Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 8.7e-146 520.8 371 100.0
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 1.6e-110 403.7 366 78.1
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 1.9e-71 273.9 367 56.7
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 6.2e-67 258.8 370 49.7
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 8.4e-64 248.4 222 62.2
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.1e-63 248.1 211 64.5
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 2.4e-63 246.9 211 64.9
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 9.3e-63 245.0 222 62.2
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 1.1e-34 151.8 236 45.3
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 1.0e-32 145.2 216 44.4
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 1.3e-32 144.8 207 44.9
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 1.1e-31 141.7 219 42.9
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 6.1e-30 136.0 229 43.7
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 7.9e-30 135.6 217 42.4
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 1.3e-29 134.8 221 43.0
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 5.1e-29 132.9 222 42.8
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 6.7e-29 132.5 218 41.7
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 8.7e-29 132.1 228 42.1
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 1.1e-28 131.7 223 40.8
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 1.9e-28 131.0 232 42.2
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 2.5e-28 130.6 217 44.7
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 4.3e-28 129.8 228 46.9
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 4.3e-28 129.8 238 43.7
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 1.6e-27 127.9 223 38.6
Actinidia26442 Actinidia chinensis HOM05D004206 ORTHO05D003325 3.7e-27 126.7 233 42.5
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 3.7e-27 126.7 224 41.5
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 8.2e-27 125.6 226 41.2
QL05p010542 Quercus lobata HOM05D004206 ORTHO05D003325 1.1e-26 125.2 201 45.8
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 1.4e-26 124.8 225 40.4
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 1.4e-26 124.8 221 43.9
QL07p047329 Quercus lobata HOM05D004206 ORTHO05D003325 1.4e-26 124.8 201 45.8
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.8e-26 124.4 218 42.2
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 2.4e-26 124.0 250 38.8
CSS0004803 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 3.1e-26 123.6 242 39.3
CiPaw.10G143300 Carya illinoinensis HOM05D004206 ORTHO05D003325 4.1e-26 123.2 225 41.8
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 6.9e-26 122.5 226 39.4
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 6.9e-26 122.5 250 38.4
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 2.0e-25 120.9 146 52.7
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 2.6e-25 120.6 224 40.2
Lj3C971T5 Lonicera japonica HOM05D004206 ORTHO05D003325 3.4e-25 120.2 237 39.2
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 4.5e-25 119.8 222 40.1
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 4.5e-25 119.8 223 43.0
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 5.9e-25 119.4 239 39.3
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 5.9e-25 119.4 222 40.1
ClCG10G020930 Citrullus lanatus HOM05D004206 ORTHO05D003325 7.7e-25 119.0 216 40.3
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.0e-24 118.6 218 41.3
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 2.2e-24 117.5 207 44.0
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 3.8e-24 116.7 204 42.6
