Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1182600 Malus domestica HOM05D000186 ORTHO05D030079 1.6e-61 239.2 118 100.0
MD04G1181600 Malus domestica HOM05D000186 ORTHO05D006806 5.6e-46 187.6 100 92.0
MD12G1196400 Malus domestica HOM05D000186 ORTHO05D006806 1.6e-45 186.0 100 91.0
Prupe.6G301000 Prunus persica HOM05D000186 ORTHO05D006806 8.9e-44 180.3 102 85.3
FAN05G4446 Fragaria x ananassa HOM05D000186 ORTHO05D006806 2.3e-36 155.6 99 68.7
RcHm_v2.0_Chr3g0459281 Rosa chinensis HOM05D000186 ORTHO05D006806 2.3e-36 155.6 109 67.9
FvH4_6g09030 Fragaria vesca HOM05D000186 ORTHO05D006806 1.2e-35 153.3 96 69.8
FAN09G1435 Fragaria x ananassa HOM05D000186 ORTHO05D006806 1.2e-35 153.3 96 69.8
FAN14G3857 Fragaria x ananassa HOM05D000186 ORTHO05D006806 1.2e-35 153.3 96 69.8
FAN02G1194 Fragaria x ananassa HOM05D000186 ORTHO05D006806 2.0e-35 152.5 93 72.0
Ciclev10011265m.g Citrus clementina HOM05D000186 ORTHO05D006806 3.8e-34 148.3 91 78.0
GSVIVG01029827001 Vitis vinifera HOM05D000186 ORTHO05D006806 3.8e-34 148.3 95 69.5
CiPaw.10G167500 Carya illinoinensis HOM05D000186 ORTHO05D006806 1.9e-33 146.0 92 75.0
Lalb_Chr19g0123851 Lupinus albus HOM05D000186 ORTHO05D006806 2.4e-33 145.6 92 72.8
Lalb_Chr01g0024051 Lupinus albus HOM05D000186 ORTHO05D006806 4.1e-33 144.8 82 78.0
Thecc.04G063300 Theobroma cacao HOM05D000186 ORTHO05D006806 9.2e-33 143.7 87 77.0
CSS0042957 Camellia sinensis var. sinensis HOM05D000186 ORTHO05D006806 1.2e-32 143.3 95 67.4
Gohir.A09G213674 Gossypium hirsutum HOM05D000186 ORTHO05D006806 1.2e-32 143.3 87 71.3
Lj1g0025586 Lotus japonicus HOM05D000186 ORTHO05D006806 1.2e-32 143.3 92 70.7
Actinidia29001 Actinidia chinensis HOM05D000186 ORTHO05D006806 2.1e-32 142.5 111 59.5
QL07p030191 Quercus lobata HOM05D000186 ORTHO05D006806 2.1e-32 142.5 87 77.0
QL07p030837 Quercus lobata HOM05D000186 ORTHO05D006806 2.1e-32 142.5 87 77.0
TPR.G3223 Trifolium pratense HOM05D000186 ORTHO05D006806 2.1e-32 142.5 103 65.0
Haze_21234 Corylus avellana HOM05D000186 ORTHO05D006806 2.7e-32 142.1 87 75.9
CANSAT21G1223 Cannabis sativa HOM05D000186 ORTHO05D006806 3.5e-32 141.7 84 73.8
Gohir.D09G215600 Gossypium hirsutum HOM05D000186 ORTHO05D006806 3.5e-32 141.7 87 71.3
Gorai.006G236100 Gossypium raimondii HOM05D000186 ORTHO05D006806 3.5e-32 141.7 87 71.3
arahy.Tifrunner.gnm1.ann1.H95TME Arachis hypogaea HOM05D000186 ORTHO05D006806 4.6e-32 141.4 82 78.0
arahy.Tifrunner.gnm1.ann1.L7YTM2 Arachis hypogaea HOM05D000186 ORTHO05D006806 4.6e-32 141.4 82 78.0
COL.COLO4_08813 Corchorus olitorius HOM05D000186 ORTHO05D006806 4.6e-32 141.4 87 74.7
Glyma.09G269900 Glycine max HOM05D000186 ORTHO05D006806 7.8e-32 140.6 98 65.3
