Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1171500 Malus domestica HOM05D001122 ORTHO05D003607 4.0e-57 224.6 114 100.0
MD12G1184900 Malus domestica HOM05D001122 ORTHO05D003607 2.3e-41 172.2 99 84.8
Prupe.6G290000 Prunus persica HOM05D001122 ORTHO05D003607 1.1e-30 136.7 103 69.9
FvH4_6g10220 Fragaria vesca HOM05D001122 ORTHO05D003607 1.6e-26 122.9 99 63.6
FAN09G3749 Fragaria x ananassa HOM05D001122 ORTHO05D003607 1.6e-26 122.9 99 63.6
FAN02G3784 Fragaria x ananassa HOM05D001122 ORTHO05D003607 4.7e-26 121.3 98 61.2
FAN05G4057 Fragaria x ananassa HOM05D001122 ORTHO05D003607 8.1e-26 120.6 99 62.6
FAN05G5303 Fragaria x ananassa HOM05D001122 ORTHO05D003607 8.1e-26 120.6 99 62.6
RcHm_v2.0_Chr3g0460961 Rosa chinensis HOM05D001122 ORTHO05D003607 1.4e-25 119.8 98 64.3
Gohir.D10G117500 Gossypium hirsutum HOM05D001122 ORTHO05D003607 1.7e-23 112.8 102 56.9
FAN14G1450 Fragaria x ananassa HOM05D001122 ORTHO05D003607 8.4e-23 110.5 91 61.5
Gohir.A10G149300 Gossypium hirsutum HOM05D001122 ORTHO05D003607 4.2e-22 108.2 102 54.9
Gorai.011G129400 Gossypium raimondii HOM05D001122 ORTHO05D003607 4.2e-22 108.2 102 55.9
CiPaw.09G218700 Carya illinoinensis HOM05D001122 ORTHO05D003607 5.4e-22 107.8 109 51.4
Dinv11389 Davidia involucrata HOM05D001122 ORTHO05D003607 9.3e-22 107.1 109 51.4
Cfa017062 Carpinus fangiana HOM05D001122 ORTHO05D001877 2.7e-21 105.5 111 50.5
COL.COLO4_30004 Corchorus olitorius HOM05D001122 ORTHO05D003607 2.7e-21 105.5 100 52.0
Dinv25315 Davidia involucrata HOM05D001122 ORTHO05D003607 2.7e-21 105.5 112 53.6
Haze_21140 Corylus avellana HOM05D001122 ORTHO05D003607 4.6e-21 104.8 111 50.5
Duzib151G0339 Durio zibethinus HOM05D001122 ORTHO05D003607 4.6e-21 104.8 102 52.0
CiPaw.09G218600 Carya illinoinensis HOM05D001122 ORTHO05D003607 1.0e-20 103.6 109 50.5
Duzib212G0732 Durio zibethinus HOM05D001122 ORTHO05D003607 1.0e-20 103.6 102 50.0
vmacro20356 Vaccinium macrocarpon HOM05D001122 ORTHO05D003607 1.3e-20 103.2 108 52.8
CiPaw.10G164000 Carya illinoinensis HOM05D001122 ORTHO05D003607 1.7e-20 102.8 113 47.8
Rhsim05G0229000 Rhododendron simsii HOM05D001122 ORTHO05D003607 1.7e-20 102.8 120 50.0
Thecc.04G154900 Theobroma cacao HOM05D001122 ORTHO05D003607 2.3e-20 102.4 102 54.9
Gohir.A02G004800 Gossypium hirsutum HOM05D001122 ORTHO05D003607 3.9e-20 101.7 102 49.0
CiPaw.09G218500 Carya illinoinensis HOM05D001122 ORTHO05D003607 5.1e-20 101.3 97 53.6
Ciclev10011064m.g Citrus clementina HOM05D001122 ORTHO05D001877 8.7e-20 100.5 103 49.5
TAR623G0962 Trochodendron aralioides HOM05D001122 ORTHO05D001877 8.7e-20 100.5 110 55.5
Atru.chr8.2374 Acer truncatum HOM05D001122 ORTHO05D003607 1.1e-19 100.1 97 54.6
Lj2A62T70 Lonicera japonica HOM05D001122 ORTHO05D003607 1.5e-19 99.8 109 49.5
TAR623G1430 Trochodendron aralioides HOM05D001122 ORTHO05D001877 1.5e-19 99.8 99 57.6
Gohir.D02G005100 Gossypium hirsutum HOM05D001122 ORTHO05D003607 1.9e-19 99.4 102 47.1
