Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 9.9e-126 453.4 215 100.0
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 5.3e-119 431.0 215 95.8
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 3.8e-117 424.9 215 94.0
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 8.4e-117 423.7 215 92.6
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 2.7e-115 418.7 215 90.7
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 6.0e-115 417.5 215 92.1
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 1.3e-114 416.4 216 92.1
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 1.3e-114 416.4 215 90.2
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 2.3e-114 415.6 215 90.7
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 8.7e-114 413.7 215 90.7
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.1e-113 413.3 216 91.2
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 1.1e-113 413.3 216 91.2
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 1.5e-113 412.9 219 89.0
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 1.5e-113 412.9 214 89.3
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 1.5e-113 412.9 214 89.3
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 1.5e-113 412.9 213 90.1
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 1.9e-113 412.5 215 89.8
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 7.4e-113 410.6 215 89.8
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 9.6e-113 410.2 215 88.8
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 1.3e-112 409.8 215 89.3
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 2.1e-112 409.1 215 87.9
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 2.1e-112 409.1 215 88.8
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 3.7e-112 408.3 215 87.4
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 3.7e-112 408.3 215 89.8
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 6.3e-112 407.5 216 89.4
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 1.1e-111 406.8 215 89.3
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.4e-111 406.4 219 88.6
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.4e-111 406.4 216 89.8
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 1.8e-111 406.0 216 88.9
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 6.9e-111 404.1 215 88.8
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 1.2e-110 403.3 235 82.6
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 1.2e-110 403.3 215 87.4
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 2.6e-110 402.1 216 89.4
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 4.5e-110 401.4 215 87.4
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 5.9e-110 401.0 216 89.8
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 1.3e-109 399.8 217 87.1
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 1.7e-109 399.4 218 87.2
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 5.0e-109 397.9 215 86.0
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 6.5e-109 397.5 216 88.0
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 6.5e-109 397.5 215 88.4
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 6.5e-109 397.5 215 85.6
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 6.5e-109 397.5 216 88.9
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 6.5e-109 397.5 216 86.6
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 6.5e-109 397.5 216 88.4
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 6.5e-109 397.5 216 88.4
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 1.1e-108 396.7 217 85.7
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 1.4e-108 396.4 216 88.4
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 1.4e-108 396.4 231 82.7
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 1.9e-108 396.0 215 86.0
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 1.9e-108 396.0 217 85.7
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 2.5e-108 395.6 216 88.0
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 9.3e-108 393.7 217 85.7
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 1.2e-107 393.3 215 87.4
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 2.1e-107 392.5 215 86.5
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 1.0e-106 390.2 217 84.8
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 1.0e-106 390.2 210 85.7
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 1.8e-106 389.4 216 86.1
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 2.3e-106 389.0 215 84.2
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 3.9e-106 388.3 225 83.1
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 3.9e-106 388.3 200 88.5
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 8.7e-106 387.1 215 85.1
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 1.1e-105 386.7 215 85.1
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.9e-105 386.0 200 91.0
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 4.3e-105 384.8 217 83.9
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 7.4e-105 384.0 248 76.2
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 6.3e-104 380.9 216 84.7
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 2.4e-103 379.0 220 83.2
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 1.2e-102 376.7 215 85.1
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 1.5e-102 376.3 216 81.5
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 2.6e-102 375.6 216 81.0
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 4.5e-102 374.8 216 81.5
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 4.5e-102 374.8 216 81.0
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 5.9e-102 374.4 216 81.0
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 1.0e-101 373.6 216 80.6
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 1.0e-101 373.6 216 80.6
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 2.9e-101 372.1 186 92.5
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 5.0e-101 371.3 216 80.1
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 8.5e-101 370.5 198 89.4
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.4e-100 369.8 190 91.1
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 1.9e-100 369.4 216 80.1
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 1.9e-100 369.4 241 75.1
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 2.5e-100 369.0 196 88.8
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 5.5e-100 367.9 219 77.2
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 2.1e-99 365.9 188 90.4
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 3.6e-99 365.2 190 90.5
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 6.1e-99 364.4 190 90.0
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.0e-98 363.6 219 76.7
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 1.4e-98 363.2 180 92.8
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 2.3e-98 362.5 216 78.2
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 5.1e-98 361.3 178 92.7
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 6.7e-98 360.9 188 88.3
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 1.5e-97 359.8 217 79.3
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 3.3e-97 358.6 189 89.4
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 9.7e-97 357.1 186 88.7
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 3.7e-96 355.1 211 78.7
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 6.3e-96 354.4 196 83.2
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 1.4e-95 353.2 203 80.8
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 1.2e-94 350.1 214 76.6
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 2.6e-89 332.4 192 79.2
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 4.4e-89 331.6 196 74.0
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 5.7e-89 331.3 207 75.4
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 8.5e-85 317.4 196 69.9
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 2.5e-84 315.8 215 66.5
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 2.2e-80 302.8 196 68.9
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 5.0e-77 291.6 145 93.1
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 9.4e-76 287.3 172 80.8
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 9.4e-76 287.3 172 80.8
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 4.0e-74 282.0 145 87.6
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 8.8e-74 280.8 199 64.8
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 3.7e-72 275.4 133 94.7
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 5.0e-69 265.0 133 92.5
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 2.7e-67 259.2 133 89.5
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 7.7e-62 241.1 130 83.1
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 5.0e-61 238.4 122 88.5
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 8.0e-59 231.1 146 76.0
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.8e-58 229.9 125 86.4
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 5.8e-49 198.4 106 87.7
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 4.7e-43 178.7 89 94.4
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 6.4e-40 168.3 97 82.5
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 1.4e-34 150.6 86 83.7
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 1.7e-32 143.7 82 80.5
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 8.1e-27 124.8 206 34.5
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 4.6e-22 109.0 209 34.0
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 5.8e-17 92.0 63 69.8
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 5.4e-15 85.5 40 95.0
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 5.1e-13 79.0 64 62.5
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 2.2e-08 63.5 45 60.0
MD12G1146300 Malus domestica HOM05D000026 ORTHO05D000094 1.1e-07 61.2 75 52.0


User provided reference genes

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