MELO3C009278.2 Cucumis melo HOM05D004206 ORTHO05D003325 5.0e-24 116.3 216 38.4
CsaV3_3G035080 Cucumis sativus L. HOM05D004206 ORTHO05D003325 6.5e-24 115.9 216 39.4
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 8.5e-24 115.5 225 39.1
Oeu036176.1 Olea europaea HOM05D004206 ORTHO05D003325 8.5e-24 115.5 244 37.3
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 1.4e-23 114.8 229 39.7
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 1.4e-23 114.8 229 41.5
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 1.4e-23 114.8 240 37.9
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 5.5e-23 112.8 223 40.8
SGA_v2.0_scaffold126G33821 Striga asiatica HOM05D004206 ORTHO05D003325 7.2e-23 112.5 218 44.5
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 9.4e-23 112.1 215 39.1
Eucgr.K03159 Eucalyptus grandis HOM05D004206 ORTHO05D003325 9.4e-23 112.1 237 35.0
Gorai.012G101500 Gossypium raimondii HOM05D004206 ORTHO05D003325 9.4e-23 112.1 220 40.9
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.6e-22 111.3 234 36.3
Gohir.D04G119400 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.6e-22 111.3 220 40.9
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 1.6e-22 111.3 219 41.1
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 2.7e-22 110.5 146 49.3
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 2.7e-22 110.5 222 38.7
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 7.9e-22 109.0 228 39.5
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 7.9e-22 109.0 220 37.7
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 1.0e-21 108.6 242 38.8
vmacro20128 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 1.0e-21 108.6 225 40.0
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 3.9e-21 106.7 187 42.2
PGSC0003DMG401019213 Solanum tuberosum HOM05D004206 ORTHO05D003325 8.8e-21 105.5 239 37.7
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 8.8e-21 105.5 218 40.8
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 2.0e-20 104.4 224 38.4
Nitab4.5_0000527g0130 Nicotiana tabacum HOM05D004206 ORTHO05D003325 3.3e-20 103.6 224 38.4
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 4.4e-20 103.2 205 42.4
Aqoxy2G02033 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 5.7e-20 102.8 209 38.3
Sopen10g035740 Solanum pennellii HOM05D004206 ORTHO05D003325 5.7e-20 102.8 237 35.4
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 9.7e-20 102.1 236 37.3
Solyc10g086360.2 Solanum lycopersicum HOM05D004206 ORTHO05D003325 9.7e-20 102.1 237 35.4
AUR62041741 Chenopodium quinoa HOM05D004206 ORTHO05D003325 1.7e-19 101.3 193 42.0
Migut.J00362 Erythranthe guttata HOM05D004206 ORTHO05D003325 2.2e-19 100.9 226 37.2
Sed0018769 Sechium edule HOM05D004206 ORTHO05D003325 6.3e-19 99.4 155 44.5
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 6.3e-19 99.4 212 37.3
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 1.8e-18 97.8 192 38.0
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 2.4e-18 97.4 142 48.6
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 3.1e-18 97.1 238 36.1
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 3.1e-18 97.1 245 34.7
MSTRG.5685 Avicennia marina HOM05D004206 ORTHO05D003325 9.1e-18 95.5 144 47.9
MBI05_g10357_MAGBIO Magnolia biondii HOM05D004206 ORTHO05D003325 1.5e-17 94.7 202 38.1
TPR.G21456 Trifolium pratense HOM05D004206 ORTHO05D003325 1.5e-17 94.7 164 42.7
CSS0042901 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 2.0e-17 94.4 204 37.7
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 3.4e-17 93.6 237 33.8
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 3.4e-17 93.6 148 43.9
Solyc09g010410.3 Solanum lycopersicum HOM05D004206 ORTHO05D003325 3.4e-17 93.6 241 34.4
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 4.5e-17 93.2 209 34.9
