Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1127500 Malus domestica HOM05D005843 ORTHO05D007781 5.5e-292 1006.9 505 100.0
MD12G1140900 Malus domestica HOM05D005843 ORTHO05D007781 1.2e-262 909.4 508 89.6
Prupe.6G254200 Prunus persica HOM05D005843 ORTHO05D007781 4.0e-234 814.7 511 81.2
RcHm_v2.0_Chr3g0466751 Rosa chinensis HOM05D005843 ORTHO05D007781 5.2e-226 787.7 512 78.3
FAN14G2296 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.5e-225 786.2 511 77.3
FAN05G5617 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.3e-224 783.1 511 77.1
FAN02G2362 Fragaria x ananassa HOM05D005843 ORTHO05D007781 8.6e-213 743.8 542 71.4
FAN09G3893 Fragaria x ananassa HOM05D005843 ORTHO05D007781 3.2e-207 725.3 521 72.7
CiPaw.09G192200 Carya illinoinensis HOM05D005843 ORTHO05D007781 9.3e-207 723.8 511 70.3
Haze_20785 Corylus avellana HOM05D005843 ORTHO05D007781 1.9e-204 716.1 525 70.1
GSVIVG01034179001 Vitis vinifera HOM05D005843 ORTHO05D007781 2.1e-203 712.6 511 70.1
TAR633G1568 Trochodendron aralioides HOM05D005843 ORTHO05D007781 4.0e-202 708.4 512 71.3
CANSAT35G1785 Cannabis sativa HOM05D005843 ORTHO05D007781 5.3e-202 708.0 522 69.5
QL06p005681 Quercus lobata HOM05D005843 ORTHO05D007781 1.2e-201 706.8 510 69.2
Atru.chr8.1969 Acer truncatum HOM05D005843 ORTHO05D007781 1.4e-199 699.9 511 69.9
QL11p021821 Quercus lobata HOM05D005843 ORTHO05D007781 2.1e-190 669.5 554 62.5
Manes.17G047400 Manihot esculenta HOM05D005843 ORTHO05D007781 1.3e-189 666.8 511 65.4
TWI38G1602 Tripterygium wilfordii HOM05D005843 ORTHO05D007781 8.7e-189 664.1 509 65.0
Nn8g39667 Nelumbo nucifera HOM05D005843 ORTHO05D007781 9.6e-188 660.6 512 65.0
CsaV3_4G024980 Cucumis sativus L. HOM05D005843 ORTHO05D007781 1.6e-187 659.8 510 65.5
Thecc.05G040300 Theobroma cacao HOM05D005843 ORTHO05D007781 2.8e-187 659.1 510 66.5
Hma1.2p1_1513F.1_g288040 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 3.7e-187 658.7 511 65.4
Gohir.A09G156300 Gossypium hirsutum HOM05D005843 ORTHO05D007781 4.8e-187 658.3 511 64.8
Duzib128G1977 Durio zibethinus HOM05D005843 ORTHO05D007781 3.1e-186 655.6 529 64.7
Lalb_Chr19g0125371 Lupinus albus HOM05D005843 ORTHO05D007781 1.5e-185 653.3 510 64.9
Cc06_g02690 Coffea canephora HOM05D005843 ORTHO05D007781 2.0e-185 652.9 511 64.0
Gorai.006G173000 Gossypium raimondii HOM05D005843 ORTHO05D007781 3.4e-185 652.1 511 64.4
Eucgr.K03141 Eucalyptus grandis HOM05D005843 ORTHO05D007781 5.8e-185 651.4 511 63.0
Gohir.D09G151700 Gossypium hirsutum HOM05D005843 ORTHO05D007781 1.0e-184 650.6 511 64.2
MELO3C003129.2 Cucumis melo HOM05D005843 ORTHO05D007781 1.3e-184 650.2 511 64.8
Ca_26026_v3 Cicer arietinum L. HOM05D005843 ORTHO05D007781 6.5e-184 647.9 510 63.9
Medtr7g060680 Medicago truncatula HOM05D005843 ORTHO05D007781 8.4e-184 647.5 511 63.2
Aqoxy6G01388 Aquilegia oxysepala HOM05D005843 ORTHO05D007781 1.4e-183 646.7 512 63.3
