Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1173900 Malus domestica HOM05D003693 ORTHO05D021141 9.5e-86 320.1 156 100.0
MD12G1263800 Malus domestica HOM05D003693 ORTHO05D004698 3.6e-77 291.6 155 92.3
MD04G1246300 Malus domestica HOM05D003693 ORTHO05D004698 1.3e-74 283.1 155 90.3
Prupe.6G362600 Prunus persica HOM05D003693 ORTHO05D004698 2.5e-70 268.9 158 84.8
CANSAT21G0769 Cannabis sativa HOM05D003693 ORTHO05D004698 1.6e-64 249.6 159 79.2
GSVIVG01032211001 Vitis vinifera HOM05D003693 ORTHO05D004698 2.7e-64 248.8 155 80.0
Duzib128G1866 Durio zibethinus HOM05D003693 ORTHO05D004698 1.3e-63 246.5 162 77.2
Thecc.05G189800 Theobroma cacao HOM05D003693 ORTHO05D004698 3.9e-63 245.0 162 77.2
Ciclev10011203m.g Citrus clementina HOM05D003693 ORTHO05D004698 8.7e-63 243.8 158 77.8
Gohir.A05G393100 Gossypium hirsutum HOM05D003693 ORTHO05D004698 8.7e-63 243.8 162 77.2
Gorai.012G026300 Gossypium raimondii HOM05D003693 ORTHO05D004698 8.7e-63 243.8 162 77.2
RcHm_v2.0_Chr3g0447661 Rosa chinensis HOM05D003693 ORTHO05D004698 1.1e-62 243.4 155 80.6
Dinv43405 Davidia involucrata HOM05D003693 ORTHO05D004698 2.5e-62 242.3 156 77.6
CSS0039233 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 3.3e-62 241.9 155 78.1
Atru.chr12.1748 Acer truncatum HOM05D003693 ORTHO05D004698 4.3e-62 241.5 158 77.2
QL10p037598 Quercus lobata HOM05D003693 ORTHO05D004698 5.6e-62 241.1 161 77.6
Dinv09309 Davidia involucrata HOM05D003693 ORTHO05D004698 7.3e-62 240.7 159 77.4
vmacro13696 Vaccinium macrocarpon HOM05D003693 ORTHO05D004698 2.1e-61 239.2 155 76.1
Hma1.2p1_0685F.1_g203180 Hydrangea macrophylla HOM05D003693 ORTHO05D004698 3.6e-61 238.4 156 76.9
TAR563G0002 Trochodendron aralioides HOM05D003693 ORTHO05D004698 3.6e-61 238.4 159 74.8
CiPaw.16G119500 Carya illinoinensis HOM05D003693 ORTHO05D004698 4.8e-61 238.0 167 73.7
Lsat_1_v5_gn_1_104980 Lactuca sativa HOM05D003693 ORTHO05D004698 8.1e-61 237.3 155 76.8
TWI18G0649 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 1.1e-60 236.9 158 78.5
ECA248G0053 Erigeron canadensis HOM05D003693 ORTHO05D004698 1.8e-60 236.1 155 74.8
Manes.12G004200 Manihot esculenta HOM05D003693 ORTHO05D004698 1.8e-60 236.1 169 74.0
Lalb_Chr03g0038731 Lupinus albus HOM05D003693 ORTHO05D004698 2.4e-60 235.7 175 70.3
AUR62009420 Chenopodium quinoa HOM05D003693 ORTHO05D004698 3.1e-60 235.3 155 76.1
FAN05G2538 Fragaria x ananassa HOM05D003693 ORTHO05D004698 3.1e-60 235.3 155 77.4
Nitab4.5_0001244g0140 Nicotiana tabacum HOM05D003693 ORTHO05D004698 3.1e-60 235.3 155 76.8
Nitab4.5_0005367g0010 Nicotiana tabacum HOM05D003693 ORTHO05D004698 3.1e-60 235.3 155 77.4
