Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1110400 Malus domestica HOM05D007171 ORTHO05D008946 1.2e-169 599.7 306 100.0
Prupe.6G245500 Prunus persica HOM05D007171 ORTHO05D008946 9.0e-88 327.8 255 66.3
CiPaw.10G139300 Carya illinoinensis HOM05D007171 ORTHO05D008946 3.2e-77 292.7 238 62.6
RcHm_v2.0_Chr3g0468061 Rosa chinensis HOM05D007171 ORTHO05D008946 1.2e-71 274.2 239 59.4
Cfa017468 Carpinus fangiana HOM05D007171 ORTHO05D008946 2.5e-69 266.5 238 56.7
Eucgr.K03186 Eucalyptus grandis HOM05D007171 ORTHO05D008946 2.1e-68 263.5 237 58.2
Hma1.2p1_0350F.1_g132480 Hydrangea macrophylla HOM05D007171 ORTHO05D008946 6.0e-68 261.9 235 57.9
QL07p045896 Quercus lobata HOM05D007171 ORTHO05D008946 1.8e-67 260.4 240 55.8
GSVIVG01025575001 Vitis vinifera HOM05D007171 ORTHO05D008946 1.5e-66 257.3 222 57.7
Dinv37232 Davidia involucrata HOM05D007171 ORTHO05D008946 9.6e-66 254.6 239 54.4
Lj2C103T12 Lonicera japonica HOM05D007171 ORTHO05D008946 9.6e-66 254.6 238 54.2
Manes.09G071900 Manihot esculenta HOM05D007171 ORTHO05D008946 1.3e-65 254.2 236 53.8
Actinidia11236 Actinidia chinensis HOM05D007171 ORTHO05D008946 4.8e-65 252.3 235 53.2
Ciclev10012666m.g Citrus clementina HOM05D007171 ORTHO05D008946 6.2e-65 251.9 235 55.3
Atru.chr8.2508 Acer truncatum HOM05D007171 ORTHO05D008946 1.4e-64 250.8 235 57.0
FAN02G0958 Fragaria x ananassa HOM05D007171 ORTHO05D008946 6.9e-64 248.4 241 53.9
FAN14G2678 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.2e-63 247.7 241 54.4
FvH4_6g14830 Fragaria vesca HOM05D007171 ORTHO05D008946 2.0e-63 246.9 241 54.4
PGR004G1538 Punica granatum HOM05D007171 ORTHO05D008946 3.4e-63 246.1 240 52.9
CSS0013206 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 5.8e-63 245.4 235 52.3
CSS0034218 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 5.8e-63 245.4 235 52.3
Lalb_Chr21g0317461 Lupinus albus HOM05D007171 ORTHO05D008946 7.6e-63 245.0 235 51.9
Nn2g10565 Nelumbo nucifera HOM05D007171 ORTHO05D008946 2.9e-62 243.0 239 52.3
FAN05G0875 Fragaria x ananassa HOM05D007171 ORTHO05D008946 4.9e-62 242.3 266 50.0
FAN09G2349 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.1e-61 241.1 267 49.4
CANSAT80G0026 Cannabis sativa HOM05D007171 ORTHO05D008946 1.9e-61 240.4 242 55.0
Ca_04434_v3 Cicer arietinum L. HOM05D007171 ORTHO05D008946 3.5e-60 236.1 204 57.4
Sed0019751 Sechium edule HOM05D007171 ORTHO05D008946 4.6e-60 235.7 239 52.7
MELO3C003081.2 Cucumis melo HOM05D007171 ORTHO05D008946 1.0e-59 234.6 237 52.7
arahy.Tifrunner.gnm1.ann1.56UX32 Arachis hypogaea HOM05D007171 ORTHO05D008946 2.5e-58 229.9 224 53.1
arahy.Tifrunner.gnm1.ann1.J666ZG Arachis hypogaea HOM05D007171 ORTHO05D008946 2.5e-58 229.9 224 53.1
ATR0594G074 Amborella trichopoda HOM05D007171 ORTHO05D008946 1.3e-57 227.6 227 48.9
VMungo0464G1509 Vigna mungo HOM05D007171 ORTHO05D008946 1.6e-57 227.3 210 55.2
TWI74G0166 Tripterygium wilfordii HOM05D007171 ORTHO05D008946 2.2e-57 226.9 234 50.9
Medtr6g023885 Medicago truncatula HOM05D007171 ORTHO05D008946 1.1e-56 224.6 208 53.4