TPR.G23290 Trifolium pratense HOM05D005843 ORTHO05D007781 7.1e-183 644.4 509 63.1
Cpa.g.sc332.7 Carica papaya HOM05D005843 ORTHO05D007781 2.1e-182 642.9 509 65.2
Glyma.07G131100 Glycine max HOM05D005843 ORTHO05D007781 1.3e-181 640.2 510 64.7
Lj3C968G10 Lonicera japonica HOM05D005843 ORTHO05D007781 3.0e-181 639.0 550 62.0
Phvul.008G100900 Phaseolus vulgaris HOM05D005843 ORTHO05D007781 6.7e-181 637.9 510 64.5
PSO339G2649 Papaver somniferum HOM05D005843 ORTHO05D007781 9.6e-180 634.0 512 62.1
PSO151G0180 Papaver somniferum HOM05D005843 ORTHO05D007781 1.6e-179 633.3 512 62.5
VMungo1383G2898 Vigna mungo HOM05D005843 ORTHO05D007781 3.7e-179 632.1 510 63.9
ClCG04G008190 Citrullus lanatus HOM05D005843 ORTHO05D007781 4.8e-179 631.7 510 62.9
Rhsim05G0192300 Rhododendron simsii HOM05D005843 ORTHO05D007781 4.8e-179 631.7 512 65.0
Hund24578 Selenicereus undatus HOM05D005843 ORTHO05D007781 1.1e-178 630.6 511 62.0
Psat5g101400 Pisum sativum HOM05D005843 ORTHO05D007781 1.4e-178 630.2 510 61.2
PGR004G0455 Punica granatum HOM05D005843 ORTHO05D007781 2.6e-177 625.9 511 62.6
Oeu024347.1 Olea europaea HOM05D005843 ORTHO05D007781 2.2e-176 622.9 511 61.4
Sc20g0004950 Simmondsia chinensis HOM05D005843 ORTHO05D007781 2.9e-176 622.5 511 60.7
arahy.Tifrunner.gnm1.ann1.JAB43P Arachis hypogaea HOM05D005843 ORTHO05D007781 1.9e-175 619.8 512 60.9
Sopen09g005490 Solanum pennellii HOM05D005843 ORTHO05D007781 7.9e-174 614.4 512 60.7
PGSC0003DMG400008911 Solanum tuberosum HOM05D005843 ORTHO05D007781 7.9e-174 614.4 512 61.1
DCAR_014847 Daucus carota HOM05D005843 ORTHO05D007781 3.0e-173 612.5 513 60.4
Nitab4.5_0001190g0070 Nicotiana tabacum HOM05D005843 ORTHO05D007781 3.9e-173 612.1 515 60.6
CAN.G326.14 Capsicum annuum HOM05D005843 ORTHO05D007781 1.5e-172 610.1 515 60.4
Thhalv10013300m.g Eutrema salsugineum HOM05D005843 ORTHO05D007781 1.5e-172 610.1 509 60.9
Solyc09g010770.3 Solanum lycopersicum HOM05D005843 ORTHO05D007781 1.3e-171 607.1 507 60.4
Sed0019468 Sechium edule HOM05D005843 ORTHO05D007781 1.1e-170 604.0 483 62.9
THA.LOC104809903 Tarenaya hassleriana HOM05D005843 ORTHO05D007781 3.1e-170 602.4 509 61.5
ECA238G1173 Erigeron canadensis HOM05D005843 ORTHO05D007781 4.1e-170 602.1 509 59.3
Migut.J00332 Erythranthe guttata HOM05D005843 ORTHO05D007781 9.0e-170 600.9 511 61.3
A10p33250 Brassica napus HOM05D005843 ORTHO05D007781 1.5e-169 600.1 512 59.6
BolC9t60149H Brassica oleracea HOM05D005843 ORTHO05D007781 1.7e-168 596.7 511 58.5
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 3.2e-167 592.4 509 58.3
SalBow3G1829 Salvia bowleyana HOM05D005843 ORTHO05D007781 7.2e-167 591.3 517 58.8
Peaxi162Scf00165g01322 Petunia axillaris HOM05D005843 ORTHO05D007781 1.2e-166 590.5 548 56.9
CARHR211000 Cardamine hirsuta HOM05D005843 ORTHO05D007781 3.6e-166 589.0 511 60.3
Lsat_1_v5_gn_2_17401 Lactuca sativa HOM05D005843 ORTHO05D007781 7.9e-166 587.8 502 58.6
