Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1198900 Malus domestica HOM05D004009 ORTHO05D004617 5.6e-41 170.6 93 100.0
MD12G1212100 Malus domestica HOM05D004009 ORTHO05D004617 1.6e-40 169.1 93 98.9
Prupe.2G141100 Prunus persica HOM05D004009 ORTHO05D004617 1.2e-38 162.9 93 94.6
FvH4_1g25940 Fragaria vesca HOM05D004009 ORTHO05D004617 4.4e-38 161.0 93 92.5
FAN19G2016 Fragaria x ananassa HOM05D004009 ORTHO05D004617 4.4e-38 161.0 93 92.5
FAN26G3151 Fragaria x ananassa HOM05D004009 ORTHO05D004617 4.4e-38 161.0 93 92.5
FAN28G1886 Fragaria x ananassa HOM05D004009 ORTHO05D004617 4.4e-38 161.0 93 92.5
RcHm_v2.0_Chr6g0270961 Rosa chinensis HOM05D004009 ORTHO05D004617 4.4e-38 161.0 93 92.5
Prupe.6G319700 Prunus persica HOM05D004009 ORTHO05D004617 9.8e-38 159.8 93 92.5
FAN10G0557 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.4e-36 156.0 93 89.2
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 2.4e-36 155.2 93 90.3
Cfa006638 Carpinus fangiana HOM05D004009 ORTHO05D004617 3.2e-36 154.8 93 89.2
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 4.1e-36 154.5 93 90.3
Ca_06468_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 7.0e-36 153.7 93 89.2
QL02p014701 Quercus lobata HOM05D004009 ORTHO05D004617 1.6e-35 152.5 92 87.0
Eucgr.F00277 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.0e-35 152.1 93 89.2
Eucgr.F00508 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.0e-35 152.1 93 89.2
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 2.0e-35 152.1 93 89.2
PGR004G0595 Punica granatum HOM05D004009 ORTHO05D004617 2.0e-35 152.1 93 88.2
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 2.7e-35 151.8 93 88.2
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 2.7e-35 151.8 93 88.2
Duzib128G0284 Durio zibethinus HOM05D004009 ORTHO05D004617 2.7e-35 151.8 93 90.3
Haze_04129 Corylus avellana HOM05D004009 ORTHO05D004617 4.6e-35 151.0 93 87.1
Thecc.05G314000 Theobroma cacao HOM05D004009 ORTHO05D004617 4.6e-35 151.0 93 89.2
Sp1g06410 Schrenkiella parvula HOM05D004009 ORTHO05D004617 1.0e-34 149.8 93 83.9
Aqoxy2G02931 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 1.3e-34 149.4 93 87.1
Ca_11219_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 1.3e-34 149.4 93 84.9
Gohir.D08G225500 Gossypium hirsutum HOM05D004009 ORTHO05D004617 1.3e-34 149.4 93 88.2
Gorai.004G239500 Gossypium raimondii HOM05D004009 ORTHO05D004617 1.3e-34 149.4 93 88.2
Lj3g0001996 Lotus japonicus HOM05D004009 ORTHO05D004617 1.7e-34 149.1 93 87.1
Lalb_Chr04g0247211 Lupinus albus HOM05D004009 ORTHO05D004617 1.7e-34 149.1 93 83.9
Sp2g20940 Schrenkiella parvula HOM05D004009 ORTHO05D004617 1.7e-34 149.1 93 84.9
Carub.0006s2476 Capsella rubella HOM05D004009 ORTHO05D004617 2.3e-34 148.7 93 82.8
Medtr1g114200 Medicago truncatula HOM05D004009 ORTHO05D004617 2.3e-34 148.7 93 86.0
Phvul.008G286800 Phaseolus vulgaris HOM05D004009 ORTHO05D004617 2.3e-34 148.7 93 87.1
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 2.3e-34 148.7 93 86.0
