Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 6.2e-120 434.1 214 100.0
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 3.9e-90 335.1 208 84.6
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 2.5e-89 332.4 208 83.7
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 2.0e-86 322.8 208 80.8
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 1.0e-85 320.5 208 79.8
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.2e-83 313.5 208 77.9
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 1.6e-83 313.2 206 79.1
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 3.6e-83 312.0 208 77.9
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 1.0e-82 310.5 208 77.4
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.4e-82 310.1 208 77.4
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 5.1e-82 308.1 208 77.4
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 6.7e-82 307.8 208 76.4
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 6.7e-82 307.8 208 76.4
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 8.8e-82 307.4 208 77.9
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 8.8e-82 307.4 208 77.9
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 8.8e-82 307.4 213 76.5
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 8.8e-82 307.4 208 75.5
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 1.1e-81 307.0 208 76.9
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 1.1e-81 307.0 208 76.4
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 1.1e-81 307.0 208 76.0
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 1.5e-81 306.6 208 76.4
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 1.5e-81 306.6 208 76.4
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.5e-81 306.6 203 77.8
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 3.3e-81 305.4 208 75.5
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 3.3e-81 305.4 212 75.0
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 3.3e-81 305.4 208 76.0
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 4.3e-81 305.1 208 75.5
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 4.3e-81 305.1 208 76.0
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 5.7e-81 304.7 208 75.0
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 5.7e-81 304.7 213 73.7
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 9.7e-81 303.9 208 75.5
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 9.7e-81 303.9 208 75.0
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 1.3e-80 303.5 208 75.0
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 1.3e-80 303.5 208 75.0
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 1.3e-80 303.5 208 75.0
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 1.3e-80 303.5 208 75.5
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 1.3e-80 303.5 208 75.0
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 1.3e-80 303.5 208 75.0
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 1.3e-80 303.5 206 76.2
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 1.7e-80 303.1 206 74.8
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 2.2e-80 302.8 208 75.5
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 2.2e-80 302.8 208 75.0
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 2.8e-80 302.4 208 75.0
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 3.7e-80 302.0 208 75.0
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 3.7e-80 302.0 208 74.5
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 6.3e-80 301.2 208 73.6
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 6.3e-80 301.2 208 73.1
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 8.2e-80 300.8 208 74.0
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 1.1e-79 300.4 208 75.0
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 1.4e-79 300.1 208 74.0
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 1.4e-79 300.1 208 74.5
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.4e-79 300.1 208 74.0
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 2.4e-79 299.3 207 75.4
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 3.1e-79 298.9 208 73.6
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 3.1e-79 298.9 208 74.0
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 3.1e-79 298.9 208 74.0
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 3.1e-79 298.9 202 76.2
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 4.1e-79 298.5 202 76.7
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 4.1e-79 298.5 208 74.0
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 6.9e-79 297.7 207 73.9
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 6.9e-79 297.7 202 76.2
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 9.1e-79 297.4 202 75.7
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 9.1e-79 297.4 204 75.5
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 1.5e-78 296.6 208 73.1
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 2.0e-78 296.2 201 76.1
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 3.4e-78 295.4 202 75.7
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 5.9e-78 294.7 208 73.1
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 5.0e-77 291.6 198 77.3
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 6.5e-77 291.2 220 70.5
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 6.5e-77 291.2 202 75.2
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 8.5e-77 290.8 207 72.0
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 1.9e-76 289.7 208 73.6
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 3.2e-76 288.9 228 68.0
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 3.2e-76 288.9 208 72.1
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 4.2e-76 288.5 208 70.7
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 4.2e-76 288.5 207 72.9
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 5.5e-76 288.1 208 71.6
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 1.2e-75 287.0 208 71.6
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 2.1e-75 286.2 208 71.6
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 7.9e-75 284.3 208 71.2
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 1.0e-74 283.9 202 71.3
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 1.0e-74 283.9 208 70.7
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 1.0e-74 283.9 208 71.2
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.0e-74 283.9 208 70.2
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 1.4e-74 283.5 208 69.2
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 6.7e-74 281.2 203 71.4
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 1.1e-73 280.4 208 72.1
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 2.0e-73 279.6 203 71.4
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 2.6e-73 279.3 203 71.4
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 2.6e-73 279.3 203 71.4
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 2.6e-73 279.3 202 71.3
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 4.4e-73 278.5 203 70.9
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 5.7e-73 278.1 203 70.9
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 4.1e-71 271.9 208 69.2
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 7.7e-70 267.7 208 68.3
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 1.5e-68 263.5 208 64.4
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 6.1e-67 258.1 181 76.2
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.8e-66 256.5 203 67.5
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 1.8e-66 256.5 181 71.8
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 4.4e-65 251.9 209 65.6
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 4.4e-65 251.9 203 68.5
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 1.3e-64 250.4 181 72.4
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.3e-64 250.4 178 71.9
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.3e-64 250.4 187 70.6
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 1.7e-64 250.0 180 73.3
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 7.7e-62 241.1 208 63.5
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 2.7e-59 232.6 181 68.5
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 7.5e-57 224.6 168 68.5
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 7.5e-57 224.6 159 74.2
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 3.1e-55 219.2 157 72.0
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 1.6e-54 216.9 196 62.8
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 1.2e-51 207.2 184 60.3
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 2.8e-48 196.1 210 49.5
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 5.9e-46 188.3 203 46.8
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 5.9e-46 188.3 198 50.5
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 5.0e-45 185.3 187 58.8
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 7.3e-44 181.4 95 91.6
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 2.1e-43 179.9 100 87.0
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 6.1e-43 178.3 95 90.5
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 2.3e-42 176.4 95 88.4
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 2.3e-42 176.4 95 89.5
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 4.9e-40 168.7 92 89.1
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.8e-39 166.8 86 91.9
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 7.0e-39 164.9 92 85.9
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 1.6e-38 163.7 130 66.2
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 2.0e-38 163.3 95 77.9
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 2.1e-35 153.3 182 53.3
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.2e-30 137.5 92 77.2
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 5.0e-29 132.1 66 95.5
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 4.7e-27 125.6 82 74.4
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 2.0e-25 120.2 154 44.8
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 1.2e-22 110.9 75 76.0
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.7e-22 109.8 67 82.1
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 4.4e-17 92.4 48 87.5
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 2.5e-12 76.6 49 75.5
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 3.3e-12 76.3 58 63.8
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 8.9e-10 68.2 201 25.4
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 2.6e-09 66.6 201 25.4
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 3.4e-09 66.2 201 26.4
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 7.6e-09 65.1 203 26.6
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 2.2e-08 63.5 203 25.1
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 2.9e-08 63.2 203 24.1
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 2.9e-08 63.2 203 26.1
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 3.8e-08 62.8 202 24.8
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 4.9e-08 62.4 205 24.4
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 4.9e-08 62.4 201 23.9
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 1.4e-07 60.8 202 22.8
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.9e-07 60.5 201 27.9
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 4.2e-07 59.3 204 23.0
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 7.1e-07 58.5 202 24.3
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 7.1e-07 58.5 202 22.8
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 9.3e-07 58.2 200 24.5
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.2e-06 57.8 200 23.5
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.2e-06 57.8 203 23.6
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 1.6e-06 57.4 201 23.9
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.7e-06 56.6 203 23.6
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 3.5e-06 56.2 200 23.0
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 3.5e-06 56.2 203 23.6
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 6.0e-06 55.5 180 24.4


User provided reference genes

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