Aqoxy4G02996 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 5.9e-17 92.8 182 38.5
PSO339G0439 Papaver somniferum HOM05D004206 ORTHO05D003325 5.9e-17 92.8 227 39.6
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 5.9e-17 92.8 201 37.8
HanXRQChr07g0196151 Helianthus annuus HOM05D004206 ORTHO05D003325 7.7e-17 92.4 201 42.8
SalBow4G2008 Salvia bowleyana HOM05D004206 ORTHO05D003325 1.0e-16 92.0 150 43.3
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 1.0e-16 92.0 136 49.3
Manes.09G086700 Manihot esculenta HOM05D004206 ORTHO05D003325 1.3e-16 91.7 218 39.4
Lj1g0028211 Lotus japonicus HOM05D004206 ORTHO05D003325 2.2e-16 90.9 230 37.4
MSTRG.26756 Avicennia marina HOM05D004206 ORTHO05D003325 5.0e-16 89.7 134 43.3
Sabra06G0062000 Salix brachista HOM05D004206 ORTHO05D003325 1.4e-15 88.2 140 45.0
Lsat_1_v5_gn_1_55680 Lactuca sativa HOM05D004206 ORTHO05D003325 1.9e-15 87.8 171 42.1
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.5e-15 87.4 148 43.2
Gohir.D11G345000 Gossypium hirsutum HOM05D004206 ORTHO05D003325 3.2e-15 87.0 148 43.2
vmacro08670 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 7.2e-15 85.9 145 45.5
HanXRQChr14g0453751 Helianthus annuus HOM05D004206 ORTHO05D003325 1.6e-14 84.7 156 43.6
PSO206G0053 Papaver somniferum HOM05D004206 ORTHO05D003325 1.6e-14 84.7 225 37.3
Psat3g048840 Pisum sativum HOM05D004206 ORTHO05D003325 1.6e-14 84.7 132 43.9
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 2.1e-14 84.3 123 47.2
Lj2A99T58 Lonicera japonica HOM05D004206 ORTHO05D003325 1.0e-13 82.0 245 32.7
ATR0559G289 Amborella trichopoda HOM05D004206 ORTHO05D003325 1.8e-13 81.3 240 33.3
ECA233G2126 Erigeron canadensis HOM05D004206 ORTHO05D003325 3.0e-13 80.5 205 34.1
Os05g0113500 Oryza sativa ssp. japonica HOM05D004206 ORTHO05D003325 3.9e-13 80.1 244 32.4
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 6.7e-13 79.3 171 37.4
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 6.7e-13 79.3 167 36.5
Hund07780 Selenicereus undatus HOM05D004206 ORTHO05D003325 1.1e-12 78.6 154 40.3
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 1.1e-12 78.6 202 34.7
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 1.5e-12 78.2 152 42.1
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 3.3e-12 77.0 121 43.8
Lsat_1_v5_gn_2_110540 Lactuca sativa HOM05D004206 ORTHO05D003325 5.7e-12 76.3 135 40.0
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 7.4e-12 75.9 186 37.1
HPP92_000797 Vanilla planifolia HOM05D004206 ORTHO05D003325 9.7e-12 75.5 145 39.3
Actinidia07050 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.1e-10 72.0 86 53.5
Medtr1g068825 Medicago truncatula HOM05D004206 ORTHO05D003325 1.1e-10 72.0 157 39.5
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 1.8e-10 71.2 87 57.5
ECA238G1623 Erigeron canadensis HOM05D000150 ORTHO05D000108 1.8e-10 71.2 204 36.3
Zm00001eb266560 Zea mays HOM05D019293 ORTHO05D003325 1.8e-10 71.2 201 34.3
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 3.1e-10 70.5 120 47.5
Nn2g12918 Nelumbo nucifera HOM05D004206 ORTHO05D003325 3.1e-10 70.5 127 41.7
AL4G33980 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 4.1e-10 70.1 108 44.4
BcaB01g03773 Brassica carinata HOM05D008508 ORTHO05D003325 5.3e-10 69.7 85 57.6
AT2G37480 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 9.1e-10 68.9 107 43.9
ECA248G2846 Erigeron canadensis HOM05D004206 ORTHO05D003325 2.0e-09 67.8 107 38.3
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 2.6e-09 67.4 72 58.3
CDE02G3836 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 3.5e-09 67.0 141 39.0
Psat2g133080 Pisum sativum HOM05D000159 ORTHO05D000148 5.9e-09 66.2 132 39.4
SGA_v2.0_scaffold75G24932 Striga asiatica HOM05D004206 ORTHO05D003325 7.7e-09 65.9 158 39.2