Zm00001eb088470 Zea mays HOM05D004009 ORTHO05D004617 2.3e-34 148.7 93 84.9
Gohir.A08G208600 Gossypium hirsutum HOM05D004009 ORTHO05D004617 3.0e-34 148.3 93 88.2
Nn5g27800 Nelumbo nucifera HOM05D004009 ORTHO05D004617 3.0e-34 148.3 93 87.1
BcaNung04749 Brassica carinata HOM05D004009 ORTHO05D004617 3.9e-34 147.9 93 82.8
CiPaw.07G022500 Carya illinoinensis HOM05D004009 ORTHO05D004617 3.9e-34 147.9 93 86.0
Thhalv10005162m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 3.9e-34 147.9 93 82.8
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 3.9e-34 147.9 93 86.0
ClCG04G003110 Citrullus lanatus HOM05D004009 ORTHO05D004617 5.0e-34 147.5 93 86.0
ClCG11G000240 Citrullus lanatus HOM05D004009 ORTHO05D004617 5.0e-34 147.5 93 86.0
MELO3C024644.2 Cucumis melo HOM05D004009 ORTHO05D004617 5.0e-34 147.5 93 86.0
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 5.0e-34 147.5 93 84.9
Aa31LG11G9540 Aethionema arabicum HOM05D004009 ORTHO05D004617 6.6e-34 147.1 93 83.9
BraA02t08853Z Brassica rapa HOM05D004009 ORTHO05D004617 6.6e-34 147.1 93 82.8
Eucgr.F00290 Eucalyptus grandis HOM05D004009 ORTHO05D004617 6.6e-34 147.1 93 86.0
BcaB04g19687 Brassica carinata HOM05D004009 ORTHO05D004617 8.6e-34 146.7 93 80.6
Thhalv10000673m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 1.1e-33 146.4 93 80.6
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 1.1e-33 146.4 93 83.9
Manes.09G171300 Manihot esculenta HOM05D004009 ORTHO05D004617 1.1e-33 146.4 93 86.0
Ah.06g189870 Amaranthus hybridus HOM05D004009 ORTHO05D004617 1.5e-33 146.0 93 83.9
AL6G39120 Arabidopsis lyrata HOM05D004009 ORTHO05D004617 1.5e-33 146.0 93 82.8
AT5G27820 Arabidopsis thaliana HOM05D004009 ORTHO05D004617 1.5e-33 146.0 93 82.8
A06p37330 Brassica napus HOM05D004009 ORTHO05D004617 1.5e-33 146.0 93 81.7
C02p58320 Brassica napus HOM05D004009 ORTHO05D004617 1.5e-33 146.0 93 82.8
C07p41140 Brassica napus HOM05D004009 ORTHO05D004617 1.5e-33 146.0 93 81.7
BolC7t44642H Brassica oleracea HOM05D004009 ORTHO05D004617 1.5e-33 146.0 93 81.7
BraA06t26655Z Brassica rapa HOM05D004009 ORTHO05D004617 1.5e-33 146.0 93 81.7
CANSAT80G2371 Cannabis sativa HOM05D004009 ORTHO05D004617 1.5e-33 146.0 93 83.9
Actinidia35549 Actinidia chinensis HOM05D004009 ORTHO05D004617 1.9e-33 145.6 93 83.9
EL10Ac4g09902 Beta vulgaris HOM05D004009 ORTHO05D004617 1.9e-33 145.6 93 82.8
CiPaw.08G161200 Carya illinoinensis HOM05D004009 ORTHO05D004617 1.9e-33 145.6 93 82.8
A02p38770 Brassica napus HOM05D004009 ORTHO05D004617 2.5e-33 145.2 93 81.7
QL03p019968 Quercus lobata HOM05D004009 ORTHO05D004617 2.5e-33 145.2 92 81.5
BcaB07g34204 Brassica carinata HOM05D004009 ORTHO05D004617 3.3e-33 144.8 93 80.6
CSS0030878 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 3.3e-33 144.8 93 83.9
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 3.3e-33 144.8 93 82.8
Duzib106G1589 Durio zibethinus HOM05D004009 ORTHO05D004617 4.3e-33 144.4 93 86.0
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 4.3e-33 144.4 93 82.8
