Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1127100 Malus domestica HOM05D003527 ORTHO05D004099 3.5e-53 211.5 114 100.0
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 8.4e-15 84.0 59 79.7
RcHm_v2.0_Chr3g0466801 Rosa chinensis HOM05D003527 ORTHO05D004099 4.6e-13 78.2 59 69.5
Dinv35615 Davidia involucrata HOM05D003527 ORTHO05D004099 1.3e-12 76.6 64 65.6
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 2.3e-12 75.9 60 73.3
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 3.0e-12 75.5 59 74.6
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 3.9e-12 75.1 59 69.5
Prupe.6G253600 Prunus persica HOM05D003527 ORTHO05D004099 3.9e-12 75.1 41 87.8
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 5.1e-12 74.7 59 69.5
CSS0027996 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 6.7e-12 74.3 59 67.8
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 6.7e-12 74.3 59 69.5
FvH4_6g13980 Fragaria vesca HOM05D003527 ORTHO05D004099 6.7e-12 74.3 59 71.2
FAN05G0377 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.7e-12 74.3 59 71.2
FAN09G0639 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.7e-12 74.3 59 71.2
FAN09G3248 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.7e-12 74.3 59 71.2
FAN14G4675 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.7e-12 74.3 59 71.2
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 8.7e-12 73.9 59 69.5
Dinv37181 Davidia involucrata HOM05D003527 ORTHO05D004099 1.1e-11 73.6 59 67.8
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 1.5e-11 73.2 59 67.8
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.9e-11 72.8 59 69.5
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 1.9e-11 72.8 59 69.5
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 2.5e-11 72.4 64 60.9
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 3.3e-11 72.0 59 66.1
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 3.3e-11 72.0 59 66.1
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 4.3e-11 71.6 60 70.0
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 5.6e-11 71.2 61 67.2
Duzib170G0558 Durio zibethinus HOM05D003527 ORTHO05D004099 5.6e-11 71.2 60 66.7
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 5.6e-11 71.2 59 69.5
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 5.6e-11 71.2 59 66.1
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 7.4e-11 70.9 59 69.5
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 7.4e-11 70.9 59 67.8
Actinidia26460 Actinidia chinensis HOM05D003527 ORTHO05D004099 9.6e-11 70.5 76 53.9
Haze_20770 Corylus avellana HOM05D003527 ORTHO05D004099 9.6e-11 70.5 57 71.9
Hma1.2p1_1513F.1_g288070 Hydrangea macrophylla HOM05D003527 ORTHO05D004099 9.6e-11 70.5 56 69.6
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 1.3e-10 70.1 59 66.1
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 1.3e-10 70.1 59 67.8
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 1.3e-10 70.1 59 64.4
FAN02G4097 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.3e-10 70.1 54 70.4
Atru.chr8.1961 Acer truncatum HOM05D003527 ORTHO05D004099 1.6e-10 69.7 56 69.6
Actinidia34400 Actinidia chinensis HOM05D003527 ORTHO05D004099 1.6e-10 69.7 63 63.5
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 1.6e-10 69.7 56 69.6
CiPaw.10G145200 Carya illinoinensis HOM05D003527 ORTHO05D004099 2.1e-10 69.3 60 70.0
MSTRG.19089 Avicennia marina HOM05D003527 ORTHO05D004099 2.8e-10 68.9 58 65.5
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 2.8e-10 68.9 59 67.8
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.8e-10 68.9 60 66.7
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.8e-10 68.9 60 66.7
arahy.Tifrunner.gnm1.ann1.95G3UD Arachis hypogaea HOM05D003527 ORTHO05D004099 4.8e-10 68.2 59 64.4
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 4.8e-10 68.2 55 67.3
Lalb_Chr13g0291191 Lupinus albus HOM05D003527 ORTHO05D004099 4.8e-10 68.2 60 63.3