AL4G33940 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 1.7e-08 64.7 63 58.7
CSS0043919 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 1.7e-08 64.7 66 51.5
BcaC01g05613 Brassica carinata HOM05D008508 ORTHO05D003325 2.9e-08 63.9 119 42.0
C03p24300 Brassica napus HOM05D008508 ORTHO05D003325 2.9e-08 63.9 119 42.0
BolC3t14826H Brassica oleracea HOM05D008508 ORTHO05D003325 2.9e-08 63.9 119 42.0
Hma1.2p1_1535F.1_g289470 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 3.8e-08 63.5 133 41.4
SEGI_05191 Sequoiadendron giganteum HOM05D004206 ORTHO05D003325 3.8e-08 63.5 150 37.3
Eucgr.A01242 Eucalyptus grandis HOM05D004206 ORTHO05D003325 5.0e-08 63.2 158 32.3
SEGI_11879 Sequoiadendron giganteum HOM05D004206 ORTHO05D003325 6.5e-08 62.8 134 37.3
CSS0031426 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D000289 8.5e-08 62.4 98 46.9
Thhalv10017918m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 8.5e-08 62.4 65 55.4
PSO648G0001 Papaver somniferum HOM05D004206 ORTHO05D003325 8.5e-08 62.4 90 43.3
THA.LOC104805432 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 8.5e-08 62.4 88 51.1
Thhalv10010719m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 1.5e-07 61.6 60 58.3
Lj5g0023302 Lotus japonicus HOM05D004206 ORTHO05D003325 1.5e-07 61.6 92 50.0
Glyma.13G132002 Glycine max HOM05D004206 ORTHO05D003325 1.9e-07 61.2 121 40.5
PSO339G1969 Papaver somniferum HOM05D004206 ORTHO05D003325 2.5e-07 60.8 112 38.4
AT3G53670 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 3.2e-07 60.5 59 59.3
Sp5g08700 Schrenkiella parvula HOM05D008508 ORTHO05D003325 3.2e-07 60.5 63 55.6
Carub.0004s1941 Capsella rubella HOM05D008508 ORTHO05D003325 4.2e-07 60.1 58 55.2
Carub.0005s2025 Capsella rubella HOM05D008508 ORTHO05D003325 4.2e-07 60.1 59 59.3
PGR004G2702 Punica granatum HOM05D004206 ORTHO05D003325 4.2e-07 60.1 233 27.9
AL5G34640 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 5.5e-07 59.7 83 54.2
CDE09G0187 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 5.5e-07 59.7 115 37.4
MBI14_g24307_MAGBIO Magnolia biondii HOM05D039687 ORTHO05D003325 5.5e-07 59.7 201 30.8
Actinidia05297 Actinidia chinensis HOM05D004206 ORTHO05D003325 7.2e-07 59.3 88 37.5
Sp4g19810 Schrenkiella parvula HOM05D008508 ORTHO05D003325 7.2e-07 59.3 61 54.1
BcaC02g11856 Brassica carinata HOM05D008508 ORTHO05D003325 9.4e-07 58.9 54 57.4
C04p10560 Brassica napus HOM05D008508 ORTHO05D003325 9.4e-07 58.9 54 57.4
BolC4t22647H Brassica oleracea HOM05D008508 ORTHO05D003325 9.4e-07 58.9 54 57.4
BraA09t40129Z Brassica rapa HOM05D008508 ORTHO05D003325 9.4e-07 58.9 61 52.5
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 1.2e-06 58.5 141 41.1
HanXRQChr11g0349321 Helianthus annuus HOM05D004206 ORTHO05D003325 1.6e-06 58.2 63 55.6
HPP92_009483 Vanilla planifolia HOM05D004206 ORTHO05D003325 1.6e-06 58.2 161 36.6
BcaB02g09283 Brassica carinata HOM05D008508 ORTHO05D003325 2.1e-06 57.8 67 50.7
BcaC08g44645 Brassica carinata HOM05D008508 ORTHO05D003325 2.7e-06 57.4 59 55.9
C06p21610 Brassica napus HOM05D008508 ORTHO05D003325 2.7e-06 57.4 59 55.9
TAR636G0761 Trochodendron aralioides HOM05D004206 ORTHO05D003325 2.7e-06 57.4 136 39.0
Lsat_1_v5_gn_1_55700 Lactuca sativa HOM05D004206 ORTHO05D003325 3.6e-06 57.0 84 48.8
Zm00001eb369110 Zea mays HOM05D033995 ORTHO05D003325 3.6e-06 57.0 82 48.8
BolC6t37349H Brassica oleracea HOM05D008508 ORTHO05D003325 4.7e-06 56.6 58 55.2
BraA07t29860Z Brassica rapa HOM05D008508 ORTHO05D003325 4.7e-06 56.6 77 44.2
BcaB06g28998 Brassica carinata HOM05D008508 ORTHO05D003325 6.1e-06 56.2 76 46.1
A07p21780 Brassica napus HOM05D008508 ORTHO05D003325 8.0e-06 55.8 59 55.9
BraA05t19816Z Brassica rapa HOM05D008508 ORTHO05D003325 8.0e-06 55.8 59 55.9


User provided reference genes

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