FAN02G0024 Fragaria x ananassa HOM05D003693 ORTHO05D004698 5.3e-60 234.6 155 77.4
AUR62023098 Chenopodium quinoa HOM05D003693 ORTHO05D004698 6.9e-60 234.2 155 76.1
Cc02_g28770 Coffea canephora HOM05D003693 ORTHO05D004698 9.0e-60 233.8 160 73.1
FvH4_6g00360 Fragaria vesca HOM05D003693 ORTHO05D004698 1.2e-59 233.4 155 76.8
FAN09G1864 Fragaria x ananassa HOM05D003693 ORTHO05D004698 1.2e-59 233.4 155 76.8
Rhsim07G0058800 Rhododendron simsii HOM05D003693 ORTHO05D004698 1.2e-59 233.4 159 73.6
Nn2g12199 Nelumbo nucifera HOM05D003693 ORTHO05D004698 1.5e-59 233.0 159 74.2
TWI36G1545 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 1.5e-59 233.0 156 77.6
SHI13710 Sapria himalayana HOM05D003693 ORTHO05D004698 2.0e-59 232.6 164 72.6
Sopen01g034800 Solanum pennellii HOM05D003693 ORTHO05D004698 2.6e-59 232.3 156 75.0
PGSC0003DMG400006778 Solanum tuberosum HOM05D003693 ORTHO05D004698 2.6e-59 232.3 156 75.0
CAN.G1619.1 Capsicum annuum HOM05D003693 ORTHO05D004698 3.4e-59 231.9 155 75.5
Cfa020929 Carpinus fangiana HOM05D003693 ORTHO05D004698 4.5e-59 231.5 156 75.0
arahy.Tifrunner.gnm1.ann1.RCZ69X Arachis hypogaea HOM05D003693 ORTHO05D004698 5.8e-59 231.1 157 73.9
THA.LOC104808730 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 5.8e-59 231.1 156 74.4
COL.COLO4_12338 Corchorus olitorius HOM05D003693 ORTHO05D004698 7.6e-59 230.7 160 71.9
Glyma.18G243300 Glycine max HOM05D003693 ORTHO05D004698 7.6e-59 230.7 155 75.5
Aqoxy5G04181 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 9.9e-59 230.3 155 73.5
Glyma.09G249100 Glycine max HOM05D003693 ORTHO05D004698 1.3e-58 229.9 155 74.2
Peaxi162Scf00071g01043 Petunia axillaris HOM05D003693 ORTHO05D004698 1.3e-58 229.9 155 75.5
Solyc01g087870.4 Solanum lycopersicum HOM05D003693 ORTHO05D004698 1.7e-58 229.6 156 74.4
HanXRQChr06g0179741 Helianthus annuus HOM05D003693 ORTHO05D004698 2.2e-58 229.2 159 72.3
Peaxi162Scf00694g00440 Petunia axillaris HOM05D003693 ORTHO05D004698 2.2e-58 229.2 155 73.5
PGR031G3615 Punica granatum HOM05D003693 ORTHO05D004698 2.2e-58 229.2 155 72.9
TAR369G0556 Trochodendron aralioides HOM05D003693 ORTHO05D004698 2.2e-58 229.2 159 71.7
Migut.B01266 Erythranthe guttata HOM05D003693 ORTHO05D004698 2.9e-58 228.8 156 73.7
Lalb_Chr01g0020541 Lupinus albus HOM05D003693 ORTHO05D004698 2.9e-58 228.8 165 70.9
Oeu014595.1 Olea europaea HOM05D003693 ORTHO05D004698 6.4e-58 227.6 155 72.3
Phvul.008G053200 Phaseolus vulgaris HOM05D003693 ORTHO05D004698 8.4e-58 227.3 155 74.2
MSTRG.17008 Avicennia marina HOM05D003693 ORTHO05D004698 1.1e-57 226.9 156 74.4
