Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 3.1e-142 508.4 260 100.0
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 3.8e-95 352.1 263 76.4
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 4.6e-61 238.8 271 57.6
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 5.1e-60 235.3 261 58.6
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 2.6e-59 233.0 274 56.9
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 2.6e-59 233.0 270 55.6
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 4.4e-59 232.3 271 57.6
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 1.3e-58 230.7 261 58.2
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.7e-58 230.3 261 57.5
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 1.8e-57 226.9 260 55.4
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 1.2e-56 224.2 262 55.3
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.1e-54 217.6 280 52.5
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 3.2e-54 216.1 278 52.5
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 9.4e-54 214.5 263 53.6
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 1.6e-53 213.8 278 51.4
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 1.4e-52 210.7 260 51.9
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 2.3e-52 209.9 280 51.4
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 3.0e-52 209.5 259 52.1
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 1.5e-51 207.2 263 53.2
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 2.6e-51 206.5 265 55.1
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 5.7e-51 205.3 246 57.3
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 2.8e-50 203.0 257 54.9
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 3.7e-50 202.6 263 52.1
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 1.1e-49 201.1 277 48.7
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 1.4e-49 200.7 263 51.0
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.4e-49 200.7 264 52.7
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.8e-49 200.3 263 51.3
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 3.1e-49 199.5 262 52.7
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 9.1e-49 198.0 270 50.4
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 1.6e-48 197.2 265 53.6
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 1.6e-48 197.2 263 51.3
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 2.6e-48 196.4 261 50.2
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 3.5e-48 196.1 262 51.1
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 1.0e-47 194.5 262 49.2
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 2.2e-47 193.4 271 51.7
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 3.8e-47 192.6 243 53.1
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 8.5e-47 191.4 283 48.8
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 8.0e-45 184.9 242 51.2
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 1.8e-44 183.7 267 49.1
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 6.7e-44 181.8 267 47.2
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 6.7e-44 181.8 272 50.4
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 2.6e-43 179.9 264 47.7
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 3.3e-43 179.5 249 47.4
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 3.3e-43 179.5 261 51.0
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 9.7e-43 177.9 263 45.6
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 1.7e-42 177.2 272 49.6
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 2.2e-42 176.8 260 45.4
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 2.8e-42 176.4 259 46.7
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 4.8e-42 175.6 263 46.0
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 4.8e-42 175.6 260 49.2
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.2e-40 171.0 183 59.0
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 4.5e-40 169.1 256 48.0
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 3.8e-39 166.0 266 44.7
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 2.5e-38 163.3 278 43.2
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 4.2e-38 162.5 262 47.3
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 1.2e-37 161.0 265 43.0
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.6e-37 160.6 258 46.9
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 2.1e-37 160.2 252 45.2
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 2.7e-37 159.8 256 44.1
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 3.6e-37 159.5 258 48.4
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.0e-36 157.9 263 44.5
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 6.8e-36 155.2 266 41.7
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.4e-35 152.9 258 44.6
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 9.8e-35 151.4 258 44.6
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 4.8e-34 149.1 265 41.1
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.8e-34 149.1 256 44.5
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 6.3e-34 148.7 257 44.4
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 1.4e-33 147.5 193 56.0
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 7.0e-33 145.2 272 41.5
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 7.0e-33 145.2 262 42.4
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 1.2e-32 144.4 260 40.0
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.2e-32 144.4 262 42.4
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.6e-32 144.1 254 42.1
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 1.6e-32 144.1 259 42.5
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.6e-32 144.1 262 43.9
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 2.0e-32 143.7 264 42.8
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 2.7e-32 143.3 264 39.4
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.5e-32 142.9 262 42.4
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 4.5e-32 142.5 258 42.6
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.0e-31 141.4 292 38.7
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 1.0e-31 141.4 264 41.7
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 1.3e-31 141.0 272 42.6
