Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 0.0e+00 1861.7 1008 100.0
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 0.0e+00 1485.7 1012 81.1
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 0.0e+00 1171.0 1048 65.6
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 2.3e-257 892.9 1059 53.1
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 7.4e-256 887.9 1084 52.2
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 7.4e-256 887.9 1084 52.0
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.1e-254 882.5 1089 51.8
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 5.3e-254 881.7 1051 53.4
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 3.0e-249 865.9 939 55.7
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.2e-243 845.9 1039 52.4
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.6e-237 826.2 1046 51.1
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 2.4e-174 617.1 1078 40.4
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 3.9e-172 609.8 1082 40.7
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 3.9e-156 556.6 988 39.9
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 6.1e-141 506.1 1060 39.0
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 8.7e-140 502.3 1080 38.9
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 1.1e-139 501.9 1054 38.1
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 3.3e-139 500.4 1042 40.9
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 3.3e-139 500.4 1053 38.5
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 2.8e-138 497.3 1046 39.7
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 6.3e-138 496.1 1073 37.7
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 6.3e-138 496.1 1099 36.7
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 1.4e-137 495.0 1086 36.0
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 6.9e-137 492.7 1066 38.8
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.1e-134 485.3 1041 36.4
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 4.2e-134 483.4 1055 39.0
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 2.1e-133 481.1 1051 36.4
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.1e-133 481.1 1078 36.9
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 1.0e-132 478.8 1074 36.5
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.4e-132 478.4 1050 36.3
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 1.8e-132 478.0 1043 36.3
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 2.3e-132 477.6 1064 36.7
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 7.7e-128 462.6 1057 36.0
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.7e-127 461.5 1047 38.7
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 1.1e-126 458.8 1051 35.5
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 2.6e-123 447.6 580 46.7
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 2.9e-119 434.1 612 44.6
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 3.6e-117 427.2 1086 36.2
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 2.2e-111 407.9 1043 35.2
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.9e-110 404.8 1098 33.1
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 6.8e-108 396.4 973 33.3
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 2.6e-107 394.4 1133 33.0
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 1.7e-106 391.7 1129 33.2
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 2.2e-106 391.3 1095 34.7
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 1.8e-105 388.3 1073 31.9
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 1.2e-104 385.6 771 36.3
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 5.9e-104 383.3 1099 32.9
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 7.7e-104 382.9 1120 32.9
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 1.0e-103 382.5 1013 32.7
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 1.9e-102 378.3 1030 34.7
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 4.2e-102 377.1 1071 31.3
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 7.2e-102 376.3 1045 35.0
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 2.7e-101 374.4 1085 34.6
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 2.7e-101 374.4 1075 31.5
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 2.7e-101 374.4 753 37.1
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 4.7e-101 373.6 1015 33.1
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 2.2e-98 364.8 743 37.6
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 4.9e-98 363.6 1163 31.9
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 4.1e-97 360.5 1064 30.8
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 5.9e-96 356.7 633 39.0
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 2.9e-95 354.4 706 36.0
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 2.5e-94 351.3 1072 30.8
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 3.2e-89 334.3 743 34.6
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 4.1e-89 334.0 735 35.0
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 1.6e-88 332.0 712 35.4
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 6.6e-87 326.6 1027 30.7
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 8.6e-87 326.2 605 38.0
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.1e-86 325.9 1044 30.8
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 4.3e-86 323.9 772 34.7
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 1.2e-85 322.4 1081 30.3
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 2.3e-84 318.2 1040 29.6
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 6.8e-84 316.6 642 37.5
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 4.4e-83 313.9 1061 29.3
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 6.4e-82 310.1 576 37.0
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 1.9e-81 308.5 1031 29.4
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 1.2e-80 305.8 582 39.0
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 2.5e-78 298.1 648 34.7
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 3.3e-78 297.7 1062 30.1
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 1.4e-76 292.4 535 37.6
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 1.2e-75 289.3 374 44.7
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 2.2e-74 285.0 515 37.5
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 3.7e-74 284.3 1054 28.2
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 8.3e-74 283.1 715 32.9
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 3.2e-73 281.2 374 43.9
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 3.9e-71 274.2 1050 28.4
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 1.1e-70 272.7 694 33.7
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 4.0e-68 264.2 717 30.1
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 6.8e-68 263.5 864 30.6
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 1.5e-67 262.3 1031 28.7
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 9.9e-67 259.6 754 30.9
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 1.3e-66 259.2 756 31.0
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 2.9e-66 258.1 1061 28.5
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 1.1e-65 256.1 766 30.2
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 7.1e-65 253.4 783 30.3
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 1.6e-64 252.3 766 30.3
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 1.5e-62 245.7 775 29.7
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 2.8e-61 241.5 1030 27.0
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 2.9e-58 231.5 183 59.6
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 1.6e-56 225.7 370 37.8
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 9.6e-54 216.5 381 37.3
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 9.6e-54 216.5 750 30.5
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 2.2e-42 178.7 516 28.3
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 4.9e-42 177.6 178 49.4
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 3.5e-40 171.4 493 28.8
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 4.3e-38 164.5 384 29.9
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 1.3e-37 162.9 377 31.6
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 3.2e-33 148.3 224 42.9
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 9.3e-33 146.7 240 32.9
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 4.6e-32 144.4 291 35.7
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 1.3e-31 142.9 307 38.1
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 2.3e-31 142.1 307 38.1
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 3.7e-29 134.8 356 30.1
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 4.8e-21 107.8 94 54.3
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 6.3e-21 107.5 256 32.0
FvH4_3g29010 Fragaria vesca HOM05D006048 ORTHO05D035641 3.8e-18 98.2 249 36.1
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 5.0e-10 71.2 124 37.9
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 2.5e-09 68.9 519 23.3
CDE05G3494 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 6.7e-07 60.8 170 30.6
Lj9A29G6 Lonicera japonica HOM05D006048 ORTHO05D007642 1.5e-06 59.7 113 38.1
Atru.chr2.431 Acer truncatum HOM05D006048 ORTHO05D007642 2.6e-06 58.9 192 32.3


User provided reference genes

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