Sabra19G0063500 Salix brachista HOM05D003693 ORTHO05D004698 1.1e-57 226.9 155 72.9
THA.LOC104821617 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 1.1e-57 226.9 158 70.9
MSTRG.20559 Avicennia marina HOM05D003693 ORTHO05D004698 1.9e-57 226.1 155 73.5
VMungo1383G0289 Vigna mungo HOM05D003693 ORTHO05D004698 1.9e-57 226.1 158 74.1
Ah.10g038580 Amaranthus hybridus HOM05D003693 ORTHO05D004698 2.4e-57 225.7 155 72.9
arahy.Tifrunner.gnm1.ann1.55VZFW Arachis hypogaea HOM05D003693 ORTHO05D004698 2.4e-57 225.7 163 71.2
PSO384G0563 Papaver somniferum HOM05D003693 ORTHO05D004698 2.4e-57 225.7 159 70.4
SalBow5G4957 Salvia bowleyana HOM05D003693 ORTHO05D004698 2.4e-57 225.7 159 74.2
Gohir.D12G103600 Gossypium hirsutum HOM05D003693 ORTHO05D004698 3.2e-57 225.3 155 71.6
Potri.019G054500 Populus trichocarpa HOM05D003693 ORTHO05D004698 3.2e-57 225.3 155 71.6
Duzib268G0828 Durio zibethinus HOM05D003693 ORTHO05D004698 4.2e-57 224.9 156 71.2
Thecc.01G406700 Theobroma cacao HOM05D003693 ORTHO05D004698 4.2e-57 224.9 160 69.4
Medtr7g080270 Medicago truncatula HOM05D003693 ORTHO05D004698 5.4e-57 224.6 155 72.9
PSO339G5758 Papaver somniferum HOM05D003693 ORTHO05D004698 5.4e-57 224.6 159 70.4
CARHR100130 Cardamine hirsuta HOM05D003693 ORTHO05D004698 7.1e-57 224.2 155 70.3
Gohir.A12G100800 Gossypium hirsutum HOM05D003693 ORTHO05D004698 7.1e-57 224.2 155 71.0
Gorai.008G112800 Gossypium raimondii HOM05D003693 ORTHO05D004698 7.1e-57 224.2 155 71.0
PGR119G0062 Punica granatum HOM05D003693 ORTHO05D004698 7.1e-57 224.2 168 71.4
Sc10g0000370 Simmondsia chinensis HOM05D003693 ORTHO05D004698 1.2e-56 223.4 155 72.9
ClCG11G009710 Citrullus lanatus HOM05D003693 ORTHO05D004698 1.6e-56 223.0 160 69.4
Thhalv10002424m.g Eutrema salsugineum HOM05D003693 ORTHO05D004698 1.6e-56 223.0 155 71.0
CDE08G0281 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 2.1e-56 222.6 155 71.6
Aa31LG8G10790 Aethionema arabicum HOM05D003693 ORTHO05D004698 3.5e-56 221.9 158 69.6
EL10Ac2g04376 Beta vulgaris HOM05D003693 ORTHO05D004698 3.5e-56 221.9 157 72.0
BcaB06g26591 Brassica carinata HOM05D003693 ORTHO05D004698 4.6e-56 221.5 155 71.0
Sp3g21850 Schrenkiella parvula HOM05D003693 ORTHO05D004698 6.0e-56 221.1 155 70.3
Carub.0003s2444 Capsella rubella HOM05D003693 ORTHO05D004698 1.3e-55 219.9 155 71.0
Lj1g0027377 Lotus japonicus HOM05D003693 ORTHO05D004698 1.3e-55 219.9 164 68.9
Duzib133G0510 Durio zibethinus HOM05D003693 ORTHO05D004698 2.3e-55 219.2 160 68.8
Eucgr.H01402 Eucalyptus grandis HOM05D003693 ORTHO05D004698 2.3e-55 219.2 155 71.6
Eucgr.H01630 Eucalyptus grandis HOM05D003693 ORTHO05D004698 2.3e-55 219.2 155 71.6
