Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 7.2e-265 916.8 489 100.0
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 6.8e-215 750.7 489 85.1
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 2.4e-175 619.4 504 73.8
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 3.1e-135 486.1 522 59.6
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 4.7e-123 445.7 521 57.0
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 4.7e-123 445.7 523 55.4
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 2.9e-120 436.4 486 59.1
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 7.0e-119 431.8 507 55.2
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 2.7e-118 429.9 509 54.8
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 3.5e-118 429.5 499 55.1
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 4.3e-116 422.5 512 55.3
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 1.2e-115 421.0 508 52.2
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.2e-115 421.0 519 54.5
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 2.3e-114 416.8 506 54.2
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 3.1e-114 416.4 507 52.3
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 4.9e-112 409.1 505 51.5
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.9e-112 409.1 507 52.9
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.1e-111 407.9 507 52.9
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 3.2e-111 406.4 503 54.1
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 3.2e-111 406.4 504 53.4
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 9.2e-111 404.8 507 52.7
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 8.1e-107 391.7 509 51.5
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.8e-106 390.6 510 52.4
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.5e-105 387.5 504 51.6
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 3.4e-105 386.3 510 52.5
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 1.2e-102 377.9 519 51.4
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.1e-102 377.1 504 50.0
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.3e-101 374.4 517 51.3
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 1.1e-100 371.3 499 50.1
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 5.6e-100 369.0 517 51.3
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 8.1e-99 365.2 511 46.2
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 5.2e-98 362.5 503 47.3
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 2.2e-96 357.1 505 49.7
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 1.4e-95 354.4 496 46.6
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 3.2e-95 353.2 509 49.5
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 3.5e-94 349.7 505 47.7
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 2.3e-93 347.1 505 46.1
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 7.3e-92 342.0 501 50.3
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 9.6e-92 341.7 504 48.0
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 1.3e-91 341.3 499 44.7
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 3.1e-90 336.7 498 45.4
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.3e-88 331.3 506 44.3
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.2e-87 326.6 495 45.1
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 7.1e-87 325.5 510 46.3
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 1.6e-86 324.3 508 42.9
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 5.1e-85 319.3 504 46.6
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 8.7e-85 318.5 510 46.9
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 8.7e-85 318.5 501 45.5
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.6e-84 315.8 512 44.9
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 9.6e-84 315.1 501 44.3
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 9.6e-84 315.1 518 46.5
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.8e-83 313.5 428 50.2
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 6.2e-83 312.4 516 45.2
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 1.1e-82 311.6 453 48.1
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.4e-82 311.2 508 42.7
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.4e-82 311.2 442 50.5
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 5.3e-82 309.3 500 46.6
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.4e-81 306.6 513 44.2
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.3e-80 304.7 416 49.8
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 1.7e-80 304.3 502 44.4
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 4.9e-80 302.8 498 42.8
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.4e-79 301.2 501 42.5
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 2.4e-79 300.4 501 42.1
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 2.4e-79 300.4 506 45.1
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 7.1e-79 298.9 506 47.0
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 1.2e-78 298.1 502 44.8
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 1.2e-78 298.1 497 44.3
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.3e-77 294.7 511 42.7
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.8e-77 294.3 495 40.8
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 3.9e-77 293.1 508 43.7
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 3.9e-77 293.1 510 40.6
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 8.7e-77 292.0 506 43.1
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 8.7e-77 292.0 505 45.5
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.9e-76 290.8 506 42.3
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 1.6e-75 287.7 503 40.6
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 2.1e-75 287.3 501 43.1
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 6.2e-75 285.8 368 47.3
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 8.1e-75 285.4 512 42.6
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 8.1e-75 285.4 433 46.2
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 2.4e-74 283.9 494 40.7
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 1.5e-73 281.2 494 41.7
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 4.5e-73 279.6 500 43.8
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 1.0e-72 278.5 449 46.1
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 6.5e-72 275.8 469 45.6
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 1.9e-71 274.2 503 40.4
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 4.2e-71 273.1 496 38.7
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 2.1e-70 270.8 496 41.7
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 2.7e-70 270.4 469 46.7