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 4.8e-10 68.2 56 67.9
Manes.09G089700 Manihot esculenta HOM05D003527 ORTHO05D004099 6.2e-10 67.8 64 59.4
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 6.2e-10 67.8 59 62.7
arahy.Tifrunner.gnm1.ann1.QWF1SC Arachis hypogaea HOM05D003527 ORTHO05D004099 8.1e-10 67.4 59 62.7
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 8.1e-10 67.4 80 51.2
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 8.1e-10 67.4 80 51.2
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 8.1e-10 67.4 80 51.2
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 1.1e-09 67.0 59 62.7
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 1.4e-09 66.6 59 67.8
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 1.4e-09 66.6 60 65.0
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 1.8e-09 66.2 59 64.4
TPR.G23255 Trifolium pratense HOM05D003527 ORTHO05D004099 1.8e-09 66.2 60 61.7
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.8e-09 66.2 55 65.5
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 1.8e-09 66.2 59 62.7
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 2.4e-09 65.9 61 67.2
Manes.08G081800 Manihot esculenta HOM05D003527 ORTHO05D004099 2.4e-09 65.9 64 59.4
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 2.4e-09 65.9 56 62.5
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.1e-09 65.5 59 62.7
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.1e-09 65.5 59 62.7
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 3.1e-09 65.5 59 62.7
Lalb_Chr07g0193911 Lupinus albus HOM05D003527 ORTHO05D004099 3.1e-09 65.5 61 62.3
Nn5g26928 Nelumbo nucifera HOM05D003527 ORTHO05D004099 3.1e-09 65.5 64 60.9
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 3.1e-09 65.5 59 61.0
Atru.chr3.3891 Acer truncatum HOM05D003527 ORTHO05D004099 4.0e-09 65.1 56 64.3
Ca_26083_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 4.0e-09 65.1 60 65.0
Glyma.03G082900 Glycine max HOM05D003527 ORTHO05D004099 4.0e-09 65.1 59 64.4
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 4.0e-09 65.1 59 61.0
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 4.0e-09 65.1 63 60.3
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 6.9e-09 64.3 58 63.8
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 9.0e-09 63.9 60 63.3
MSTRG.5670 Avicennia marina HOM05D003527 ORTHO05D004099 9.0e-09 63.9 59 62.7
MELO3C003124.2 Cucumis melo HOM05D003527 ORTHO05D004099 9.0e-09 63.9 74 50.0
CsaV3_4G024920 Cucumis sativus L. HOM05D003527 ORTHO05D004099 9.0e-09 63.9 74 50.0
Glyma.13G335402 Glycine max HOM05D003527 ORTHO05D004099 9.0e-09 63.9 60 60.0
Potri.009G030100 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.2e-08 63.5 59 61.0
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 1.5e-08 63.2 61 57.4
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 1.5e-08 63.2 58 58.6
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 1.5e-08 63.2 57 66.7
FAN11G1093 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.5e-08 63.2 65 61.5
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 2.0e-08 62.8 60 61.7
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 2.0e-08 62.8 59 64.4
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.0e-08 62.8 61 63.9
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.0e-08 62.8 61 63.9
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.0e-08 62.8 56 62.5
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 2.0e-08 62.8 59 61.0
TAR623G1457 Trochodendron aralioides HOM05D003527 ORTHO05D004099 2.0e-08 62.8 74 51.4
ClCG04G008250 Citrullus lanatus HOM05D003527 ORTHO05D004099 2.6e-08 62.4 74 48.6
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 2.6e-08 62.4 56 64.3
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 2.6e-08 62.4 59 64.4
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 3.4e-08 62.0 58 58.6
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 3.4e-08 62.0 60 60.0