Cfa016975 Carpinus fangiana HOM05D000186 ORTHO05D006806 1.3e-31 139.8 107 63.6
Dinv25388 Davidia involucrata HOM05D000186 ORTHO05D006806 1.7e-31 139.4 95 66.3
Glyma.18G220200 Glycine max HOM05D000186 ORTHO05D006806 1.7e-31 139.4 108 60.2
Duzib151G0189 Durio zibethinus HOM05D000186 ORTHO05D006806 2.3e-31 139.0 87 73.6
Psat3g116680 Pisum sativum HOM05D000186 ORTHO05D006806 2.3e-31 139.0 102 65.7
PGR004G1439 Punica granatum HOM05D000186 ORTHO05D006806 2.3e-31 139.0 95 66.3
Atru.chr8.16 Acer truncatum HOM05D000186 ORTHO05D006806 3.0e-31 138.7 82 76.8
Eucgr.A00881 Eucalyptus grandis HOM05D000186 ORTHO05D006806 5.1e-31 137.9 80 80.0
Gorai.005G129100 Gossypium raimondii HOM05D000186 ORTHO05D006806 8.6e-31 137.1 87 73.6
Sed0018545 Sechium edule HOM05D000186 ORTHO05D006806 1.9e-30 136.0 84 73.8
Manes.09G119300 Manihot esculenta HOM05D000186 ORTHO05D006806 2.5e-30 135.6 95 65.3
Gohir.D02G112200 Gossypium hirsutum HOM05D000186 ORTHO05D006806 3.3e-30 135.2 87 72.4
Medtr7g074680 Medicago truncatula HOM05D000186 ORTHO05D006806 4.3e-30 134.8 92 67.4
Potri.016G143966 Populus trichocarpa HOM05D000186 ORTHO05D006806 7.3e-30 134.0 98 62.2
PSO339G6692 Papaver somniferum HOM05D000186 ORTHO05D006806 1.2e-29 133.3 103 60.2
Hund03682 Selenicereus undatus HOM05D000186 ORTHO05D006806 1.6e-29 132.9 102 61.8
TAR633G2554 Trochodendron aralioides HOM05D000186 ORTHO05D006806 2.1e-29 132.5 96 64.6
CsaV3_4G013490 Cucumis sativus L. HOM05D000186 ORTHO05D006806 2.8e-29 132.1 82 72.0
Dinv01964 Davidia involucrata HOM05D000186 ORTHO05D006806 2.8e-29 132.1 103 60.2
Gohir.A02G089300 Gossypium hirsutum HOM05D000186 ORTHO05D006806 2.8e-29 132.1 87 72.4
Nn5g26724 Nelumbo nucifera HOM05D000186 ORTHO05D006806 2.8e-29 132.1 96 64.6
Sabra04G0159800 Salix brachista HOM05D000186 ORTHO05D006806 2.8e-29 132.1 93 64.5
Cpa.g.sc63.51 Carica papaya HOM05D000186 ORTHO05D006806 3.6e-29 131.7 91 63.7
vmacro20097 Vaccinium macrocarpon HOM05D000186 ORTHO05D006806 4.7e-29 131.3 98 61.2
Phvul.008G076900 Phaseolus vulgaris HOM05D000186 ORTHO05D006806 6.2e-29 131.0 98 60.2
ClCG04G005130 Citrullus lanatus HOM05D000186 ORTHO05D006806 8.1e-29 130.6 82 72.0
PSO384G5073 Papaver somniferum HOM05D000186 ORTHO05D006806 8.1e-29 130.6 103 60.2
Rhsim05G0185300 Rhododendron simsii HOM05D000186 ORTHO05D006806 1.1e-28 130.2 109 57.8
MELO3C025283.2 Cucumis melo HOM05D000186 ORTHO05D006806 1.4e-28 129.8 82 70.7
Manes.08G165700 Manihot esculenta HOM05D000186 ORTHO05D006806 1.8e-28 129.4 95 63.2
VMungo1383G2067 Vigna mungo HOM05D000186 ORTHO05D006806 1.8e-28 129.4 93 62.4
Aa31LG5G23300 Aethionema arabicum HOM05D000186 ORTHO05D006806 2.4e-28 129.0 104 54.8
Oeu063838.1 Olea europaea HOM05D000186 ORTHO05D006806 2.4e-28 129.0 85 69.4