Manes.09G115700 Manihot esculenta HOM05D001122 ORTHO05D003607 1.9e-19 99.4 109 48.6
Gorai.005G005800 Gossypium raimondii HOM05D001122 ORTHO05D003607 2.5e-19 99.0 102 47.1
Manes.08G173200 Manihot esculenta HOM05D001122 ORTHO05D003607 2.5e-19 99.0 109 47.7
Dinv11390 Davidia involucrata HOM05D001122 ORTHO05D003607 7.3e-19 97.4 103 50.5
GSVIVG01030215001 Vitis vinifera HOM05D001122 ORTHO05D003607 4.8e-18 94.7 109 47.7
CANSAT35G1279 Cannabis sativa HOM05D001122 ORTHO05D003607 6.2e-18 94.4 98 49.0
Migut.J00062 Erythranthe guttata HOM05D001122 ORTHO05D003607 1.4e-17 93.2 97 49.5
SGA_v2.0_scaffold373G50170 Striga asiatica HOM05D001122 ORTHO05D003607 1.4e-17 93.2 98 51.0
Actinidia32558 Actinidia chinensis HOM05D000044 ORTHO05D003607 1.8e-17 92.8 111 43.2
CSS0024307 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D003607 1.8e-17 92.8 110 45.5
CSS0038239 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D003607 1.8e-17 92.8 110 47.3
PGR031G1876 Punica granatum HOM05D001122 ORTHO05D003607 3.1e-17 92.0 98 48.0
Potri.006G107300 Populus trichocarpa HOM05D001122 ORTHO05D003607 4.0e-17 91.7 109 43.1
TWI53G1003 Tripterygium wilfordii HOM05D001122 ORTHO05D003607 4.0e-17 91.7 98 45.9
Rhsim04G0122900 Rhododendron simsii HOM05D001122 ORTHO05D003607 6.9e-17 90.9 109 45.0
Glyma.09G277200 Glycine max HOM05D001122 ORTHO05D003607 1.2e-16 90.1 106 45.3
THA.LOC104806073 Tarenaya hassleriana HOM05D001122 ORTHO05D003607 1.2e-16 90.1 97 49.5
TWI77G0482 Tripterygium wilfordii HOM05D001122 ORTHO05D003607 1.5e-16 89.7 98 44.9
MSTRG.18957 Avicennia marina HOM05D001122 ORTHO05D003607 3.4e-16 88.6 104 46.2
Glyma.18G212100 Glycine max HOM05D001122 ORTHO05D003607 3.4e-16 88.6 98 44.9
TWI74G0479 Tripterygium wilfordii HOM05D001122 ORTHO05D003607 4.5e-16 88.2 98 44.9
PGSC0003DMG400026572 Solanum tuberosum HOM05D001122 ORTHO05D003607 5.8e-16 87.8 104 46.2
QL07p032778 Quercus lobata HOM05D001122 ORTHO05D003607 7.6e-16 87.4 98 45.9
Potri.016G133400 Populus trichocarpa HOM05D001122 ORTHO05D003607 9.9e-16 87.0 109 43.1
Glyma.18G211900 Glycine max HOM05D001122 ORTHO05D003607 1.3e-15 86.7 97 47.4
Peaxi162Scf00732g00449 Petunia axillaris HOM05D001122 ORTHO05D003607 1.7e-15 86.3 101 45.5
Solyc09g042700.4 Solanum lycopersicum HOM05D001122 ORTHO05D003607 1.7e-15 86.3 101 45.5
VMungo1383G1499 Vigna mungo HOM05D001122 ORTHO05D003607 2.2e-15 85.9 98 45.9
Lj3g0009835 Lotus japonicus HOM05D001122 ORTHO05D003607 2.9e-15 85.5 97 45.4
Sabra04G0151000 Salix brachista HOM05D001122 ORTHO05D001877 4.9e-15 84.7 113 39.8
vmacro08930 Vaccinium macrocarpon HOM05D001122 ORTHO05D003607 4.9e-15 84.7 105 41.9
Glyma.19G111400 Glycine max HOM05D001122 ORTHO05D003607 8.4e-15 84.0 98 44.9
Hma1.2p1_0174F.1_g077000 Hydrangea macrophylla HOM05D001122 ORTHO05D003607 8.4e-15 84.0 106 45.3
Glyma.09G277100 Glycine max HOM05D001122 ORTHO05D003607 1.1e-14 83.6 98 43.9
Glyma.19G111500 Glycine max HOM05D001122 ORTHO05D003607 1.4e-14 83.2 106 43.4
