.1e-61 239.6 466 36.1
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 2.6e-55 220.3 167 69.5
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 5.9e-52 209.1 243 47.7
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.7e-51 207.6 151 76.8
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 4.2e-50 203.0 142 75.4
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 1.7e-46 191.0 128 76.6
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.5e-42 177.9 173 59.0
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 9.4e-34 148.7 392 30.1
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 9.4e-34 148.7 89 84.3
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 1.1e-29 135.2 166 47.0
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 4.1e-29 133.3 149 54.4
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.0e-27 128.6 108 61.1
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 7.2e-26 122.5 79 75.9
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 9.5e-26 122.1 155 50.3
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 4.7e-25 119.8 213 37.6
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 2.0e-23 114.4 138 52.9
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 3.2e-21 107.1 120 52.5
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 2.5e-18 97.4 83 59.0
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 4.0e-16 90.1 127 48.8
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 1.5e-15 88.2 99 52.5
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 1.5e-15 88.2 127 47.2
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 1.5e-15 88.2 106 47.2
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 3.4e-15 87.0 82 56.1
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 7.0e-13 79.3 44 88.6
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.6e-12 78.2 54 66.7
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 2.0e-12 77.8 83 51.8
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 4.6e-12 76.6 125 44.0
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 6.0e-12 76.3 100 49.0
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 1.7e-11 74.7 42 85.7
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 1.1e-10 72.0 75 48.0
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 8.1e-09 65.9 49 61.2
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 6.8e-08 62.8 83 45.8
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 1.5e-07 61.6 36 88.9
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 4.4e-07 60.1 38 76.3
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 2.9e-06 57.4 38 71.1
TPR.G33192 Trifolium pratense HOM05D004239 ORTHO05D410682 8.3e-06 55.8 78 51.3


User provided reference genes

Program Settings