Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 5.8e-124 447.6 229 100.0
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 2.0e-108 396.0 229 85.2
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 1.1e-77 293.9 230 70.0
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 9.7e-71 270.8 224 60.7
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 3.7e-70 268.9 230 63.9
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 1.8e-69 266.5 220 60.0
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.6e-68 263.5 230 62.6
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.6e-68 263.5 230 62.6
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 1.6e-68 263.5 230 58.3
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 4.5e-68 261.9 224 58.9
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 7.7e-68 261.2 211 62.6
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.0e-67 260.8 230 57.8
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 2.2e-67 259.6 230 59.1
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 2.9e-67 259.2 229 58.5
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 6.5e-67 258.1 222 60.4
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 2.5e-66 256.1 216 59.7
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 3.2e-66 255.8 230 60.9
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 4.2e-66 255.4 234 57.3
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 7.2e-66 254.6 231 57.6
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.2e-65 253.8 230 62.2
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.7e-65 252.7 219 58.9
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 3.6e-65 252.3 230 56.1
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 4.7e-65 251.9 229 55.9
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 1.0e-64 250.8 230 54.3
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 1.4e-64 250.4 216 57.4
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 1.8e-64 250.0 222 58.1
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 1.8e-64 250.0 229 54.6
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.3e-64 249.6 219 58.0
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 6.8e-64 248.1 229 55.5
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 2.0e-63 246.5 255 51.0
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 2.6e-63 246.1 216 57.4
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 2.6e-63 246.1 219 56.6
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 1.3e-62 243.8 225 56.4
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 1.7e-62 243.4 230 56.1
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 8.3e-62 241.1 229 55.5
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 1.1e-61 240.7 229 56.3
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 2.4e-61 239.6 227 55.1
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 2.4e-61 239.6 212 56.1
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 3.1e-61 239.2 231 58.4
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 7.0e-61 238.0 224 54.5
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 1.2e-60 237.3 226 55.8
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 3.5e-60 235.7 216 56.0
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 5.9e-60 235.0 212 55.2
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 7.7e-60 234.6 229 57.6
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 1.3e-59 233.8 226 54.9
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 1.7e-59 233.4 189 60.3
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 2.2e-59 233.0 216 55.6
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 2.9e-59 232.6 253 52.2
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 5.0e-59 231.9 229 57.2
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 6.5e-59 231.5 223 53.4
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 1.1e-58 230.7 210 55.2
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 1.5e-58 230.3 230 53.0
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 2.5e-58 229.6 229 55.5
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 3.2e-58 229.2 233 54.9
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 5.5e-58 228.4 226 56.2
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 5.5e-58 228.4 222 54.1
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 7.2e-58 228.0 230 55.2
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 7.2e-58 228.0 222 52.7
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 7.2e-58 228.0 222 53.2
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 7.2e-58 228.0 198 57.6
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 9.4e-58 227.6 260 46.9
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 1.2e-57 227.3 221 55.7
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 1.2e-57 227.3 234 57.7
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 2.1e-57 226.5 233 54.9
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 2.1e-57 226.5 208 55.3
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 2.7e-57 226.1 231 56.7
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 2.7e-57 226.1 226 55.3
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 8.0e-57 224.6 207 59.4
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 1.0e-56 224.2 215 52.6
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 1.4e-56 223.8 232 51.7
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.4e-56 223.8 196 59.2
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 1.8e-56 223.4 230 52.6
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 2.3e-56 223.0 230 56.1
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.3e-56 223.0 218 55.5
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.3e-56 223.0 216 54.2
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 5.2e-56 221.9 229 52.0
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 6.8e-56 221.5 223 57.0
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 1.2e-55 220.7 238 50.4
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 1.5e-55 220.3 207 55.1
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 2.0e-55 219.9 233 54.1
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.0e-55 219.9 222 50.0
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 2.6e-55 219.5 211 54.0
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.4e-55 219.2 217 57.1
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 4.4e-55 218.8 233 54.5
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 4.4e-55 218.8 233 55.8
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 5.7e-55 218.4 222 51.4
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 7.5e-55 218.0 220 50.5
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 2.2e-54 216.5 211 53.1