Lj1g0017699 Lotus japonicus HOM05D001122 ORTHO05D003607 1.4e-14 83.2 98 44.9
Oeu060447.2 Olea europaea HOM05D001122 ORTHO05D003607 1.4e-14 83.2 104 43.3
Actinidia20784 Actinidia chinensis HOM05D001122 ORTHO05D003607 1.9e-14 82.8 108 39.8
vmacro23407 Vaccinium macrocarpon HOM05D001122 ORTHO05D003607 1.9e-14 82.8 116 42.2
Lj3A942T86 Lonicera japonica HOM05D001122 ORTHO05D003607 2.4e-14 82.4 98 46.9
VMungo1383G1340 Vigna mungo HOM05D001122 ORTHO05D003607 2.4e-14 82.4 98 43.9
arahy.Tifrunner.gnm1.ann1.DF4ABA Arachis hypogaea HOM05D001122 ORTHO05D003607 3.2e-14 82.0 98 41.8
arahy.Tifrunner.gnm1.ann1.U3MJA7 Arachis hypogaea HOM05D001122 ORTHO05D003607 3.2e-14 82.0 98 41.8
GSVIVG01030214001 Vitis vinifera HOM05D001122 ORTHO05D003607 3.2e-14 82.0 111 43.2
Sopen09g015490 Solanum pennellii HOM05D001122 ORTHO05D003607 4.2e-14 81.6 101 42.6
Ca_19773_v3 Cicer arietinum L. HOM05D001122 ORTHO05D003607 5.4e-14 81.3 97 40.2
Lalb_Chr04g0259291 Lupinus albus HOM05D001122 ORTHO05D003607 9.3e-14 80.5 98 43.9
Sed0009478 Sechium edule HOM05D001122 ORTHO05D003607 1.6e-13 79.7 98 40.8
Eucgr.A00687 Eucalyptus grandis HOM05D001122 ORTHO05D003607 2.7e-13 79.0 98 40.8
Hund19801 Selenicereus undatus HOM05D001122 ORTHO05D003607 2.7e-13 79.0 99 40.4
Lsat_1_v5_gn_9_38061 Lactuca sativa HOM05D001122 ORTHO05D003607 3.5e-13 78.6 102 38.2
Phvul.008G084800 Phaseolus vulgaris HOM05D001122 ORTHO05D003607 3.5e-13 78.6 101 41.6
Psat7g230080 Pisum sativum HOM05D001122 ORTHO05D003607 3.5e-13 78.6 95 41.1
MELO3C026054.2 Cucumis melo HOM05D001122 ORTHO05D003607 6.0e-13 77.8 99 39.4
ECA247G0333 Erigeron canadensis HOM05D001122 ORTHO05D003607 6.0e-13 77.8 102 39.2
Sed0026963 Sechium edule HOM05D001122 ORTHO05D003607 7.9e-13 77.4 100 41.0
Aqoxy2G00741 Aquilegia oxysepala HOM05D001122 ORTHO05D003607 1.3e-12 76.6 100 42.0
TPR.G4963 Trifolium pratense HOM05D001122 ORTHO05D003607 1.3e-12 76.6 96 42.7
VMungo0331G1328 Vigna mungo HOM05D001122 ORTHO05D003607 1.3e-12 76.6 97 40.2
ClCG04G006470 Citrullus lanatus HOM05D001122 ORTHO05D003607 1.8e-12 76.3 98 37.8
Phvul.008G084700 Phaseolus vulgaris HOM05D001122 ORTHO05D003607 2.3e-12 75.9 97 40.2
Cc06_g00540 Coffea canephora HOM05D001122 ORTHO05D003607 3.0e-12 75.5 106 42.5
PGR004G2520 Punica granatum HOM05D001122 ORTHO05D003607 3.0e-12 75.5 97 44.3
PSO339G4844 Papaver somniferum HOM05D001122 ORTHO05D003607 3.9e-12 75.1 99 45.5
PSO384G2267 Papaver somniferum HOM05D001122 ORTHO05D003607 3.9e-12 75.1 99 44.4
Sabra06G0083500 Salix brachista HOM05D001122 ORTHO05D001877 3.9e-12 75.1 51 64.7
SalBow8G0025 Salvia bowleyana HOM05D001010 ORTHO05D002439 3.9e-12 75.1 95 44.2
SalBow8G5022 Salvia bowleyana HOM05D012573 ORTHO05D007950 3.9e-12 75.1 95 44.2
Medtr7g072560 Medicago truncatula HOM05D001122 ORTHO05D003607 6.7e-12 74.3 97 40.2
Lalb_Chr12g0207581 Lupinus albus HOM05D001122 ORTHO05D003607 1.1e-11 73.6 90 42.2