Glyma.05G078000 Glycine max HOM05D007171 ORTHO05D008946 1.4e-56 224.2 237 48.9
Cc06_g03280 Coffea canephora HOM05D007171 ORTHO05D008946 1.8e-56 223.8 235 50.2
Glyma.19G071700 Glycine max HOM05D007171 ORTHO05D008946 1.8e-56 223.8 237 48.1
Haze_20689 Corylus avellana HOM05D007171 ORTHO05D008946 1.5e-55 220.7 220 53.2
Phvul.004G054300 Phaseolus vulgaris HOM05D007171 ORTHO05D008946 2.6e-55 219.9 208 51.9
Peaxi162Scf00039g00419 Petunia axillaris HOM05D007171 ORTHO05D008946 4.5e-55 219.2 238 46.2
CsaV3_4G024490 Cucumis sativus L. HOM05D007171 ORTHO05D008946 1.0e-54 218.0 237 50.2
Gohir.A13G095390 Gossypium hirsutum HOM05D007171 ORTHO05D008946 2.2e-54 216.9 237 48.1
Gorai.001G248800 Gossypium raimondii HOM05D007171 ORTHO05D008946 2.9e-54 216.5 237 47.3
Thecc.05G049600 Theobroma cacao HOM05D007171 ORTHO05D008946 3.8e-54 216.1 237 46.4
Gohir.D13G097200 Gossypium hirsutum HOM05D007171 ORTHO05D008946 5.0e-54 215.7 237 47.3
HanXRQChr13g0399321 Helianthus annuus HOM05D007171 ORTHO05D008946 1.1e-53 214.5 239 50.2
Migut.L01644 Erythranthe guttata HOM05D007171 ORTHO05D008946 4.6e-52 209.1 236 48.7
EL10Ac7g17274 Beta vulgaris HOM05D007171 ORTHO05D008946 1.8e-51 207.2 218 48.2
THA.LOC104826994 Tarenaya hassleriana HOM05D007171 ORTHO05D008946 3.9e-51 206.1 237 45.6
Lj2g0011641 Lotus japonicus HOM05D007171 ORTHO05D008946 5.1e-51 205.7 233 47.6
SHI12609 Sapria himalayana HOM05D007171 ORTHO05D008946 5.1e-51 205.7 164 56.1
TPR.G16189 Trifolium pratense HOM05D007171 ORTHO05D008946 5.1e-51 205.7 209 49.3
Nitab4.5_0002774g0040 Nicotiana tabacum HOM05D007171 ORTHO05D008946 1.5e-50 204.1 238 45.4
MSTRG.10286 Avicennia marina HOM05D007171 ORTHO05D008946 2.5e-50 203.4 238 45.4
Nitab4.5_0000643g0130 Nicotiana tabacum HOM05D007171 ORTHO05D008946 4.3e-50 202.6 240 45.0
CDE04G2331 Ceratophyllum demersum HOM05D007171 ORTHO05D008946 3.7e-49 199.5 201 47.8
SalBow4G3339 Salvia bowleyana HOM05D007171 ORTHO05D008946 4.8e-49 199.1 201 49.8
AUR62036841 Chenopodium quinoa HOM05D007171 ORTHO05D008946 1.8e-48 197.2 228 45.6
Lsat_1_v5_gn_6_33220 Lactuca sativa HOM05D007171 ORTHO05D008946 3.1e-48 196.4 216 48.1
PGSC0003DMG400023935 Solanum tuberosum HOM05D007171 ORTHO05D008946 1.5e-47 194.1 238 42.9
Solyc09g005930.4 Solanum lycopersicum HOM05D007171 ORTHO05D008946 2.6e-47 193.4 238 42.0
Sopen09g001790 Solanum pennellii HOM05D007171 ORTHO05D008946 3.4e-47 193.0 238 42.4
BcaC06g32009 Brassica carinata HOM05D007171 ORTHO05D008946 5.9e-47 192.2 238 42.9
AUR62042289 Chenopodium quinoa HOM05D007171 ORTHO05D008946 7.7e-47 191.8 213 47.9
DCAR_017747 Daucus carota HOM05D007171 ORTHO05D008946 1.9e-45 187.2 236 41.5
BraA10t45334Z Brassica rapa HOM05D007171 ORTHO05D008946 4.2e-45 186.0 240 42.1
A10p32970 Brassica napus HOM05D007171 ORTHO05D008946 5.5e-45 185.7 240 42.1
BcaNung03278 Brassica carinata HOM05D007171 ORTHO05D008946 7.2e-45 185.3 239 42.3
Aa31LG1G22150 Aethionema arabicum HOM05D007171 ORTHO05D008946 1.2e-44 184.5 243 42.8