Ca_07998_v3 Cicer arietinum L. HOM05D003693 ORTHO05D004698 3.9e-55 218.4 158 71.5
BcaC01g03357 Brassica carinata HOM05D003693 ORTHO05D004698 6.7e-55 217.6 155 70.3
BolC3t17596H Brassica oleracea HOM05D003693 ORTHO05D004698 8.7e-55 217.2 155 70.3
Lj8C726G3 Lonicera japonica HOM05D003693 ORTHO05D004698 8.7e-55 217.2 205 58.5
CDE04G2718 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.5e-54 216.5 157 70.1
TPR.G33878 Trifolium pratense HOM05D003693 ORTHO05D004698 1.5e-54 216.5 155 70.3
BcaC06g35626 Brassica carinata HOM05D003693 ORTHO05D004698 2.5e-54 215.7 155 71.0
C03p53370 Brassica napus HOM05D003693 ORTHO05D004698 2.5e-54 215.7 155 69.7
C07p12800 Brassica napus HOM05D003693 ORTHO05D004698 2.5e-54 215.7 155 71.0
BolC7t41766H Brassica oleracea HOM05D003693 ORTHO05D004698 2.5e-54 215.7 155 71.0
Psat3g102600 Pisum sativum HOM05D003693 ORTHO05D004698 2.5e-54 215.7 160 68.8
AT3G24090 Arabidopsis thaliana HOM05D003693 ORTHO05D004698 3.3e-54 215.3 155 69.0
AL3G39260 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 4.3e-54 214.9 155 68.4
AL8G20570 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 4.3e-54 214.9 155 68.4
A03p43420 Brassica napus HOM05D003693 ORTHO05D004698 5.6e-54 214.5 155 69.7
BraA03t13480Z Brassica rapa HOM05D003693 ORTHO05D004698 5.6e-54 214.5 155 69.7
CDE07G0727 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 5.6e-54 214.5 157 70.1
A07p08260 Brassica napus HOM05D003693 ORTHO05D004698 7.4e-54 214.2 155 69.0
Zm00001eb163520 Zea mays HOM05D003693 ORTHO05D004698 7.4e-54 214.2 162 66.7
unitig_0.g1393 Utricularia gibba HOM05D003693 ORTHO05D004698 9.6e-54 213.8 163 67.5
BcaB03g14607 Brassica carinata HOM05D003693 ORTHO05D004698 1.6e-53 213.0 155 68.4
BraA07t28609Z Brassica rapa HOM05D003693 ORTHO05D004698 1.6e-53 213.0 155 68.4
MBI19_g25011_MAGBIO Magnolia biondii HOM05D003693 ORTHO05D004698 1.6e-53 213.0 163 65.6
Sed0016989 Sechium edule HOM05D003693 ORTHO05D004698 1.6e-53 213.0 166 66.3
Lj9A641G59 Lonicera japonica HOM05D003693 ORTHO05D004698 2.1e-53 212.6 155 67.1
Haze_19361 Corylus avellana HOM05D003693 ORTHO05D004698 4.8e-53 211.5 187 61.5
SalBow6G5509 Salvia bowleyana HOM05D003693 ORTHO05D004698 4.8e-53 211.5 155 67.1
SalBow6G6742 Salvia bowleyana HOM05D003693 ORTHO05D004698 4.8e-53 211.5 155 67.1
CsaV3_2G010560 Cucumis sativus L. HOM05D003693 ORTHO05D004698 6.2e-53 211.1 160 67.5
MELO3C008557.2 Cucumis melo HOM05D003693 ORTHO05D004698 2.4e-52 209.1 171 62.0
SEGI_39911 Sequoiadendron giganteum HOM05D003693 ORTHO05D004698 2.4e-52 209.1 157 65.6
SMO301G0028 Selaginella moellendorffii HOM05D003693 ORTHO05D004698 4.0e-52 208.4 158 65.8