BolC8t50313H Brassica oleracea HOM05D001122 ORTHO05D003607 1.5e-11 73.2 104 37.5
Medtr4g029040 Medicago truncatula HOM05D001122 ORTHO05D003607 1.5e-11 73.2 95 37.9
Sc02g0000830 Simmondsia chinensis HOM05D001122 ORTHO05D003607 1.5e-11 73.2 99 39.4
EL10Ac7g17057 Beta vulgaris HOM05D001122 ORTHO05D003607 2.5e-11 72.4 95 41.1
CsaV3_UNG105770 Cucumis sativus L. HOM05D001122 ORTHO05D003607 2.5e-11 72.4 99 37.4
TPR.G4415 Trifolium pratense HOM05D001122 ORTHO05D003607 2.5e-11 72.4 97 39.2
DCAR_010960 Daucus carota HOM05D001122 ORTHO05D003607 3.3e-11 72.0 105 39.0
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 4.3e-11 71.6 98 41.8
Ca_07748_v3 Cicer arietinum L. HOM05D001122 ORTHO05D003607 4.3e-11 71.6 97 39.2
Glyma.01G131400 Glycine max HOM05D001122 ORTHO05D003607 5.6e-11 71.2 97 36.1
A03p48470 Brassica napus HOM05D001122 ORTHO05D003607 7.4e-11 70.9 98 39.8
AUR62006354 Chenopodium quinoa HOM05D001122 ORTHO05D003607 7.4e-11 70.9 95 40.0
AUR62029684 Chenopodium quinoa HOM05D001122 ORTHO05D003607 7.4e-11 70.9 95 41.1
Oeu064875.2 Olea europaea HOM05D001122 ORTHO05D003607 7.4e-11 70.9 70 45.7
Carub.0005s1807 Capsella rubella HOM05D001122 ORTHO05D003607 9.6e-11 70.5 98 39.8
SHI12907 Sapria himalayana HOM05D001122 ORTHO05D003607 1.3e-10 70.1 68 50.0
BcaC06g33346 Brassica carinata HOM05D001122 ORTHO05D003607 1.6e-10 69.7 98 38.8
BolC7t45172H Brassica oleracea HOM05D001122 ORTHO05D003607 1.6e-10 69.7 98 38.8
CDE04G1276 Ceratophyllum demersum HOM05D001122 ORTHO05D003607 1.6e-10 69.7 100 37.0
C07p46560 Brassica napus HOM05D001122 ORTHO05D003607 2.1e-10 69.3 98 39.8
Haze_21146 Corylus avellana HOM05D000055 ORTHO05D003607 2.1e-10 69.3 109 35.8
CsaV3_4G027050 Cucumis sativus L. HOM05D001122 ORTHO05D003607 2.8e-10 68.9 88 39.8
Eucgr.K01273 Eucalyptus grandis HOM05D001122 ORTHO05D003607 2.8e-10 68.9 98 45.9
Hma1.2p1_0118F.1_g056550 Hydrangea macrophylla HOM05D001122 ORTHO05D003607 2.8e-10 68.9 63 52.4
SGA_v2.0_scaffold85G26650 Striga asiatica HOM05D001122 ORTHO05D003607 2.8e-10 68.9 52 53.8
BcaB01g00484 Brassica carinata HOM05D001122 ORTHO05D003607 6.2e-10 67.8 98 36.7
A09p44880 Brassica napus HOM05D001122 ORTHO05D003607 6.2e-10 67.8 98 36.7
C08p26930 Brassica napus HOM05D001122 ORTHO05D003607 6.2e-10 67.8 98 36.7
BraA09t39949Z Brassica rapa HOM05D001122 ORTHO05D003607 6.2e-10 67.8 98 36.7
BraA03t13952Z Brassica rapa HOM05D001122 ORTHO05D003607 8.1e-10 67.4 98 37.8
Nitab4.5_0010742g0010 Nicotiana tabacum HOM05D001122 ORTHO05D003607 8.1e-10 67.4 60 50.0
Sp5g10550 Schrenkiella parvula HOM05D001122 ORTHO05D003607 8.1e-10 67.4 98 37.8
ATR0681G065 Amborella trichopoda HOM05D001122 ORTHO05D003607 1.1e-09 67.0 97 41.2
AL5G32190 Arabidopsis lyrata HOM05D001122 ORTHO05D003607 1.4e-09 66.6 98 38.8
Nn2g13337 Nelumbo nucifera HOM05D001122 ORTHO05D003607 1.4e-09 66.6 106 39.6
MBI15_g26245_MAGBIO Magnolia biondii HOM05D001122 ORTHO05D003607 2.4e-09 65.9 47 61.7