BolC2t11896H Brassica oleracea HOM05D004009 ORTHO05D004617 5.6e-33 144.1 93 80.6
AUR62000751 Chenopodium quinoa HOM05D004009 ORTHO05D004617 5.6e-33 144.1 93 81.7
AUR62005217 Chenopodium quinoa HOM05D004009 ORTHO05D004617 5.6e-33 144.1 93 81.7
Sc16g0008790 Simmondsia chinensis HOM05D004009 ORTHO05D004617 5.6e-33 144.1 93 83.9
COL.COLO4_00089 Corchorus olitorius HOM05D004009 ORTHO05D004617 7.3e-33 143.7 93 86.0
Os01g0256600 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 9.5e-33 143.3 93 81.7
Hund07105 Selenicereus undatus HOM05D004009 ORTHO05D004617 9.5e-33 143.3 93 82.8
BcaC03g17808 Brassica carinata HOM05D004009 ORTHO05D004617 1.2e-32 142.9 93 80.6
DCAR_029387 Daucus carota HOM05D004009 ORTHO05D004617 1.2e-32 142.9 93 82.8
Aqoxy5G00760 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 1.6e-32 142.5 93 82.8
Ciclev10029577m.g Citrus clementina HOM05D004009 ORTHO05D004617 1.6e-32 142.5 93 82.8
CsaV3_4G029790 Cucumis sativus L. HOM05D004009 ORTHO05D004617 1.6e-32 142.5 93 82.8
Dinv30825 Davidia involucrata HOM05D002144 ORTHO05D004617 1.6e-32 142.5 91 83.5
MBI14_g17350_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 1.6e-32 142.5 93 81.7
PSO478G4766 Papaver somniferum HOM05D004009 ORTHO05D004617 1.6e-32 142.5 93 82.8
THA.LOC104821727 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 1.6e-32 142.5 93 81.7
Atru.chr2.80 Acer truncatum HOM05D004009 ORTHO05D004617 2.1e-32 142.1 93 81.7
Actinidia26756 Actinidia chinensis HOM05D004009 ORTHO05D004617 2.1e-32 142.1 93 81.7
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 2.1e-32 142.1 93 78.5
Oeu053408.1 Olea europaea HOM05D004009 ORTHO05D004617 2.8e-32 141.7 97 83.5
Cpa.g.sc327.8 Carica papaya HOM05D004009 ORTHO05D004617 3.6e-32 141.4 93 84.9
Cc02_g34270 Coffea canephora HOM05D004009 ORTHO05D004617 3.6e-32 141.4 97 83.5
Eucgr.F00288 Eucalyptus grandis HOM05D004009 ORTHO05D004617 3.6e-32 141.4 94 84.0
TWI56G0677 Tripterygium wilfordii HOM05D004009 ORTHO05D004617 3.6e-32 141.4 93 82.8
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 4.7e-32 141.0 90 80.0
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 4.7e-32 141.0 90 80.0
MBI18_g06039_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 6.2e-32 140.6 87 86.2
Manes.08G116611 Manihot esculenta HOM05D004009 ORTHO05D004617 6.2e-32 140.6 93 81.7
Dinv40349 Davidia involucrata HOM05D004009 ORTHO05D004617 8.1e-32 140.2 93 81.7
PSO782G5716 Papaver somniferum HOM05D004009 ORTHO05D004617 8.1e-32 140.2 93 81.7
FAN09G2085 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.4e-31 139.4 92 79.3
Ciclev10033184m.g Citrus clementina HOM05D004009 ORTHO05D004617 1.8e-31 139.0 93 79.6
Nn3g21508 Nelumbo nucifera HOM05D004009 ORTHO05D004617 1.8e-31 139.0 88 85.2
AUR62039989 Chenopodium quinoa HOM05D004009 ORTHO05D004617 2.3e-31 138.7 93 79.6
THA.LOC104818726 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 2.3e-31 138.7 93 79.6
MSTRG.6369 Avicennia marina HOM05D004009 ORTHO05D004617 3.1e-31 138.3 97 79.4
CDE01G0501 Ceratophyllum demersum HOM05D004009 ORTHO05D004617 5.2e-31 137.5 93 80.6
