Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 8.4e-54 213.4 104 100.0
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 9.3e-45 183.3 103 90.3
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 2.3e-35 152.1 103 74.8
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 4.3e-34 147.9 103 72.8
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.8e-33 144.4 95 75.8
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.8e-33 144.4 95 75.8
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 4.8e-33 144.4 95 75.8
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.2e-33 144.1 95 74.7
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 1.1e-32 143.3 95 74.7
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.8e-32 142.5 108 69.4
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 3.1e-32 141.7 103 73.8
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 3.1e-32 141.7 105 68.6
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.5e-31 139.4 104 72.1
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 2.0e-31 139.0 103 69.9
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 2.6e-31 138.7 103 69.9
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 4.5e-31 137.9 103 69.9
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 4.5e-31 137.9 103 68.9
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 5.8e-31 137.5 108 65.7
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 1.3e-30 136.3 103 68.0
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 1.3e-30 136.3 103 68.0
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 1.7e-30 136.0 103 66.0
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 2.9e-30 135.2 103 68.0
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 4.9e-30 134.4 104 65.4
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 4.9e-30 134.4 103 68.9
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 6.5e-30 134.0 92 73.9
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 6.5e-30 134.0 103 67.0
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 6.5e-30 134.0 103 65.0
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 8.4e-30 133.7 103 67.0
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 8.4e-30 133.7 105 65.7
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 1.1e-29 133.3 98 68.4
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 1.1e-29 133.3 103 67.0
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 1.9e-29 132.5 105 65.7
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 2.5e-29 132.1 103 67.0
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 2.5e-29 132.1 103 64.1
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 2.5e-29 132.1 103 64.1
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 2.5e-29 132.1 103 64.1
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.5e-29 132.1 103 66.0
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 3.2e-29 131.7 103 66.0
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 3.2e-29 131.7 111 61.3
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 5.5e-29 131.0 101 66.3
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 5.5e-29 131.0 105 68.6
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 7.1e-29 130.6 103 66.0
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 9.3e-29 130.2 108 62.0
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 9.3e-29 130.2 103 65.0
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 9.3e-29 130.2 103 65.0
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 9.3e-29 130.2 103 65.0
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 1.2e-28 129.8 103 66.0
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 1.2e-28 129.8 103 67.0
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 1.2e-28 129.8 103 66.0
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.6e-28 129.4 103 65.0
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.6e-28 129.4 104 64.4
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.6e-28 129.4 103 63.1
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 2.1e-28 129.0 104 62.5
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 2.1e-28 129.0 93 66.7
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 2.1e-28 129.0 103 63.1
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 2.7e-28 128.6 103 65.0
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 2.7e-28 128.6 103 65.0
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.7e-28 128.6 103 64.1
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 3.5e-28 128.3 104 66.3
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 6.0e-28 127.5 102 66.7
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 6.0e-28 127.5 103 64.1
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 6.0e-28 127.5 103 64.1
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 6.0e-28 127.5 103 64.1
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 6.0e-28 127.5 104 63.5
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 6.0e-28 127.5 99 68.7
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 6.0e-28 127.5 99 68.7
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 6.0e-28 127.5 93 68.8
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 7.9e-28 127.1 103 64.1
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 7.9e-28 127.1 111 63.1
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 7.9e-28 127.1 94 70.2
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 7.9e-28 127.1 104 62.5
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 7.9e-28 127.1 103 62.1
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 7.9e-28 127.1 103 62.1
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 7.9e-28 127.1 103 62.1
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 1.0e-27 126.7 103 60.2
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 1.0e-27 126.7 103 62.1
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 1.8e-27 125.9 103 61.2
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.8e-27 125.9 104 64.4
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 1.8e-27 125.9 103 65.0
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 2.3e-27 125.6 105 65.7
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.3e-27 125.6 103 64.1
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 3.9e-27 124.8 104 62.5
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 5.1e-27 124.4 105 61.9
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 5.1e-27 124.4 105 61.9
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 5.1e-27 124.4 107 59.8
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 6.7e-27 124.0 103 60.2
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 8.7e-27 123.6 103 61.2
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 8.7e-27 123.6 98 62.2
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.1e-26 123.2 107 58.9
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 1.9e-26 122.5 102 65.7
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 2.5e-26 122.1 94 64.9
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 2.5e-26 122.1 103 57.3
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 4.3e-26 121.3 105 61.0
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 5.7e-26 120.9 103 61.2
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 5.7e-26 120.9 103 57.3
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 9.6e-26 120.2 107 61.7
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 9.6e-26 120.2 101 58.4
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.1e-25 119.0 132 52.3
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.1e-25 119.0 132 52.3
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.1e-25 119.0 132 52.3
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 2.1e-25 119.0 103 56.3
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 3.7e-25 118.2 103 59.2
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 4.8e-25 117.9 96 62.5
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 4.8e-25 117.9 103 55.3
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 6.2e-25 117.5 93 64.5
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.4e-24 116.3 98 62.2
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.4e-24 116.3 98 62.2
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.4e-24 116.3 109 57.8
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 4.1e-24 114.8 100 60.0
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 5.3e-24 114.4 102 56.9
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 5.3e-24 114.4 98 58.2
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 6.9e-24 114.0 103 60.2
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.2e-23 113.2 89 62.9
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.2e-23 113.2 100 59.0
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.5e-23 112.8 131 48.9
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 2.0e-23 112.5 98 57.1
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 4.5e-23 111.3 105 56.2
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 4.5e-23 111.3 105 59.0
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 4.5e-23 111.3 98 57.1
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 7.6e-23 110.5 105 54.3
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 1.0e-22 110.2 103 51.5
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 1.1e-21 106.7 97 57.7
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.1e-21 106.7 69 72.5
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.3e-21 103.6 98 57.1
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 2.1e-20 102.4 100 53.0
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.3e-18 95.1 93 53.8
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 5.7e-18 94.4 70 62.9
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 4.1e-16 88.2 77 63.6
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 5.0e-14 81.3 51 70.6
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 1.2e-12 76.6 93 40.9
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.0e-11 73.6 44 70.5
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 9.7e-10 67.0 75 40.0
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 6.3e-09 64.3 43 65.1
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 6.9e-08 60.8 42 59.5
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 2.6e-07 58.9 59 55.9
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 4.5e-07 58.2 80 35.0


User provided reference genes

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