Lj2A52T89 Lonicera japonica HOM05D000186 ORTHO05D006806 4.0e-28 128.3 86 66.3
Sabra06G0089200 Salix brachista HOM05D000186 ORTHO05D006806 4.0e-28 128.3 105 55.2
Carub.0004s2063 Capsella rubella HOM05D000186 ORTHO05D006806 5.2e-28 127.9 104 54.8
EL10Ac2g02411 Beta vulgaris HOM05D000186 ORTHO05D006806 6.9e-28 127.5 91 68.1
AL4G35930 Arabidopsis lyrata HOM05D000186 ORTHO05D006806 1.2e-27 126.7 104 54.8
THA.LOC104806306 Tarenaya hassleriana HOM05D000186 ORTHO05D006806 1.2e-27 126.7 106 53.8
Thhalv10016387m.g Eutrema salsugineum HOM05D000186 ORTHO05D006806 1.5e-27 126.3 104 54.8
A04p29480 Brassica napus HOM05D000186 ORTHO05D006806 2.0e-27 125.9 104 55.8
BraA04t18415Z Brassica rapa HOM05D000186 ORTHO05D006806 2.0e-27 125.9 104 55.8
BcaC02g07455 Brassica carinata HOM05D000186 ORTHO05D006806 2.6e-27 125.6 104 55.8
C04p66800 Brassica napus HOM05D000186 ORTHO05D006806 2.6e-27 125.6 104 55.8
BolC4t28181H Brassica oleracea HOM05D000186 ORTHO05D006806 2.6e-27 125.6 104 55.8
Migut.J00004 Erythranthe guttata HOM05D000186 ORTHO05D006806 2.6e-27 125.6 85 68.2
AT2G38650 Arabidopsis thaliana HOM05D000186 ORTHO05D006806 3.4e-27 125.2 104 54.8
AUR62020285 Chenopodium quinoa HOM05D000186 ORTHO05D006806 3.4e-27 125.2 92 64.1
CARHR133320 Cardamine hirsuta HOM05D000186 ORTHO05D006806 4.4e-27 124.8 105 55.2
PGR031G2837 Punica granatum HOM05D000186 ORTHO05D006806 4.4e-27 124.8 87 66.7
Sp4g20990 Schrenkiella parvula HOM05D000186 ORTHO05D006806 4.4e-27 124.8 104 54.8
Sed0003702 Sechium edule HOM05D000186 ORTHO05D006806 4.4e-27 124.8 82 65.9
HanXRQChr15g0464651 Helianthus annuus HOM05D000186 ORTHO05D006806 7.6e-27 124.0 82 67.1
CDE04G3282 Ceratophyllum demersum HOM05D000186 ORTHO05D006806 9.9e-27 123.6 105 52.4
MSTRG.5476 Avicennia marina HOM05D000186 ORTHO05D006806 1.3e-26 123.2 102 58.8
Potri.006G114300 Populus trichocarpa HOM05D000186 ORTHO05D006806 1.3e-26 123.2 93 60.2
ECA247G0468 Erigeron canadensis HOM05D002393 ORTHO05D002845 1.7e-26 122.9 82 64.6
Ah.10g024810 Amaranthus hybridus HOM05D000186 ORTHO05D006806 2.2e-26 122.5 82 69.5
AUR62037720 Chenopodium quinoa HOM05D000186 ORTHO05D006806 2.9e-26 122.1 91 63.7
DCAR_015317 Daucus carota HOM05D000186 ORTHO05D006806 3.8e-26 121.7 83 66.3
HanXRQChr10g0286521 Helianthus annuus HOM05D000186 ORTHO05D006806 4.9e-26 121.3 88 56.8
Lsat_1_v5_gn_9_40241 Lactuca sativa HOM05D000186 ORTHO05D006806 6.4e-26 120.9 95 58.9
Oeu013183.3 Olea europaea HOM05D000186 ORTHO05D006806 8.4e-26 120.6 86 61.6
Cc06_g00010 Coffea canephora HOM05D000186 ORTHO05D006806 1.9e-25 119.4 102 56.9
HPP92_015448 Vanilla planifolia HOM05D000186 ORTHO05D006806 1.9e-25 119.4 110 54.5