GSVIVG01031184001 Vitis vinifera HOM05D004009 ORTHO05D004617 5.2e-31 137.5 93 78.5
SGA_v2.0_scaffold105G30284 Striga asiatica HOM05D004009 ORTHO05D004617 6.8e-31 137.1 97 78.4
SGA_v2.0_scaffold3G01716 Striga asiatica HOM05D004009 ORTHO05D004617 6.8e-31 137.1 97 78.4
FAN03G2789 Fragaria x ananassa HOM05D004009 ORTHO05D004617 8.9e-31 136.7 87 85.1
HPP92_021911 Vanilla planifolia HOM05D004009 ORTHO05D004617 8.9e-31 136.7 93 79.6
Potri.007G100900 Populus trichocarpa HOM05D004009 ORTHO05D004617 1.2e-30 136.3 93 77.4
Migut.J01649 Erythranthe guttata HOM05D004009 ORTHO05D004617 2.0e-30 135.6 97 79.4
Zm00001eb053740 Zea mays HOM05D004009 ORTHO05D004617 2.6e-30 135.2 93 79.6
SGA_v2.0_scaffold6G03272 Striga asiatica HOM05D004009 ORTHO05D004617 3.4e-30 134.8 97 76.3
Rhsim07G0190600 Rhododendron simsii HOM05D004009 ORTHO05D004617 4.4e-30 134.4 87 82.8
ECA236G1235 Erigeron canadensis HOM05D004009 ORTHO05D004617 7.5e-30 133.7 97 77.3
Solyc07g045390.3 Solanum lycopersicum HOM05D004009 ORTHO05D004617 7.5e-30 133.7 97 76.3
Sopen07g023940 Solanum pennellii HOM05D004009 ORTHO05D004617 7.5e-30 133.7 97 76.3
unitig_21.g20690 Utricularia gibba HOM05D004009 ORTHO05D004617 7.5e-30 133.7 97 79.4
PGSC0003DMG400017402 Solanum tuberosum HOM05D004009 ORTHO05D004617 9.8e-30 133.3 97 75.3
unitig_744.g24181 Utricularia gibba HOM05D004009 ORTHO05D004617 1.3e-29 132.9 97 78.4
ATR0796G339 Amborella trichopoda HOM05D004009 ORTHO05D004617 1.7e-29 132.5 93 74.2
vmacro19695 Vaccinium macrocarpon HOM05D004009 ORTHO05D004617 3.7e-29 131.3 91 74.7
CAN.G177.17 Capsicum annuum HOM05D004009 ORTHO05D004617 4.9e-29 131.0 97 73.2
LjContig00081g0003615 Lotus japonicus HOM05D003043 ORTHO05D004617 4.9e-29 131.0 77 89.6
Peaxi162Scf00154g00518 Petunia axillaris HOM05D004009 ORTHO05D004617 6.4e-29 130.6 97 73.2
HanXRQChr11g0320811 Helianthus annuus HOM05D004009 ORTHO05D004617 8.3e-29 130.2 97 75.3
Nitab4.5_0004010g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 8.3e-29 130.2 97 72.2
Os03g0694800 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 1.1e-28 129.8 93 75.3
Rhsim05G0137900 Rhododendron simsii HOM05D004009 ORTHO05D004617 1.1e-28 129.8 93 75.3
Nitab4.5_0000726g0020 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.9e-28 129.0 96 72.9
Nitab4.5_0004323g0030 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.9e-28 129.0 97 73.2
Nitab4.5_0010629g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 2.4e-28 128.6 97 72.2
Peaxi162Scf00131g00006 Petunia axillaris HOM05D004009 ORTHO05D004617 2.4e-28 128.6 97 73.2
Eucgr.K01592 Eucalyptus grandis HOM05D004009 ORTHO05D004617 4.1e-28 127.9 87 80.5
HanXRQChr11g0339871 Helianthus annuus HOM05D004009 ORTHO05D004617 4.1e-28 127.9 97 74.2
TAR365G0762 Trochodendron aralioides HOM05D004009 ORTHO05D004617 7.1e-28 127.1 76 89.5
SalBow6G1513 Salvia bowleyana HOM05D004009 ORTHO05D004617 1.2e-27 126.3 97 69.1
PGR119G0770 Punica granatum HOM05D004009 ORTHO05D004617 3.5e-27 124.8 84 82.1