CAN.G350.19 Capsicum annuum HOM05D007171 ORTHO05D008946 2.7e-44 183.3 236 41.9
BolC9t60129H Brassica oleracea HOM05D007171 ORTHO05D008946 3.6e-44 183.0 240 42.1
C09p73940 Brassica napus HOM05D007171 ORTHO05D008946 4.7e-44 182.6 240 42.1
Thhalv10014568m.g Eutrema salsugineum HOM05D007171 ORTHO05D008946 6.1e-44 182.2 237 40.5
Duzib128G0424 Durio zibethinus HOM05D007171 ORTHO05D008946 1.0e-43 181.4 237 42.2
ECA233G5714 Erigeron canadensis HOM05D007171 ORTHO05D008946 1.4e-43 181.0 193 50.3
MBI14_g46135_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 2.3e-43 180.3 299 35.8
PSO339G0903 Papaver somniferum HOM05D007171 ORTHO05D008946 2.6e-42 176.8 175 50.3
PSO384G3756 Papaver somniferum HOM05D007171 ORTHO05D008946 4.4e-42 176.0 183 49.2
Carub.0006s0150 Capsella rubella HOM05D007171 ORTHO05D008946 8.2e-41 171.8 238 40.8
AT5G02740 Arabidopsis thaliana HOM05D007171 ORTHO05D008946 1.1e-40 171.4 239 40.6
Sc07g0006190 Simmondsia chinensis HOM05D007171 ORTHO05D008946 2.4e-40 170.2 181 46.4
SGA_v2.0_scaffold94G28650 Striga asiatica HOM05D007171 ORTHO05D008946 1.5e-39 167.5 251 39.4
AL6G11990 Arabidopsis lyrata HOM05D007171 ORTHO05D008946 3.5e-39 166.4 238 39.9
unitig_0.g696 Utricularia gibba HOM05D007171 ORTHO05D008946 1.3e-38 164.5 221 38.9
Potri.006G215800 Populus trichocarpa HOM05D007171 ORTHO05D008946 1.9e-37 160.6 262 37.0
vmacro20092 Vaccinium macrocarpon HOM05D007171 ORTHO05D008946 1.0e-35 154.8 159 50.9
Os03g0282900 Oryza sativa ssp. japonica HOM05D007171 ORTHO05D008946 3.3e-34 149.8 240 36.2
Psat1g085840 Pisum sativum HOM05D007171 ORTHO05D008946 4.4e-34 149.4 129 55.8
Sabra06G0166400 Salix brachista HOM05D007171 ORTHO05D008946 2.8e-33 146.7 196 39.3
SEGI_11390 Sequoiadendron giganteum HOM05D007171 ORTHO05D008946 5.3e-32 142.5 203 40.4
Zm00001eb397290 Zea mays HOM05D007171 ORTHO05D008946 9.1e-32 141.7 211 36.0
COL.COLO4_10310 Corchorus olitorius HOM05D007171 ORTHO05D008946 5.2e-27 125.9 231 35.5
CARHR210640 Cardamine hirsuta HOM05D007171 ORTHO05D008946 6.5e-22 109.0 161 39.1
ClCG04G008670 Citrullus lanatus HOM05D007171 ORTHO05D008946 6.5e-22 109.0 196 38.3
Aqoxy2G01927 Aquilegia oxysepala HOM05D007171 ORTHO05D008946 1.1e-21 108.2 113 47.8
Oeu035685.1 Olea europaea HOM05D007171 ORTHO05D008946 3.2e-21 106.7 82 57.3
Ah.08g212060 Amaranthus hybridus HOM05D007171 ORTHO05D008946 1.2e-20 104.8 91 48.4
HPP92_001690 Vanilla planifolia HOM05D007171 ORTHO05D008946 8.0e-20 102.1 122 41.8
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 2.6e-18 97.1 80 56.2
Ah.08g212070 Amaranthus hybridus HOM05D007171 ORTHO05D008946 1.0e-14 85.1 84 52.4
MBI14_g16337_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 1.1e-13 81.6 61 62.3
Pp3c16_16690 Physcomitrium patens HOM05D007171 ORTHO05D008946 4.7e-12 76.3 192 29.2
HanXRQChr13g0399281 Helianthus annuus HOM05D007171 ORTHO05D008946 2.6e-10 70.5 88 46.6
CBR_g5643 Chara braunii HOM05D062952 ORTHO05D008946 2.7e-07 60.5 219 22.4


User provided reference genes

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