Pp3c2_32740 Physcomitrium patens HOM05D003693 ORTHO05D004698 5.3e-52 208.0 158 65.2
ATR1096G033 Amborella trichopoda HOM05D003693 ORTHO05D004698 1.2e-51 206.8 159 66.0
HPP92_019436 Vanilla planifolia HOM05D003693 ORTHO05D004698 3.2e-49 198.7 160 63.1
AagrBONN_evm.TU.Sc2ySwM_344.1788 Anthoceros agrestis HOM05D003693 ORTHO05D004698 9.3e-49 197.2 174 59.2
Mapoly0131s0027 Marchantia polymorpha HOM05D003693 ORTHO05D004698 1.2e-48 196.8 160 62.5
FAN14G5956 Fragaria x ananassa HOM05D003693 ORTHO05D004698 2.7e-48 195.7 136 74.3
SGA_v2.0_scaffold119G32763 Striga asiatica HOM05D003693 ORTHO05D004698 3.9e-47 191.8 155 63.9
AagrBONN_evm.TU.Sc2ySwM_340.50 Anthoceros agrestis HOM05D003693 ORTHO05D004698 9.0e-44 180.6 173 54.9
AL8G20490 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 8.7e-39 164.1 121 67.8
TPR.G34077 Trifolium pratense HOM05D003693 ORTHO05D004698 7.4e-38 161.0 155 58.1
Actinidia19423 Actinidia chinensis HOM05D003693 ORTHO05D004698 3.7e-37 158.7 156 58.3
MCO09G229 Micromonas commoda HOM05D003693 ORTHO05D004698 6.9e-36 154.5 155 51.6
Actinidia08353 Actinidia chinensis HOM05D003693 ORTHO05D004698 2.7e-32 142.5 84 78.6
Haze_26883 Corylus avellana HOM05D003693 ORTHO05D004698 2.7e-32 142.5 155 48.4
DCAR_029706 Daucus carota HOM05D003693 ORTHO05D004698 5.7e-30 134.8 77 80.5
Cre08.g375500 Chlamydomonas reinhardtii HOM05D003693 ORTHO05D004698 1.5e-27 126.7 169 37.3
Nitab4.5_0001676g0090 Nicotiana tabacum HOM05D003693 ORTHO05D021141 1.3e-26 123.6 71 81.7
CDE01G0629 Ceratophyllum demersum HOM05D000880 ORTHO05D007053 1.7e-26 123.2 72 79.2
CDE04G0915 Ceratophyllum demersum HOM05D003693 ORTHO05D021141 2.2e-26 122.9 72 79.2
Eucgr.H01403 Eucalyptus grandis HOM05D003693 ORTHO05D004698 8.5e-26 120.9 77 74.0
Eucgr.H01405 Eucalyptus grandis HOM05D003693 ORTHO05D004698 4.2e-25 118.6 121 57.0
PRCOL_00001226 Prasinoderma coloniale HOM05D003693 ORTHO05D004698 7.9e-24 114.4 159 42.1
CDE07G2079 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 3.3e-22 109.0 91 62.6
Actinidia23248 Actinidia chinensis HOM05D003693 ORTHO05D021141 3.1e-20 102.4 78 69.2
Lsat_1_v5_gn_3_45201 Lactuca sativa HOM05D003693 ORTHO05D004698 2.6e-19 99.4 53 83.0
Manes.13G004500 Manihot esculenta HOM05D003693 ORTHO05D004698 8.5e-18 94.4 91 60.4
Peaxi162Scf00071g01042 Petunia axillaris HOM05D003693 ORTHO05D021141 1.6e-16 90.1 78 64.1
Eucgr.H01634 Eucalyptus grandis HOM05D003693 ORTHO05D004698 5.2e-15 85.1 56 73.2
Eucgr.H01633 Eucalyptus grandis HOM05D003693 ORTHO05D004698 5.7e-14 81.6 122 45.9


User provided reference genes

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