Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 1.3e-255 885.9 484 100.0
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 5.9e-227 790.8 488 87.9
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 2.9e-197 692.2 486 79.6
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.0e-170 604.0 441 69.6
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 3.0e-170 602.4 492 66.3
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.9e-170 602.1 451 70.3
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 4.5e-166 588.6 409 70.7
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 3.8e-165 585.5 389 75.3
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 2.3e-162 576.2 499 63.3
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 4.8e-160 568.5 390 71.3
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 3.1e-159 565.8 441 68.3
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 4.0e-159 565.5 391 71.6
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 6.4e-157 558.1 493 62.5
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 7.4e-153 544.7 421 69.6
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 2.8e-152 542.7 481 60.9
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 3.4e-150 535.8 444 64.0
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.7e-149 533.5 482 59.3
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 2.2e-149 533.1 448 62.3
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 3.3e-145 519.2 483 60.5
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 3.3e-145 519.2 482 61.0
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 4.3e-145 518.8 488 59.2
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 1.6e-144 516.9 487 58.5
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 2.2e-144 516.5 446 60.3
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 6.3e-144 515.0 491 58.2
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 3.1e-143 512.7 429 62.7
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 6.9e-143 511.5 422 62.3
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 2.0e-142 510.0 425 61.6
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 5.9e-142 508.4 450 62.2
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 5.9e-142 508.4 498 61.2
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 2.2e-141 506.5 443 58.7
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 1.4e-140 503.8 433 62.8
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 5.5e-140 501.9 407 63.9
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 9.4e-140 501.1 431 59.2
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 9.4e-140 501.1 494 55.5
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 1.2e-139 500.7 487 58.1
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 1.6e-139 500.4 493 59.4
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 2.1e-139 500.0 480 59.4
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 2.1e-139 500.0 427 61.8
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 1.0e-138 497.7 361 69.0
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 8.8e-138 494.6 481 56.8
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 1.3e-136 490.7 482 56.0
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 3.7e-136 489.2 432 62.7
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 4.8e-136 488.8 433 60.7
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 4.8e-136 488.8 381 64.3
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 8.2e-136 488.0 438 58.7
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 3.1e-135 486.1 481 54.3
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 6.9e-135 485.0 390 64.1
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 1.2e-134 484.2 487 55.2
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 1.5e-134 483.8 457 54.3
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 2.0e-134 483.4 436 56.4
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 5.9e-134 481.9 436 56.4
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 1.7e-133 480.3 426 58.0
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 1.7e-133 480.3 426 58.0
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 2.2e-133 479.9 481 52.8
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 3.8e-133 479.2 426 60.1
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 6.5e-133 478.4 434 57.4
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 1.1e-132 477.6 431 58.9
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 3.2e-132 476.1 481 52.4
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 3.2e-132 476.1 481 52.4
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 9.4e-132 474.6 495 52.5
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 2.7e-131 473.0 429 55.7
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 3.6e-131 472.6 435 57.9
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 5.1e-130 468.8 486 54.5
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 2.0e-129 466.8 442 56.8
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 4.4e-129 465.7 443 54.6
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 8.2e-128 461.5 441 55.3
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 5.3e-127 458.8 426 56.1
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 1.2e-126 457.6 434 56.2
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 3.4e-126 456.1 359 62.4
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 3.8e-125 452.6 420 58.8
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 4.2e-124 449.1 485 51.8
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.6e-123 447.2 431 54.5
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 2.1e-123 446.8 428 55.1
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 8.0e-123 444.9 404 55.4
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 3.9e-122 442.6 345 63.5
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 1.4e-119 434.1 444 54.3
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 4.1e-119 432.6 432 52.3
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 2.5e-116 423.3 472 51.9
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 2.7e-115 419.9 354 59.0
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 2.7e-115 419.9 354 59.0
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 3.6e-115 419.5 352 59.1
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 1.0e-114 417.9 354 62.7
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 8.2e-112 408.3 358 59.2
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 2.4e-111 406.8 406 54.2
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 1.6e-110 404.1 456 49.1
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 3.5e-110 402.9 398 52.5
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 2.3e-106 390.2 343 58.6
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 5.2e-106 389.0 421 50.1
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 1.5e-105 387.5 406 52.5
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 3.7e-104 382.9 342 59.4
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 1.3e-101 374.4 330 55.5
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 3.3e-100 369.8 425 45.9
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 1.5e-89 334.3 316 59.5
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 8.9e-82 308.5 336 50.9
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.3e-80 304.7 274 55.1
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 3.0e-69 266.9 435 37.2
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 3.3e-60 236.9 185 61.6
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 7.3e-60 235.7 319 42.9
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 1.8e-58 231.1 453 30.9
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 1.1e-55 221.9 402 35.8
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 5.4e-55 219.5 349 37.0
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 5.3e-50 203.0 295 42.7
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 1.3e-48 198.4 197 54.3
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 7.9e-46 189.1 492 34.1
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 9.9e-41 172.2 385 32.7
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 1.5e-36 158.3 185 51.9
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 7.6e-33 146.0 175 50.3
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.9e-31 141.4 176 48.9
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 1.9e-31 141.4 178 42.7
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 6.7e-13 79.7 55 67.3
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 8.8e-13 79.3 83 69.9
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 4.1e-10 70.5 78 64.1
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 5.3e-10 70.1 91 53.8
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 7.0e-10 69.7 86 64.0
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.2e-09 68.9 91 52.7
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 3.5e-09 67.4 85 47.1
RhsimUnG0226800 Rhododendron simsii HOM05D006774 ORTHO05D008411 4.5e-09 67.0 92 57.6
Cpa.g.sc8.44 Carica papaya HOM05D007239 ORTHO05D003473 2.1e-06 58.2 70 44.3
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 4.7e-06 57.0 61 50.8


User provided reference genes

Program Settings