Eucgr.F00513 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.0e-26 123.2 92 76.1
FAN23G0674 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.3e-26 122.9 74 87.8
HanXRQChr03g0090821 Helianthus annuus HOM05D004009 ORTHO05D004617 2.3e-26 122.1 98 71.4
EL10Ac5g12451 Beta vulgaris HOM05D004009 ORTHO05D004617 6.6e-26 120.6 74 85.1
SEGI_15227 Sequoiadendron giganteum HOM05D004009 ORTHO05D004617 1.1e-25 119.8 93 66.7
Eucgr.F00518 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.5e-25 119.4 93 74.2
BcaC04g23644 Brassica carinata HOM05D004009 ORTHO05D004617 1.9e-25 119.0 93 69.9
CARHR186300 Cardamine hirsuta HOM05D004009 ORTHO05D004617 3.3e-25 118.2 75 81.3
SHI18095 Sapria himalayana HOM05D004009 ORTHO05D004617 3.3e-25 118.2 93 66.7
Lsat_1_v5_gn_5_65061 Lactuca sativa HOM05D004009 ORTHO05D004617 4.3e-25 117.9 90 76.7
FAN02G3567 Fragaria x ananassa HOM05D004009 ORTHO05D004617 5.6e-25 117.5 78 79.5
Lsat_1_v5_gn_7_71720 Lactuca sativa HOM05D004009 ORTHO05D004617 5.6e-25 117.5 86 77.9
Eucgr.F00510 Eucalyptus grandis HOM05D004009 ORTHO05D004617 9.5e-25 116.7 93 73.1
Eucgr.F00523 Eucalyptus grandis HOM05D004009 ORTHO05D004617 6.8e-23 110.5 93 67.7
Eucgr.F00521 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.2e-22 109.8 93 68.8
Mapoly0031s0031 Marchantia polymorpha HOM05D004009 ORTHO05D004617 9.9e-22 106.7 93 61.3
Eucgr.F00280 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.7e-21 105.9 93 67.7
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 6.4e-21 104.0 95 63.2
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 6.4e-21 104.0 95 63.2
Eucgr.F00526 Eucalyptus grandis HOM05D004009 ORTHO05D004617 4.1e-20 101.3 70 78.6
AagrBONN_evm.TU.Sc2ySwM_368.1872 Anthoceros agrestis HOM05D004009 ORTHO05D004617 1.6e-19 99.4 97 57.7
Pp3c1_22820 Physcomitrium patens HOM05D004009 ORTHO05D004617 2.3e-18 95.5 93 51.6
CAN.G504.96 Capsicum annuum HOM05D004009 ORTHO05D004617 4.3e-17 91.3 93 60.2
COL.COLO4_10533 Corchorus olitorius HOM05D004009 ORTHO05D004617 7.3e-17 90.5 59 84.7
CSS0025576 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 8.9e-15 83.6 54 79.6
MBI14_g39769_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 1.2e-14 83.2 54 77.8
SMO352G0027 Selaginella moellendorffii HOM05D004009 ORTHO05D004617 7.3e-09 63.9 94 41.5
Mapoly0056s0039 Marchantia polymorpha HOM05D001606 ORTHO05D002266 4.0e-07 58.2 90 35.6
Potri.005G068300 Populus trichocarpa HOM05D004009 ORTHO05D004617 2.0e-06 55.8 36 77.8
HanXRQChr08g0232101 Helianthus annuus HOM05D004009 ORTHO05D004617 3.4e-06 55.1 34 79.4
CBR_g12617 Chara braunii HOM05D001606 ORTHO05D002266 4.4e-06 54.7 90 33.3
GSVIVG01026787001 Vitis vinifera HOM05D001606 ORTHO05D002266 5.8e-06 54.3 87 32.2
MCO01G553 Micromonas commoda HOM05D004009 ORTHO05D004617 7.6e-06 53.9 89 32.6
Carub.0003s2016 Capsella rubella HOM05D001606 ORTHO05D002266 9.9e-06 53.5 87 34.5
ClCG11G008640 Citrullus lanatus HOM05D001606 ORTHO05D002266 9.9e-06 53.5 87 34.5


User provided reference genes

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