Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 2.3e-20 101.3 51 100.0
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 5.2e-17 90.1 50 86.0
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 8.9e-17 89.4 50 84.0
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 8.9e-17 89.4 50 84.0
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 8.9e-17 89.4 50 84.0
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 1.5e-16 88.6 50 84.0
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 2.0e-16 88.2 50 84.0
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 2.0e-16 88.2 50 82.0
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 3.4e-16 87.4 49 83.7
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 4.4e-16 87.0 50 82.0
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 4.4e-16 87.0 50 82.0
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 5.8e-16 86.7 50 82.0
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 7.6e-16 86.3 48 83.3
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 7.6e-16 86.3 48 83.3
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 7.6e-16 86.3 50 82.0
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 7.6e-16 86.3 50 82.0
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 7.6e-16 86.3 48 85.4
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 7.6e-16 86.3 48 85.4
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 9.9e-16 85.9 50 82.0
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 1.3e-15 85.5 48 83.3
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 1.7e-15 85.1 50 82.0
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 1.7e-15 85.1 47 85.1
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 2.2e-15 84.7 50 82.0
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 2.2e-15 84.7 50 80.0
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 2.2e-15 84.7 50 80.0
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 2.9e-15 84.3 48 81.2
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 2.9e-15 84.3 48 81.2
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 2.9e-15 84.3 48 81.2
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 2.9e-15 84.3 48 81.2
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 2.9e-15 84.3 48 81.2
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 2.9e-15 84.3 48 81.2
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 2.9e-15 84.3 48 81.2
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 2.9e-15 84.3 48 81.2
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 2.9e-15 84.3 48 81.2
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 2.9e-15 84.3 50 80.0
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 2.9e-15 84.3 48 81.2
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 3.8e-15 84.0 48 83.3
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 4.9e-15 83.6 50 80.0
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 4.9e-15 83.6 50 80.0
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 4.9e-15 83.6 50 80.0
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 4.9e-15 83.6 50 80.0
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 4.9e-15 83.6 50 80.0
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 4.9e-15 83.6 48 81.2
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 6.4e-15 83.2 50 80.0
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 6.4e-15 83.2 49 81.6
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 6.4e-15 83.2 48 81.2
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 6.4e-15 83.2 48 81.2
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 8.4e-15 82.8 48 81.2
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 8.4e-15 82.8 48 81.2
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 8.4e-15 82.8 48 83.3
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 8.4e-15 82.8 49 79.6
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 1.1e-14 82.4 47 80.9
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 1.1e-14 82.4 47 80.9
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 1.1e-14 82.4 48 81.2
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 1.1e-14 82.4 49 79.6
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 1.1e-14 82.4 49 79.6
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 1.1e-14 82.4 50 78.0
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 1.1e-14 82.4 50 80.0
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 1.4e-14 82.0 47 83.0
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 1.4e-14 82.0 49 79.6
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 1.4e-14 82.0 49 79.6
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 1.4e-14 82.0 48 79.2
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 1.4e-14 82.0 50 78.0
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 1.4e-14 82.0 49 81.6
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 1.9e-14 81.6 50 78.0
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 1.9e-14 81.6 49 79.6
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 1.9e-14 81.6 47 83.0
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 1.9e-14 81.6 49 79.6
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 1.9e-14 81.6 49 81.6
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 2.4e-14 81.3 50 80.0
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 2.4e-14 81.3 49 77.6
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 2.4e-14 81.3 49 77.6
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 2.4e-14 81.3 49 77.6
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 3.2e-14 80.9 47 83.0
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 4.2e-14 80.5 47 83.0
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 4.2e-14 80.5 47 80.9
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 4.2e-14 80.5 50 74.0
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 5.4e-14 80.1 47 78.7
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 5.4e-14 80.1 47 78.7
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 5.4e-14 80.1 49 77.6
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 5.4e-14 80.1 49 77.6
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 5.4e-14 80.1 49 77.6
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 5.4e-14 80.1 47 80.9
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 7.1e-14 79.7 48 77.1
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 7.1e-14 79.7 49 77.6
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 7.1e-14 79.7 47 80.9
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 9.2e-14 79.3 49 77.6
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 9.2e-14 79.3 50 76.0
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 9.2e-14 79.3 50 74.0
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 9.2e-14 79.3 49 77.6
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 9.2e-14 79.3 48 79.2
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 1.2e-13 79.0 49 75.5
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 1.2e-13 79.0 49 75.5
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 1.6e-13 78.6 45 82.2
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 1.6e-13 78.6 50 78.0
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 1.6e-13 78.6 48 79.2
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 6.0e-13 76.6 49 73.5
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 6.0e-13 76.6 47 78.7
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 7.8e-13 76.3 49 73.5
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 1.0e-12 75.9 47 76.6
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 1.0e-12 75.9 49 71.4
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 3.0e-12 74.3 45 77.8
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 5.1e-12 73.6 48 70.8
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 6.6e-12 73.2 47 74.5
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 6.6e-12 73.2 48 70.8
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 6.6e-12 73.2 48 70.8
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 1.9e-11 71.6 49 69.4
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 3.6e-10 67.4 46 67.4
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 3.6e-10 67.4 47 70.2
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 8.1e-10 66.2 45 66.7
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 9.0e-09 62.8 50 58.0


User provided reference genes

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