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 2.9e-31 139.8 258 41.9
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 6.5e-31 138.7 258 42.2
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 1.1e-30 137.9 264 40.5
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 1.9e-30 137.1 271 40.6
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 3.3e-30 136.3 266 41.7
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 1.6e-29 134.0 266 42.5
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 3.6e-29 132.9 266 41.4
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 3.6e-29 132.9 270 39.6
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 1.8e-28 130.6 260 39.6
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 3.0e-28 129.8 264 39.0
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 5.7e-27 125.6 268 38.8
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 2.2e-26 123.6 267 36.0
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 2.8e-26 123.2 263 38.4
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 3.7e-26 122.9 263 38.4
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 8.3e-26 121.7 270 40.4
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 8.3e-26 121.7 270 40.4
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 1.4e-25 120.9 270 38.5
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 1.4e-25 120.9 268 37.7
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.4e-25 120.9 197 42.6
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 2.4e-25 120.2 262 37.4
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 5.4e-25 119.0 267 39.7
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 7.0e-25 118.6 256 39.1
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 9.2e-25 118.2 270 40.4
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 9.2e-25 118.2 267 39.3
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 9.2e-25 118.2 267 39.3
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 1.2e-24 117.9 265 39.2
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.6e-24 117.5 273 37.4
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 2.0e-24 117.1 263 38.4
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 2.0e-24 117.1 271 37.3
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 2.0e-24 117.1 263 38.4
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 2.0e-24 117.1 263 38.4
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 2.0e-24 117.1 260 39.2
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 2.0e-24 117.1 270 36.7
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 2.7e-24 116.7 265 38.1
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 2.7e-24 116.7 265 38.1
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 4.5e-24 115.9 266 39.5
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 5.9e-24 115.5 202 44.6
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.3e-23 114.4 269 36.8
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 3.8e-23 112.8 269 35.7
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 5.0e-23 112.5 187 43.9
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 6.6e-23 112.1 270 38.9
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 1.9e-22 110.5 270 35.2
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 4.3e-22 109.4 275 36.7
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 5.6e-22 109.0 266 38.0
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 7.3e-22 108.6 204 42.2
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.2e-21 107.8 258 38.0
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.2e-21 107.8 267 36.7
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 1.2e-21 107.8 248 37.1
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 3.6e-21 106.3 266 34.2
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.7e-21 105.9 260 34.2
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 8.0e-21 105.1 191 40.8
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 1.0e-20 104.8 279 38.0
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 1.4e-20 104.4 149 46.3
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 1.4e-20 104.4 260 34.6
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.8e-20 104.0 272 38.2
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 2.3e-20 103.6 266 36.1
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.3e-20 103.6 261 34.9
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 4.0e-20 102.8 189 41.8
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 8.9e-20 101.7 187 41.7
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 2.6e-19 100.1 261 35.6
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 2.6e-19 100.1 259 34.7
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 2.9e-18 96.7 259 36.3
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.1e-17 94.7 269 33.5
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 4.1e-17 92.8 164 42.7
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 4.1e-17 92.8 160 41.9
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 4.6e-16 89.4 214 37.9
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 1.3e-15 87.8 267 34.5
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 6.6e-15 85.5 150 44.0
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 2.8e-13 80.1 193 32.6
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 8.9e-12 75.1 185 34.1
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 9.8e-11 71.6 81 58.0
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 1.3e-10 71.2 82 47.6
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.3e-10 71.2 116 45.7
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.9e-10 70.1 160 35.6
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 6.4e-10 68.9 197 35.0
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 3.2e-09 66.6 177 36.2
unitig_744.g24165 Utricularia gibba HOM05D004369 ORTHO05D004907 1.2e-08 64.7 132 37.9
Nn1g03499 Nelumbo nucifera HOM05D004369 ORTHO05D004907 1.0e-07 61.6 85 47.1
Os07g0686600 Oryza sativa ssp. japonica HOM05D015271 ORTHO05D020944 5.0e-07 59.3 113 36.3
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 3.3e-06 56.6 154 31.2
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 9.5e-06 55.1 84 40.5


User provided reference genes

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