Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 7.3e-43 176.8 87 100.0
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 2.8e-34 148.3 88 86.4
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 3.5e-29 131.3 95 75.8
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 1.1e-22 109.8 92 66.3
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 3.2e-22 108.2 92 65.2
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 4.1e-22 107.8 92 66.3
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.7e-20 102.4 96 54.2
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 8.6e-20 100.1 95 54.7
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 1.5e-19 99.4 89 61.8
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 1.5e-19 99.4 89 61.8
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.5e-19 99.4 84 60.7
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 2.5e-19 98.6 91 61.5
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 2.5e-19 98.6 90 58.9
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 3.3e-19 98.2 102 56.9
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 4.3e-19 97.8 84 59.5
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 9.5e-19 96.7 95 53.7
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 1.6e-18 95.9 94 57.4
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 1.6e-18 95.9 87 55.2
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 2.1e-18 95.5 90 58.9
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 2.1e-18 95.5 95 55.8
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 2.8e-18 95.1 82 62.2
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 6.2e-18 94.0 91 56.0
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 8.1e-18 93.6 82 63.4
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 8.1e-18 93.6 82 63.4
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.8e-17 92.4 82 62.2
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 2.4e-17 92.0 85 58.8
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 3.1e-17 91.7 84 61.9
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 3.1e-17 91.7 97 50.5
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 3.1e-17 91.7 80 60.0
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 4.0e-17 91.3 86 55.8
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 4.0e-17 91.3 98 52.0
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 5.2e-17 90.9 96 51.0
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 6.8e-17 90.5 90 55.6
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 1.2e-16 89.7 94 54.3
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 1.2e-16 89.7 90 54.4
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 1.5e-16 89.4 86 55.8
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 2.0e-16 89.0 71 64.8
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 2.0e-16 89.0 84 56.0
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 2.6e-16 88.6 84 58.3
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 2.6e-16 88.6 92 55.4
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 3.4e-16 88.2 81 61.7
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 3.4e-16 88.2 90 54.4
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 5.8e-16 87.4 107 52.3
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 7.6e-16 87.0 87 55.2
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 7.6e-16 87.0 94 53.2
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 1.3e-15 86.3 94 53.2
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 1.3e-15 86.3 90 53.3
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 3.8e-15 84.7 82 61.0
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 3.8e-15 84.7 90 52.2
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 8.4e-15 83.6 93 57.0
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 1.1e-14 83.2 80 56.2
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 1.4e-14 82.8 86 52.3
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 1.4e-14 82.8 100 50.0
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.9e-14 82.4 97 48.5
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 4.2e-14 81.3 90 50.0
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 4.2e-14 81.3 92 51.1
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 5.4e-14 80.9 92 50.0
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 7.1e-14 80.5 87 49.4
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 9.2e-14 80.1 85 51.8
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.2e-13 79.7 91 47.3
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.2e-13 79.7 83 51.8
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 1.6e-13 79.3 80 55.0
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 2.1e-13 79.0 84 52.4
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 2.1e-13 79.0 81 54.3
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 2.7e-13 78.6 99 45.5
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 3.5e-13 78.2 96 54.2
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 4.6e-13 77.8 88 55.7
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 4.6e-13 77.8 97 53.6
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 6.0e-13 77.4 89 51.7
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 6.6e-12 73.9 99 43.4
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 1.1e-11 73.2 89 50.6
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 5.6e-11 70.9 68 57.4
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 5.6e-11 70.9 84 47.6
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 5.6e-11 70.9 90 47.8
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 1.3e-10 69.7 91 46.2
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 3.6e-10 68.2 87 48.3
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 6.2e-10 67.4 82 52.4
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 1.8e-09 65.9 80 50.0
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 2.4e-09 65.5 85 48.2
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 2.4e-09 65.5 76 52.6
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 3.1e-09 65.1 85 48.2
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 4.0e-09 64.7 86 55.8
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 9.0e-09 63.5 50 56.0
EL10Ac7g17001 Beta vulgaris HOM05D007574 ORTHO05D007552 1.2e-08 63.2 86 48.8
Sp4g20120 Schrenkiella parvula HOM05D009505 ORTHO05D007552 1.2e-08 63.2 93 40.9
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 2.0e-08 62.4 93 41.9
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 2.0e-08 62.4 88 39.8
BcaB01g03759 Brassica carinata HOM05D009505 ORTHO05D007552 2.6e-08 62.0 93 40.9
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 2.6e-08 62.0 87 47.1
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 4.4e-08 61.2 93 40.9
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 4.4e-08 61.2 93 40.9
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 5.8e-08 60.8 90 42.2
BcaB06g29026 Brassica carinata HOM05D009505 ORTHO05D007552 1.3e-07 59.7 94 42.6
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 2.2e-07 58.9 50 60.0
Ah.01g023650 Amaranthus hybridus HOM05D007574 ORTHO05D007552 2.9e-07 58.5 84 45.2
Os05g0456900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 2.9e-07 58.5 86 43.0
A04p28920 Brassica napus HOM05D009505 ORTHO05D007552 4.9e-07 57.8 94 39.4
BraA04t18368Z Brassica rapa HOM05D009505 ORTHO05D007552 4.9e-07 57.8 94 39.4
Sed0004672 Sechium edule HOM05D039850 ORTHO05D034976 4.9e-07 57.8 88 40.9
Ciclev10027461m.g Citrus clementina HOM05D007574 ORTHO05D007552 6.4e-07 57.4 47 51.1
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 8.4e-07 57.0 92 39.1
CARHR131780 Cardamine hirsuta HOM05D009505 ORTHO05D007552 1.1e-06 56.6 91 40.7
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 1.4e-06 56.2 92 35.9
COL.COLO4_18585 Corchorus olitorius HOM05D007574 ORTHO05D007552 1.4e-06 56.2 88 40.9
AL4G34680 Arabidopsis lyrata HOM05D009505 ORTHO05D007552 5.4e-06 54.3 92 37.0
Thhalv10015172m.g Eutrema salsugineum HOM05D009057 ORTHO05D011698 5.4e-06 54.3 59 55.9
Os01g0143900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 7.1e-06 53.9 78 44.9
AL6G11310 Arabidopsis lyrata HOM05D009057 ORTHO05D011698 9.3e-06 53.5 78 47.4
Os01g0847100 Oryza sativa ssp. japonica HOM05D042109 ORTHO05D037005 9.3e-06 53.5 89 40.4
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 9.3e-06 53.5 84 39.3


User provided reference genes

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