Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 1.7e-235 818.9 403 100.0
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 5.3e-197 691.0 403 83.9
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 3.7e-190 668.3 403 81.4
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 6.3e-190 667.5 403 81.1
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 3.1e-189 665.2 403 80.9
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.1e-189 665.2 403 80.6
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.6e-188 662.1 403 80.6
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.4e-188 661.8 403 80.6
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 5.5e-186 654.4 397 80.4
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 4.0e-168 595.1 405 72.6
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 2.6e-167 592.4 403 71.0
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 6.3e-166 587.8 407 70.8
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 7.0e-165 584.3 407 70.5
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 1.6e-164 583.2 404 69.8
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 4.5e-164 581.6 409 70.7
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.7e-163 579.7 412 71.1
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 2.2e-163 579.3 413 69.0
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 1.9e-162 576.2 371 73.3
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 1.2e-161 573.5 432 67.8
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 3.6e-161 572.0 405 68.1
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 3.6e-161 572.0 405 68.1
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 1.0e-160 570.5 405 70.6
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.4e-160 570.1 402 69.2
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 1.4e-160 570.1 401 70.3
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 2.3e-160 569.3 395 70.1
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 6.8e-160 567.8 402 69.2
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 8.8e-160 567.4 406 68.2
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 3.4e-159 565.5 408 70.3
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 3.4e-159 565.5 435 66.7
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 1.7e-158 563.1 406 67.7
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 8.3e-158 560.8 414 66.9
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.4e-157 560.1 403 68.5
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 1.4e-157 560.1 404 68.1
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.8e-157 559.7 403 69.2
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 4.1e-157 558.5 396 69.7
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 5.4e-157 558.1 403 68.5
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 9.2e-157 557.4 370 74.1
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 1.6e-156 556.6 411 67.4
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 2.0e-156 556.2 389 69.7
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 2.0e-156 556.2 403 68.2
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 3.5e-156 555.4 402 66.9
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 5.9e-156 554.7 400 67.8
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 1.3e-155 553.5 385 68.3
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 1.7e-155 553.1 379 70.4
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 2.3e-155 552.7 410 66.6
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 3.8e-155 552.0 405 67.4
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 2.5e-154 549.3 371 72.0
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 4.3e-154 548.5 405 67.7
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 9.5e-154 547.4 406 67.5
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 9.5e-154 547.4 406 67.5
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 9.5e-154 547.4 367 70.8
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.2e-153 547.0 403 67.7
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 2.8e-153 545.8 399 67.9
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 4.7e-153 545.0 405 65.4
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 4.7e-153 545.0 403 67.5
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 1.0e-152 543.9 405 66.2
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 2.3e-152 542.7 405 67.4
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 2.3e-152 542.7 405 67.4
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 2.3e-152 542.7 405 66.2
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 3.0e-152 542.3 391 68.5
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 3.0e-152 542.3 396 67.4
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 3.0e-152 542.3 403 67.7
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 4.0e-152 542.0 405 66.4
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 1.5e-151 540.0 405 66.2
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 1.5e-151 540.0 402 66.2
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 2.0e-151 539.7 405 65.7
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 2.6e-151 539.3 404 65.1
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 2.6e-151 539.3 408 66.7
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 5.7e-151 538.1 403 65.3
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 1.3e-150 537.0 404 66.8
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 1.7e-150 536.6 380 68.9
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 1.6e-148 530.0 382 68.6
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 1.6e-148 530.0 369 67.5
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 5.9e-148 528.1 395 65.3
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 1.7e-147 526.6 371 69.5
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 2.3e-147 526.2 371 69.3
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 5.6e-146 521.5 396 65.4
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 7.3e-146 521.2 396 64.9
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 7.3e-146 521.2 377 66.3
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 2.8e-145 519.2 387 65.1
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 3.6e-145 518.8 380 66.1
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 4.7e-145 518.5 380 66.6
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 3.1e-144 515.8 403 64.0
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 5.2e-144 515.0 395 66.3
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 7.5e-143 511.1 373 67.0
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 1.3e-142 510.4 402 62.7
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 2.9e-142 509.2 398 64.1
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 8.3e-142 507.7 405 63.5
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.4e-141 506.9 409 61.4
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 5.4e-141 505.0 409 61.1
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 3.5e-140 502.3 407 63.6
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 7.8e-140 501.1 403 62.5
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 2.3e-139 499.6 439 56.9
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 8.6e-139 497.7 357 67.8
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 2.5e-138 496.1 385 63.9
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 4.4e-135 485.3 372 63.4
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 9.8e-135 484.2 382 62.3
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.7e-134 483.4 379 62.5
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 2.2e-134 483.0 387 61.0
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 2.9e-134 482.6 387 61.0
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 8.3e-134 481.1 373 60.9
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 8.3e-134 481.1 384 62.2
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 8.6e-131 471.1 358 66.2
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 4.3e-130 468.8 394 61.4
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 1.6e-129 466.8 378 63.0
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 3.5e-124 449.1 390 58.7
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.1e-122 444.1 403 58.1
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 1.6e-121 440.3 363 58.7
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 2.8e-121 439.5 289 71.6
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 7.6e-119 431.4 288 71.9
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 1.7e-118 430.3 288 71.5
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 1.4e-117 427.2 380 56.1
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 2.5e-114 416.4 376 56.4
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 1.6e-113 413.7 599 41.6
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 1.7e-110 403.7 378 54.5
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 5.4e-109 398.7 376 52.7
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 8.7e-107 391.3 262 69.8
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 4.3e-106 389.0 266 67.3
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 2.1e-105 386.7 356 57.6
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 2.8e-105 386.3 256 70.3
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 1.8e-104 383.6 380 50.5
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 3.4e-103 379.4 370 53.2
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 2.3e-99 366.7 253 67.2
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.8e-96 357.1 376 51.6
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 2.4e-96 356.7 247 65.6
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 3.1e-96 356.3 246 65.4
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 9.0e-96 354.8 241 69.3
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 2.6e-95 353.2 368 48.4
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 1.0e-94 351.3 250 65.2
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 1.9e-93 347.1 400 47.0
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 5.7e-90 335.5 272 62.5
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 5.3e-88 328.9 271 61.6
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 3.2e-85 319.7 264 62.9
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 3.9e-83 312.8 359 48.2
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 8.2e-81 305.1 193 72.5
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 3.3e-66 256.5 157 75.8
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 4.4e-58 229.6 289 48.1
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.8e-51 207.6 211 50.2
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 6.8e-51 205.7 233 49.4
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 2.7e-47 193.7 130 69.2
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 1.6e-39 167.9 407 34.4
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 1.6e-39 167.9 151 58.3
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 2.0e-39 167.5 110 70.0
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 4.0e-35 153.3 156 51.9
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 8.9e-35 152.1 106 65.1
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.2e-34 151.8 174 50.0
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 4.9e-33 146.4 372 30.4
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 5.0e-30 136.3 275 33.1
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 2.1e-23 114.4 85 60.0
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 6.0e-23 112.8 99 53.5
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 1.9e-21 107.8 93 57.0
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 1.6e-20 104.8 93 54.8
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 1.6e-20 104.8 290 30.3
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 1.8e-19 101.3 93 53.8
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 2.3e-14 84.3 94 46.8
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 4.0e-11 73.6 52 61.5
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 1.5e-10 71.6 48 58.3
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 5.8e-10 69.7 55 56.4
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 2.9e-09 67.4 59 50.8
MELO3C035473.2 Cucumis melo HOM05D040713 ORTHO05D005180 7.8e-07 59.3 43 69.8


User provided reference genes

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