Actinidia29048 Actinidia chinensis HOM05D001122 ORTHO05D001877 3.1e-09 65.5 109 35.8
BcaB01g00423 Brassica carinata HOM05D001122 ORTHO05D003607 3.1e-09 65.5 98 35.7
BcaB01g00424 Brassica carinata HOM05D001122 ORTHO05D003607 3.1e-09 65.5 98 35.7
CSS0043268 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D003607 3.1e-09 65.5 60 48.3
CAN.G484.75 Capsicum annuum HOM05D001122 ORTHO05D003607 3.1e-09 65.5 50 56.0
Hund03784 Selenicereus undatus HOM05D001122 ORTHO05D003607 3.1e-09 65.5 97 38.1
Nitab4.5_0000126g0040 Nicotiana tabacum HOM05D001122 ORTHO05D003607 4.0e-09 65.1 60 48.3
Psat3g120560 Pisum sativum HOM05D001122 ORTHO05D003607 5.3e-09 64.7 99 37.4
PGR004G2314 Punica granatum HOM05D001122 ORTHO05D003607 6.9e-09 64.3 103 39.8
THA.LOC104823315 Tarenaya hassleriana HOM05D001122 ORTHO05D003607 1.2e-08 63.5 98 36.7
AT3G51730 Arabidopsis thaliana HOM05D001122 ORTHO05D003607 1.5e-08 63.2 98 35.7
arahy.Tifrunner.gnm1.ann1.MH7SIY Arachis hypogaea HOM05D001122 ORTHO05D001877 1.5e-08 63.2 100 36.0
CAN.G738.7 Capsicum annuum HOM05D001122 ORTHO05D003607 1.5e-08 63.2 104 39.4
Lalb_Chr13g0291881 Lupinus albus HOM05D001122 ORTHO05D003607 1.5e-08 63.2 93 34.4
Peaxi162Scf00009g00811 Petunia axillaris HOM05D001122 ORTHO05D003607 1.5e-08 63.2 104 35.6
DCAR_015347 Daucus carota HOM05D001122 ORTHO05D001877 2.0e-08 62.8 59 45.8
Ah.15g090210 Amaranthus hybridus HOM05D001122 ORTHO05D003607 3.4e-08 62.0 95 35.8
BcaC06g33004 Brassica carinata HOM05D001122 ORTHO05D003607 4.5e-08 61.6 98 35.7
Duzib268G0086 Durio zibethinus HOM05D001122 ORTHO05D003607 5.8e-08 61.2 52 46.2
Thhalv10010716m.g Eutrema salsugineum HOM05D001122 ORTHO05D003607 7.6e-08 60.8 54 51.9
CARHR161360 Cardamine hirsuta HOM05D001122 ORTHO05D003607 9.9e-08 60.5 98 33.7
Zm00001eb350240 Zea mays HOM05D001122 ORTHO05D003607 9.9e-08 60.5 43 60.5
arahy.Tifrunner.gnm1.ann1.J7KKGP Arachis hypogaea HOM05D001122 ORTHO05D003607 2.2e-07 59.3 91 34.1
Aa31LG5G11660 Aethionema arabicum HOM05D001122 ORTHO05D003607 3.8e-07 58.5 99 35.4
Cpa.g.sc86.26 Carica papaya HOM05D001122 ORTHO05D003607 1.1e-06 57.0 64 40.6
Solyc10g085430.3 Solanum lycopersicum HOM05D001122 ORTHO05D003607 1.1e-06 57.0 105 37.1
unitig_27.g24880 Utricularia gibba HOM05D001122 ORTHO05D003607 1.1e-06 57.0 101 37.6
Sopen10g034880 Solanum pennellii HOM05D001122 ORTHO05D003607 1.4e-06 56.6 104 37.5
Zm00001eb123280 Zea mays HOM05D001122 ORTHO05D003607 1.4e-06 56.6 89 33.7
unitig_699.g19371 Utricularia gibba HOM05D001122 ORTHO05D003607 1.9e-06 56.2 101 32.7
HanXRQChr10g0286291 Helianthus annuus HOM05D001122 ORTHO05D003607 3.2e-06 55.5 47 46.8
Nitab4.5_0009418g0020 Nicotiana tabacum HOM05D001122 ORTHO05D003607 4.2e-06 55.1 103 35.0
Nitab4.5_0000381g0010 Nicotiana tabacum HOM05D001122 ORTHO05D003607 7.1e-06 54.3 104 34.6
Os05g0335100 Oryza sativa ssp. japonica HOM05D001122 ORTHO05D003607 9.3e-06 53.9 87 36.8


User provided reference genes

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