Carub.0006s0120 Capsella rubella HOM05D005843 ORTHO05D007781 1.8e-165 586.6 512 58.8
AT5G02410 Arabidopsis thaliana HOM05D005843 ORTHO05D007781 5.1e-165 585.1 510 57.6
Sp6g40070 Schrenkiella parvula HOM05D005843 ORTHO05D007781 6.7e-165 584.7 508 58.5
EL10Ac3g07255 Beta vulgaris HOM05D005843 ORTHO05D007781 1.1e-164 583.9 512 58.8
BcaNung05922 Brassica carinata HOM05D005843 ORTHO05D007781 6.3e-163 578.2 515 58.3
Glyma.18G179500 Glycine max HOM05D005843 ORTHO05D007781 1.8e-162 576.6 510 60.4
A03p00670 Brassica napus HOM05D005843 ORTHO05D007781 9.1e-162 574.3 516 58.3
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 9.1e-162 574.3 513 58.3
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 9.1e-162 574.3 513 58.3
BcaC06g31988 Brassica carinata HOM05D005843 ORTHO05D007781 1.2e-161 573.9 511 57.7
SGA_v2.0_scaffold75G24948 Striga asiatica HOM05D005843 ORTHO05D007781 2.0e-161 573.2 512 59.0
AL6G11640 Arabidopsis lyrata HOM05D005843 ORTHO05D007781 1.7e-160 570.1 494 58.5
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 5.0e-160 568.5 513 57.7
Hma1.2p1_1513F.1_g288030 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 1.1e-159 567.4 460 63.7
CSS0035027 Camellia sinensis var. sinensis HOM05D005843 ORTHO05D007781 2.5e-159 566.2 446 67.9
Aa31LG1G22390 Aethionema arabicum HOM05D005843 ORTHO05D007781 4.2e-159 565.5 580 52.6
HanXRQChr16g0515781 Helianthus annuus HOM05D005843 ORTHO05D007781 7.2e-159 564.7 491 59.5
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 1.2e-158 563.9 525 56.6
Sabra06G0064400 Salix brachista HOM05D005843 ORTHO05D007781 1.1e-156 557.4 531 58.0
Dinv35609 Davidia involucrata HOM05D005843 ORTHO05D007781 3.3e-156 555.8 426 69.2
Actinidia26464 Actinidia chinensis HOM05D005843 ORTHO05D000250 8.2e-155 551.2 436 66.5
FvH4_6g13910 Fragaria vesca HOM05D005843 ORTHO05D007781 1.1e-154 550.8 376 75.3
C09p74160 Brassica napus HOM05D005843 ORTHO05D007781 1.2e-153 547.4 480 58.1
AUR62030297 Chenopodium quinoa HOM05D005843 ORTHO05D007781 2.1e-150 536.6 592 52.4
HPP92_000805 Vanilla planifolia HOM05D005843 ORTHO05D007781 2.1e-150 536.6 512 53.7
Lj3g0024665 Lotus japonicus HOM05D005843 ORTHO05D007781 1.8e-149 533.5 452 61.3
SHI00339 Sapria himalayana HOM05D005843 ORTHO05D007781 1.0e-144 517.7 529 52.6
AUR62015928 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.8e-138 496.9 505 54.1
unitig_26.g9195 Utricularia gibba HOM05D005843 ORTHO05D007781 7.7e-129 464.9 458 55.7
Os04g0503700 Oryza sativa ssp. japonica HOM05D005843 ORTHO05D007781 4.7e-126 455.7 468 50.6
arahy.Tifrunner.gnm1.ann1.HAEF8J Arachis hypogaea HOM05D005843 ORTHO05D007781 2.4e-122 443.4 387 59.4
Pp3c4_12410 Physcomitrium patens HOM05D005843 ORTHO05D007781 3.2e-122 443.0 525 47.0
SMO137G0039 Selaginella moellendorffii HOM05D005843 ORTHO05D007781 8.3e-115 418.3 523 45.9
Dinv37176 Davidia involucrata HOM05D005843 ORTHO05D007781 1.6e-113 414.1 339 63.4