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 2.2e-54 216.5 228 51.8
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 2.8e-54 216.1 233 54.1
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 2.8e-54 216.1 222 51.4
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 2.8e-54 216.1 198 56.1
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 4.8e-54 215.3 232 54.3
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 4.8e-54 215.3 220 50.9
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 6.3e-54 214.9 233 54.1
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 6.3e-54 214.9 236 54.2
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 8.3e-54 214.5 234 53.4
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 8.3e-54 214.5 230 50.9
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 8.3e-54 214.5 201 54.2
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 1.1e-53 214.2 220 50.9
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 1.8e-53 213.4 198 54.0
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.4e-53 213.0 198 53.5
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 2.4e-53 213.0 237 47.7
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.4e-53 213.0 199 55.8
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 4.1e-53 212.2 205 51.7
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.0e-52 209.9 217 50.2
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 4.5e-52 208.8 212 52.4
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 7.7e-52 208.0 212 50.5
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 7.7e-52 208.0 223 48.0
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 1.7e-51 206.8 210 50.0
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.9e-51 206.1 245 46.9
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 2.9e-51 206.1 245 49.0
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.5e-50 203.8 206 50.5
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 7.2e-50 201.4 234 49.1
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 7.2e-50 201.4 218 49.5
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 1.0e-48 197.6 173 58.4
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 1.8e-48 196.8 205 53.7
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.8e-48 196.8 208 48.6
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 8.9e-48 194.5 149 63.1
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.5e-47 193.7 221 51.6
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 5.7e-47 191.8 202 52.5
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 2.2e-46 189.9 213 47.9
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 4.9e-46 188.7 230 50.4
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 4.9e-46 188.7 197 49.2
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 6.3e-46 188.3 226 44.7
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 8.3e-46 188.0 267 39.7
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 1.1e-45 187.6 218 46.3
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.1e-45 187.6 206 45.6
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 1.4e-45 187.2 230 49.6
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 7.0e-45 184.9 214 46.7
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 3.5e-44 182.6 229 48.9
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 4.5e-44 182.2 197 45.2
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.3e-43 180.6 196 49.5
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.3e-43 180.6 196 49.5
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 2.9e-43 179.5 229 42.8
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 3.9e-43 179.1 238 41.2
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 1.9e-42 176.8 226 42.0
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 4.3e-42 175.6 218 43.1
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 4.7e-41 172.2 221 43.0
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 8.0e-41 171.4 221 43.0
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 1.8e-40 170.2 225 49.3
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 1.2e-39 167.5 203 44.8
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 1.5e-39 167.2 225 48.9
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 2.0e-39 166.8 140 57.9
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 2.0e-39 166.8 130 62.3
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 4.4e-39 165.6 203 53.7
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 9.8e-39 164.5 193 46.6
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 1.3e-38 164.1 207 49.3
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 1.7e-38 163.7 255 42.4
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 4.9e-38 162.2 208 43.3
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 4.1e-37 159.1 184 45.1
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 1.3e-35 154.1 143 60.1
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.2e-33 147.5 142 51.4
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 2.6e-31 139.8 165 47.3
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.3e-30 137.5 188 43.6
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 3.5e-28 129.4 227 35.7
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 4.6e-28 129.0 218 35.3
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.3e-27 127.5 181 40.3
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.7e-27 127.1 144 44.4
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 7.3e-26 121.7 139 45.3
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 3.6e-25 119.4 144 41.0
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 2.3e-24 116.7 122 50.0
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 1.2e-17 94.4 109 43.1
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.1e-16 91.3 159 34.6
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 3.8e-14 82.8 63 57.1
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 1.4e-13 80.9 88 56.8
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 1.5e-10 70.9 113 37.2
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 5.6e-10 68.9 113 36.3
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 6.2e-09 65.5 75 44.0
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 8.1e-09 65.1 60 53.3
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.4e-08 64.3 67 47.8
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 1.4e-08 64.3 72 50.0
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 2.4e-08 63.5 37 70.3
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 9.9e-07 58.2 38 68.4
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 1.3e-06 57.8 37 64.9


User provided reference genes

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