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.0e-69 268.5 513 43.5
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 3.9e-69 266.5 514 39.7
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.9e-69 266.5 529 42.9
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.5e-68 263.8 406 44.1
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 4.3e-68 263.1 508 43.5
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 7.4e-68 262.3 477 40.7
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 2.1e-67 260.8 512 40.4
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 4.8e-67 259.6 504 40.1
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 5.3e-66 256.1 517 40.6
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 2.9e-64 250.4 498 40.2
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 2.5e-63 247.3 517 41.0
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 9.3e-63 245.4 516 40.9
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.3e-61 241.5 478 42.9
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 8.7e-61 238.8 457 38.3
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 1.1e-60 238.4 509 41.5
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.7e-60 236.1 492 41.9
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 7.4e-60 235.7 504 36.3
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 3.4e-57 226.9 456 38.6
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.3e-56 224.9 414 41.1
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.9e-56 223.8 498 40.6
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 6.5e-56 222.6 450 42.0
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 1.1e-55 221.9 430 40.2
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.1e-55 221.9 431 39.7
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 4.2e-55 219.9 445 39.1
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 1.2e-54 218.4 435 40.0
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 3.6e-54 216.9 431 38.5
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 1.0e-53 215.3 435 39.5
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 1.0e-53 215.3 432 40.3
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 5.1e-53 213.0 422 41.7
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 4.4e-52 209.9 515 36.1
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 8.5e-48 195.7 475 38.1
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 2.1e-46 191.0 465 38.1
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.1e-46 191.0 437 41.0
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 7.9e-46 189.1 492 32.9
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 7.9e-46 189.1 502 33.3
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 1.1e-44 185.3 445 37.1
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 2.0e-44 184.5 396 36.1
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 2.6e-44 184.1 396 36.4
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 2.6e-44 184.1 396 36.1
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 1.7e-43 181.4 457 35.4
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 4.8e-43 179.9 459 35.5
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 6.3e-43 179.5 467 38.1
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 7.0e-42 176.0 491 33.8
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.6e-41 174.9 265 43.4
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.0e-41 174.5 171 55.6
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 1.5e-39 168.3 363 36.9
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 2.1e-38 164.5 359 37.3
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 6.7e-37 159.5 426 37.3
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 5.7e-36 156.4 396 33.3
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.7e-35 154.8 346 36.7
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.8e-35 154.1 467 31.7
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 8.5e-32 142.5 131 59.5
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 4.2e-31 140.2 349 34.4
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.0e-29 135.6 298 34.9
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 4.0e-29 133.7 386 30.8
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 5.2e-29 133.3 451 30.6
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 6.8e-29 132.9 192 44.8
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 8.8e-29 132.5 511 31.1
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 4.4e-28 130.2 123 67.5
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 7.5e-28 129.4 457 30.4
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 4.8e-27 126.7 220 41.8
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 1.6e-25 121.7 510 27.5
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 7.7e-25 119.4 123 52.8
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 1.3e-24 118.6 273 37.4
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 5.0e-24 116.7 146 48.6
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 2.5e-23 114.4 136 48.5
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 1.7e-16 91.7 110 47.3
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 8.6e-16 89.4 345 29.0
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 2.8e-14 84.3 54 72.2
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 4.7e-14 83.6 418 27.0
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 6.1e-14 83.2 282 28.4
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.3e-13 81.3 147 39.5
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 6.8e-13 79.7 209 31.6
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 4.4e-12 77.0 64 57.8
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 7.5e-12 76.3 363 25.1
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 2.2e-11 74.7 233 27.9
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 2.2e-11 74.7 387 30.5
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 3.7e-11 73.9 116 38.8
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 6.4e-11 73.2 116 38.8
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 1.4e-10 72.0 45 68.9
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.5e-09 67.4 371 27.8
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 4.6e-09 67.0 197 29.4
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 2.3e-08 64.7 113 33.6
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 8.6e-08 62.8 65 47.7
MD04G1090200 Malus domestica HOM05D003987 ORTHO05D004532 2.5e-07 61.2 39 76.9
FAN08G1429 Fragaria x ananassa HOM05D003987 ORTHO05D004532 5.6e-07 60.1 101 45.5
unitig_26.g9098 Utricularia gibba HOM05D003987 ORTHO05D004532 9.5e-07 59.3 138 32.6
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 9.5e-07 59.3 168 36.3


User provided reference genes

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