Potri.006G084800 Populus trichocarpa HOM05D005843 ORTHO05D007781 3.1e-101 373.2 325 60.0
AUR62018365 Chenopodium quinoa HOM05D005843 ORTHO05D007781 5.2e-101 372.5 370 57.6
Mapoly0047s0019 Marchantia polymorpha HOM05D005843 ORTHO05D007781 1.4e-98 364.4 531 42.0
ATR0585G056 Amborella trichopoda HOM05D005843 ORTHO05D007781 1.6e-94 350.9 394 50.0
vmacro20152 Vaccinium macrocarpon HOM05D005843 ORTHO05D007781 4.0e-93 346.3 422 48.1
CDE09G0345 Ceratophyllum demersum HOM05D005843 ORTHO05D007781 9.9e-92 341.7 455 44.8
Zm00001eb078080 Zea mays HOM05D005843 ORTHO05D007781 9.3e-82 308.5 342 48.8
BcaC06g31987 Brassica carinata HOM05D005843 ORTHO05D007781 3.8e-75 286.6 317 49.8
Nitab4.5_0002018g0090 Nicotiana tabacum HOM05D005843 ORTHO05D007781 4.9e-75 286.2 240 60.8
A03p00710 Brassica napus HOM05D005843 ORTHO05D007781 1.1e-74 285.0 196 71.4
AagrBONN_evm.TU.Sc2ySwM_117.1914 Anthoceros agrestis HOM05D005843 ORTHO05D007781 2.4e-74 283.9 456 37.5
SGA_v2.0_scaffold75G24944 Striga asiatica HOM05D005843 ORTHO05D007781 2.1e-65 254.2 435 40.7
Cre01.g041300 Chlamydomonas reinhardtii HOM05D005843 ORTHO05D007781 2.0e-60 237.7 529 32.1
TAR636G2087 Trochodendron aralioides HOM05D005843 ORTHO05D007781 4.5e-60 236.5 184 67.4
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 7.2e-58 229.2 388 40.5
CBR_g29861 Chara braunii HOM05D005843 ORTHO05D000002 1.2e-52 211.8 355 37.2
VMungo1309G2290 Vigna mungo HOM05D005843 ORTHO05D007781 7.2e-50 202.6 135 71.9
TAR636G1000 Trochodendron aralioides HOM05D005843 ORTHO05D007781 4.1e-45 186.8 132 72.0
TAR636G1324 Trochodendron aralioides HOM05D005843 ORTHO05D007781 4.1e-45 186.8 132 72.0
DCAR_015734 Daucus carota HOM05D005843 ORTHO05D007781 2.0e-39 167.9 137 59.9
Haze_26583 Corylus avellana HOM05D005843 ORTHO05D007781 3.5e-28 130.6 503 26.6
AUR62040681 Chenopodium quinoa HOM05D005843 ORTHO05D007781 2.2e-27 127.9 191 43.5
DCAR_015735 Daucus carota HOM05D005843 ORTHO05D007781 1.7e-22 111.7 60 85.0
SEGI_06123 Sequoiadendron giganteum HOM05D005843 ORTHO05D007781 1.6e-20 105.1 116 50.9
TAR636G3605 Trochodendron aralioides HOM05D005843 ORTHO05D007781 3.5e-20 104.0 57 82.5
VMungo1309G1664 Vigna mungo HOM05D005843 ORTHO05D007781 5.9e-20 103.2 223 36.8
Hma1.2p1_1611F.1_g293520 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 2.3e-19 101.3 52 88.5
SEGI_08652 Sequoiadendron giganteum HOM05D005843 ORTHO05D000001 2.1e-17 94.7 63 63.5
C03p92170 Brassica napus HOM05D005843 ORTHO05D040940 6.8e-16 89.7 62 67.7
BolC3t21533H Brassica oleracea HOM05D005843 ORTHO05D040940 6.8e-16 89.7 62 67.7
TAR636G0893 Trochodendron aralioides HOM05D005843 ORTHO05D007781 6.3e-14 83.2 65 66.2
BraA10t45356Z Brassica rapa HOM05D005843 ORTHO05D007781 7.0e-13 79.7 65 53.8
SEGI_16582 Sequoiadendron giganteum HOM05D005843 ORTHO05D014789 3.6e-09 67.4 74 43.2


User provided reference genes

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