SGA_v2.0_scaffold85G26583 Striga asiatica HOM05D000186 ORTHO05D006806 2.4e-25 119.0 81 67.9
A05p07450 Brassica napus HOM05D000186 ORTHO05D006806 4.2e-25 118.2 83 59.0
C04p08910 Brassica napus HOM05D000186 ORTHO05D006806 4.2e-25 118.2 83 59.0
BolC4t22481H Brassica oleracea HOM05D000186 ORTHO05D006806 4.2e-25 118.2 83 59.0
BraA05t19710Z Brassica rapa HOM05D000186 ORTHO05D006806 4.2e-25 118.2 83 59.0
Aqoxy2G00610 Aquilegia oxysepala HOM05D000186 ORTHO05D006806 5.4e-25 117.9 83 62.7
TWI74G0607 Tripterygium wilfordii HOM05D000186 ORTHO05D006806 7.1e-25 117.5 95 60.0
unitig_26.g8968 Utricularia gibba HOM05D000186 ORTHO05D006806 7.1e-25 117.5 82 63.4
ATR1127G145 Amborella trichopoda HOM05D000186 ORTHO05D006806 9.3e-25 117.1 94 59.6
CDE06G2059 Ceratophyllum demersum HOM05D000186 ORTHO05D006806 9.3e-25 117.1 103 50.5
Peaxi162Scf00374g00724 Petunia axillaris HOM05D000186 ORTHO05D006806 1.2e-24 116.7 83 61.4
A03p21490 Brassica napus HOM05D000186 ORTHO05D006806 2.1e-24 115.9 83 59.0
BraA03t11384Z Brassica rapa HOM05D000186 ORTHO05D006806 2.1e-24 115.9 83 59.0
Solyc10g074650.2 Solanum lycopersicum HOM05D000186 ORTHO05D006806 2.7e-24 115.5 83 61.4
Sopen10g027140 Solanum pennellii HOM05D000186 ORTHO05D006806 2.7e-24 115.5 83 61.4
Ah.12g061270 Amaranthus hybridus HOM05D000186 ORTHO05D006806 3.5e-24 115.2 82 63.4
SGA_v2.0_scaffold373G50206 Striga asiatica HOM05D000186 ORTHO05D006806 4.6e-24 114.8 85 63.5
BcaB01g03668 Brassica carinata HOM05D000186 ORTHO05D006806 6.0e-24 114.4 83 57.8
TWI53G1137 Tripterygium wilfordii HOM05D000186 ORTHO05D006806 6.0e-24 114.4 100 59.0
Zm00001eb087260 Zea mays HOM05D000186 ORTHO05D030079 6.0e-24 114.4 86 60.5
CAN.G751.5 Capsicum annuum HOM05D000186 ORTHO05D006806 7.8e-24 114.0 83 61.4
Zm00001eb405650 Zea mays HOM05D000186 ORTHO05D006806 7.8e-24 114.0 86 59.3
Nitab4.5_0001700g0050 Nicotiana tabacum HOM05D000186 ORTHO05D006806 1.0e-23 113.6 78 65.4
Nitab4.5_0012032g0010 Nicotiana tabacum HOM05D000186 ORTHO05D006806 1.3e-23 113.2 78 65.4
Os11g0124900 Oryza sativa ssp. japonica HOM05D000186 ORTHO05D006806 1.3e-23 113.2 85 58.8
BcaC01g05520 Brassica carinata HOM05D000186 ORTHO05D006806 3.0e-23 112.1 82 57.3
C03p25440 Brassica napus HOM05D000186 ORTHO05D006806 3.0e-23 112.1 82 57.3
BolC3t14935H Brassica oleracea HOM05D000186 ORTHO05D006806 3.0e-23 112.1 82 57.3
Os03g0330000 Oryza sativa ssp. japonica HOM05D000186 ORTHO05D006806 3.0e-23 112.1 80 65.0
Zm00001eb015760 Zea mays HOM05D000186 ORTHO05D006806 3.9e-23 111.7 80 65.0
Zm00001eb345840 Zea mays HOM05D000186 ORTHO05D030079 3.9e-23 111.7 86 58.1
Zm00001eb395280 Zea mays HOM05D000186 ORTHO05D006806 3.9e-23 111.7 80 65.0
HPP92_026671 Vanilla planifolia HOM05D000186 ORTHO05D030720 5.1e-23 111.3 85 60.0