ClCG10G021090 Citrullus lanatus HOM05D003527 ORTHO05D004099 4.5e-08 61.6 61 60.7
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 4.5e-08 61.6 56 58.9
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 4.5e-08 61.6 82 48.8
Phvul.010G013400 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 4.5e-08 61.6 59 62.7
RcHm_v2.0_Chr2g0141581 Rosa chinensis HOM05D003527 ORTHO05D004099 4.5e-08 61.6 58 62.1
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.8e-08 61.2 61 62.3
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 7.6e-08 60.8 58 56.9
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 7.6e-08 60.8 58 56.9
Glyma.15G039000 Glycine max HOM05D003527 ORTHO05D004099 7.6e-08 60.8 60 58.3
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 7.6e-08 60.8 56 60.7
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 9.9e-08 60.5 56 60.7
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 9.9e-08 60.5 82 48.8
Phvul.L004843 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 9.9e-08 60.5 66 57.6
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 9.9e-08 60.5 57 63.2
CARHR210970 Cardamine hirsuta HOM05D003527 ORTHO05D004099 1.3e-07 60.1 64 51.6
Thhalv10014850m.g Eutrema salsugineum HOM05D003527 ORTHO05D004099 1.3e-07 60.1 65 50.8
Medtr7g059410 Medicago truncatula HOM05D003527 ORTHO05D004099 1.3e-07 60.1 56 62.5
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 1.7e-07 59.7 61 59.0
Eucgr.K03143 Eucalyptus grandis HOM05D003527 ORTHO05D004099 1.7e-07 59.7 59 59.3
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 1.7e-07 59.7 60 61.7
Lj3g0018686 Lotus japonicus HOM05D003527 ORTHO05D004099 2.2e-07 59.3 56 62.5
AL6G11680 Arabidopsis lyrata HOM05D003527 ORTHO05D004099 2.9e-07 58.9 64 50.0
Glyma.08G358400 Glycine max HOM05D003527 ORTHO05D004099 2.9e-07 58.9 59 59.3
Sopen09g005410 Solanum pennellii HOM05D003527 ORTHO05D004099 2.9e-07 58.9 68 54.4
C02p00460 Brassica napus HOM05D003527 ORTHO05D004099 3.8e-07 58.5 63 52.4
LjContig00564g0015687 Lotus japonicus HOM05D003527 ORTHO05D004099 3.8e-07 58.5 56 60.7
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 3.8e-07 58.5 59 61.0
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 4.9e-07 58.2 55 60.0
AT5G02440 Arabidopsis thaliana HOM05D003527 ORTHO05D004099 6.4e-07 57.8 67 52.2
Carub.0006s0124 Capsella rubella HOM05D003527 ORTHO05D004099 6.4e-07 57.8 71 47.9
Peaxi162Scf00832g00018 Petunia axillaris HOM05D003527 ORTHO05D004099 6.4e-07 57.8 36 72.2
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 6.4e-07 57.8 62 56.5
Nitab4.5_0007604g0010 Nicotiana tabacum HOM05D003527 ORTHO05D004099 8.4e-07 57.4 36 69.4
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 8.4e-07 57.4 56 55.4
PSO339G2088 Papaver somniferum HOM05D003527 ORTHO05D004099 1.1e-06 57.0 60 55.0
Peaxi162Scf00165g01520 Petunia axillaris HOM05D003527 ORTHO05D004099 1.4e-06 56.6 64 56.2
SalBow3G4662 Salvia bowleyana HOM05D003527 ORTHO05D004099 1.4e-06 56.6 57 61.4
vmacro20143 Vaccinium macrocarpon HOM05D003527 ORTHO05D004099 1.4e-06 56.6 61 60.7
Sed0011659 Sechium edule HOM05D003527 ORTHO05D004099 1.9e-06 56.2 60 58.3
PSO151G0026 Papaver somniferum HOM05D003527 ORTHO05D004099 2.4e-06 55.8 60 53.3
PGR102G2755 Punica granatum HOM05D003527 ORTHO05D004099 3.2e-06 55.5 59 55.9
CDE02G3270 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 4.2e-06 55.1 56 58.9
Medtr2g096780 Medicago truncatula HOM05D003527 ORTHO05D004099 4.2e-06 55.1 63 50.8
CsaV3_3G034940 Cucumis sativus L. HOM05D003527 ORTHO05D004099 5.5e-06 54.7 60 60.0
TPR.G5587 Trifolium pratense HOM05D003527 ORTHO05D004099 5.5e-06 54.7 60 56.7
arahy.Tifrunner.gnm1.ann1.6Q00VM Arachis hypogaea HOM05D003527 ORTHO05D004099 7.1e-06 54.3 61 49.2
Lalb_Chr03g0035091 Lupinus albus HOM05D003527 ORTHO05D004099 7.1e-06 54.3 60 60.0
Lalb_Chr03g0042111 Lupinus albus HOM05D003527 ORTHO05D004099 9.3e-06 53.9 61 59.0


User provided reference genes

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