Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 6.0e-110 401.0 219 100.0
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.8e-90 336.3 206 90.3
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.3e-88 330.1 206 82.0
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 1.4e-79 300.1 211 84.8
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 2.7e-78 295.8 211 80.6
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.7e-78 295.8 211 80.6
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.9e-78 294.3 210 80.5
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 5.1e-77 291.6 203 73.9
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.3e-76 288.5 210 77.6
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 2.1e-75 286.2 213 77.0
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 1.1e-74 283.9 213 75.6
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.3e-72 276.9 210 75.2
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.3e-72 276.9 210 75.2
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.7e-72 276.6 207 71.0
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.2e-72 276.2 210 75.2
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 2.9e-72 275.8 218 73.9
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 4.9e-72 275.0 206 73.3
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 5.5e-71 271.6 208 77.4
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 9.3e-71 270.8 211 73.0
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.6e-70 270.0 197 75.1
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 7.9e-70 267.7 212 77.4
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.0e-69 267.3 207 73.9
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 2.3e-69 266.2 205 68.3
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.9e-69 265.4 210 69.5
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.9e-69 265.4 210 69.5
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 8.7e-69 264.2 208 74.5
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 9.6e-68 260.8 208 64.9
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.3e-67 260.4 209 66.0
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.6e-67 260.0 207 75.8
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 2.8e-67 259.2 211 73.0
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 3.7e-67 258.8 218 67.0
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.7e-67 258.8 209 67.5
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 6.2e-67 258.1 214 65.9
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 6.2e-67 258.1 208 66.8
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 8.1e-67 257.7 210 67.1
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 4.5e-65 251.9 221 64.7
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 7.6e-65 251.1 210 68.1
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 1.0e-64 250.8 210 68.6
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 4.9e-64 248.4 211 65.9
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 1.1e-63 247.3 203 70.0
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.4e-63 246.9 219 63.0
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.4e-63 246.9 208 66.8
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.9e-63 246.5 220 65.5
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 4.2e-63 245.4 205 61.5
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 9.3e-63 244.2 219 68.9
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 1.2e-62 243.8 207 61.4
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.2e-62 243.8 206 60.7
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 2.7e-62 242.7 207 61.4
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.7e-62 242.7 208 61.5
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 3.5e-62 242.3 206 59.7
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 3.5e-62 242.3 217 69.1
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 4.6e-62 241.9 227 64.3
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 7.9e-62 241.1 207 66.7
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 1.0e-61 240.7 208 61.5
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.0e-61 240.7 208 70.7
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.3e-61 240.4 221 67.9
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 2.3e-61 239.6 207 59.4
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 3.9e-61 238.8 208 66.8
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 6.7e-61 238.0 212 62.3
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 6.7e-61 238.0 200 68.0
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 1.1e-60 237.3 212 63.7
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 3.3e-60 235.7 214 65.9
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 4.3e-60 235.3 214 65.9
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 4.3e-60 235.3 219 67.6
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 9.6e-60 234.2 198 60.1
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.3e-59 233.8 210 59.0
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 1.6e-59 233.4 207 59.4
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.6e-59 233.4 211 62.6
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.6e-59 233.4 214 61.7
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 2.8e-59 232.6 219 57.1
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 3.7e-59 232.3 220 58.2
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 6.3e-59 231.5 212 66.0
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 8.2e-59 231.1 207 62.8
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.1e-58 230.7 213 60.6
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 1.4e-58 230.3 207 62.8
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 1.8e-58 229.9 214 65.0
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 2.4e-58 229.6 220 58.6
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 3.1e-58 229.2 206 60.7
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 4.1e-58 228.8 219 63.0
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.3e-58 228.4 210 65.2
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 6.9e-58 228.0 206 60.7
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 6.9e-58 228.0 230 58.7
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 1.5e-57 226.9 209 60.8
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.5e-57 226.9 218 63.3
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 2.0e-57 226.5 225 61.8
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.4e-57 225.7 209 56.9
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 4.5e-57 225.3 213 58.7
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 7.6e-57 224.6 206 58.7
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.7e-56 223.4 217 61.8
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 6.5e-56 221.5 238 62.2
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 5.5e-55 218.4 203 57.6
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 1.6e-54 216.9 221 61.5
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 2.1e-54 216.5 220 54.1
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.7e-54 216.1 209 62.7
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 4.6e-54 215.3 218 54.6
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 3.9e-53 212.2 225 58.2
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 3.3e-52 209.1 207 58.9
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 5.7e-52 208.4 221 58.4
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 7.4e-52 208.0 220 53.2
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 2.2e-51 206.5 202 58.4
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.8e-51 206.1 193 66.8
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 2.8e-51 206.1 209 58.4
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 3.7e-51 205.7 197 57.4
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.4e-50 203.0 158 67.7
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.1e-50 202.2 208 54.8
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 1.2e-49 200.7 148 73.0
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.5e-49 198.7 201 62.2
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 7.7e-49 198.0 212 54.2
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 2.2e-48 196.4 217 52.1
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.2e-48 196.4 154 68.2
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 6.5e-48 194.9 200 56.0
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 2.5e-47 193.0 217 54.8
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 1.7e-43 180.3 189 54.5
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.5e-41 173.7 131 69.5
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 3.4e-41 172.6 214 45.8
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.1e-39 167.5 186 52.7
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 9.4e-39 164.5 218 51.4
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.1e-38 163.3 186 50.5
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 7.9e-38 161.4 138 64.5
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 2.3e-37 159.8 152 50.7
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 7.4e-36 154.8 232 42.2
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 9.7e-36 154.5 223 41.3
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 2.8e-35 152.9 200 42.5
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 5.3e-34 148.7 158 49.4
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 1.2e-33 147.5 123 66.7
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 3.5e-33 146.0 205 40.0
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 1.0e-32 144.4 214 40.2
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 2.2e-32 143.3 212 45.3
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.2e-32 143.3 205 41.0
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.2e-32 143.3 211 41.2
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 2.9e-32 142.9 144 52.1
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 5.5e-31 138.7 116 57.8
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 5.5e-31 138.7 206 38.8
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 3.0e-29 132.9 148 45.3
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.0e-28 130.2 121 62.0
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.7e-27 127.1 121 61.2
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 8.2e-27 124.8 178 41.6
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 2.7e-25 119.8 135 45.2
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 2.7e-25 119.8 104 57.7
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.7e-24 117.1 207 35.7
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 8.5e-24 114.8 84 54.8
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 5.5e-23 112.1 197 38.6
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 2.7e-22 109.8 86 57.0
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 6.1e-22 108.6 88 50.0
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 5.2e-21 105.5 200 40.5
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.2e-20 104.4 187 34.8
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 5.7e-20 102.1 115 54.8
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 7.5e-20 101.7 133 39.8
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.3e-19 100.9 133 40.6
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.7e-19 99.4 87 49.4
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 4.1e-18 95.9 112 53.6
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 2.0e-17 93.6 107 43.0
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 4.2e-15 85.9 111 41.4
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 3.4e-12 76.3 175 36.0
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 1.7e-11 73.9 82 48.8
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 8.3e-11 71.6 79 49.4
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 1.4e-10 70.9 98 45.9
CiPaw.05G236000 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.5e-09 66.2 73 57.5
Oeu041536.1 Olea europaea HOM05D004429 ORTHO05D288779 8.0e-06 55.1 69 39.1


User provided reference genes

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