Zm00001eb111640 Zea mays HOM05D000186 ORTHO05D006806 5.1e-23 111.3 80 61.2
Zm00001eb330810 Zea mays HOM05D000186 ORTHO05D006806 5.1e-23 111.3 82 62.2
HPP92_018076 Vanilla planifolia HOM05D000186 ORTHO05D006806 1.5e-22 109.8 85 58.8
CDE06G0250 Ceratophyllum demersum HOM05D000186 ORTHO05D006806 2.5e-22 109.0 81 60.5
Os07g0681700 Oryza sativa ssp. japonica HOM05D000186 ORTHO05D006806 1.6e-21 106.3 80 61.2
HPP92_006684 Vanilla planifolia HOM05D000186 ORTHO05D006806 3.6e-21 105.1 76 61.8
SEGI_11805 Sequoiadendron giganteum HOM05D000186 ORTHO05D006806 2.6e-19 99.0 99 47.5
Actinidia11467 Actinidia chinensis HOM05D000186 ORTHO05D006806 4.2e-17 91.7 62 71.0
Sc02g0000120 Simmondsia chinensis HOM05D000186 ORTHO05D006806 6.7e-15 84.3 63 61.9
HPP92_018017 Vanilla planifolia HOM05D000186 ORTHO05D030079 1.4e-12 76.6 48 68.8
BcaC07g42654 Brassica carinata HOM05D000186 ORTHO05D001124 4.6e-08 61.6 90 32.2
AL5G43370 Arabidopsis lyrata HOM05D000186 ORTHO05D001124 1.8e-07 59.7 90 30.0
BcaC02g10205 Brassica carinata HOM05D000186 ORTHO05D001124 1.8e-07 59.7 90 31.1
A04p01270 Brassica napus HOM05D000186 ORTHO05D001124 1.8e-07 59.7 90 31.1
C04p31620 Brassica napus HOM05D000186 ORTHO05D001124 1.8e-07 59.7 90 31.1
BolC4t24709H Brassica oleracea HOM05D000186 ORTHO05D001124 1.8e-07 59.7 90 31.1
BraA04t15846Z Brassica rapa HOM05D000186 ORTHO05D001124 1.8e-07 59.7 90 31.1
CARHR171410 Cardamine hirsuta HOM05D000186 ORTHO05D001124 1.8e-07 59.7 90 30.0
Hund27336 Selenicereus undatus HOM05D000186 ORTHO05D001124 1.8e-07 59.7 94 28.7
Carub.0005s2778 Capsella rubella HOM05D000186 ORTHO05D001124 3.0e-07 58.9 90 30.0
Thhalv10005820m.g Eutrema salsugineum HOM05D000186 ORTHO05D001124 3.9e-07 58.5 90 31.1
AT3G61130 Arabidopsis thaliana HOM05D000186 ORTHO05D001124 6.7e-07 57.8 90 28.9
Sp5g02250 Schrenkiella parvula HOM05D000186 ORTHO05D001124 6.7e-07 57.8 90 28.9
Ciclev10019146m.g Citrus clementina HOM05D000186 ORTHO05D001124 1.9e-06 56.2 93 26.9
AUR62033387 Chenopodium quinoa HOM05D000186 ORTHO05D001124 2.5e-06 55.8 93 30.1
Sed0014731 Sechium edule HOM05D000186 ORTHO05D001124 2.5e-06 55.8 94 29.8
CsaV3_6G006000 Cucumis sativus L. HOM05D000186 ORTHO05D001124 4.3e-06 55.1 93 30.1
Ca_07841_v3 Cicer arietinum L. HOM05D000186 ORTHO05D001124 5.6e-06 54.7 93 28.0
Aa31LG10G15200 Aethionema arabicum HOM05D000186 ORTHO05D001124 7.4e-06 54.3 70 37.1
PSO478G3042 Papaver somniferum HOM05D000186 ORTHO05D001124 7.4e-06 54.3 94 30.9
PSO782G4901 Papaver somniferum HOM05D000186 ORTHO05D001124 7.4e-06 54.3 94 30.9
AUR62004270 Chenopodium quinoa HOM05D000186 ORTHO05D001124 9.6e-06 53.9 93 29.0


User provided reference genes

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