Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 4.3e-40 167.5 85 100.0
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 1.5e-24 115.9 60 93.3
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 9.6e-24 113.2 60 88.3
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 1.3e-23 112.8 61 93.4
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 2.1e-23 112.1 56 94.6
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 2.1e-23 112.1 61 91.8
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.8e-23 110.9 61 91.8
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 4.8e-23 110.9 61 91.8
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 4.8e-23 110.9 59 94.9
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 6.2e-23 110.5 61 90.2
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 6.2e-23 110.5 57 89.5
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 6.2e-23 110.5 61 90.2
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 6.2e-23 110.5 59 91.5
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 6.2e-23 110.5 58 89.7
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 6.2e-23 110.5 61 90.2
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 8.2e-23 110.2 61 90.2
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 8.2e-23 110.2 60 86.7
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 8.2e-23 110.2 61 90.2
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 1.1e-22 109.8 61 91.8
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 1.1e-22 109.8 61 91.8
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 1.1e-22 109.8 61 90.2
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 1.1e-22 109.8 61 90.2
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 1.4e-22 109.4 58 87.9
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 1.8e-22 109.0 61 88.5
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 1.8e-22 109.0 61 88.5
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 1.8e-22 109.0 61 90.2
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 2.4e-22 108.6 61 88.5
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 4.0e-22 107.8 56 89.3
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 4.0e-22 107.8 56 91.1
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 4.0e-22 107.8 61 88.5
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 5.3e-22 107.5 56 89.3
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 5.3e-22 107.5 61 85.2
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 6.9e-22 107.1 55 90.9
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 6.9e-22 107.1 61 86.9
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 6.9e-22 107.1 61 86.9
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 6.9e-22 107.1 55 90.9
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 6.9e-22 107.1 61 86.9
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 6.9e-22 107.1 55 90.9
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 6.9e-22 107.1 55 90.9
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 6.9e-22 107.1 61 86.9
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 9.0e-22 106.7 61 86.9
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 9.0e-22 106.7 61 88.5
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 1.2e-21 106.3 56 87.5
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 1.2e-21 106.3 56 89.3
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 1.2e-21 106.3 56 87.5
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 2.0e-21 105.5 61 85.2
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 2.0e-21 105.5 61 86.9
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 2.6e-21 105.1 60 80.0
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 2.6e-21 105.1 60 86.7
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 3.4e-21 104.8 54 90.7
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 3.4e-21 104.8 56 85.7
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 3.4e-21 104.8 56 89.3
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 4.5e-21 104.4 60 86.7
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 7.6e-21 103.6 55 87.3
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 7.6e-21 103.6 53 90.6
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 1.0e-20 103.2 53 90.6
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 1.0e-20 103.2 61 85.2
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 1.0e-20 103.2 56 83.9
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 1.3e-20 102.8 58 82.8
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 1.3e-20 102.8 54 85.2
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.7e-20 102.4 60 85.0
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 1.7e-20 102.4 54 85.2
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 6.5e-20 100.5 54 88.9
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 6.5e-20 100.5 61 82.0
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 1.1e-19 99.8 53 88.7
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 1.4e-19 99.4 55 85.5
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 1.4e-19 99.4 51 90.2
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 1.4e-19 99.4 56 82.1
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 1.4e-19 99.4 56 82.1
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 1.4e-19 99.4 56 82.1
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 1.9e-19 99.0 53 84.9
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 4.2e-19 97.8 55 81.8
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 4.2e-19 97.8 55 81.8
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 4.2e-19 97.8 55 81.8
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 4.2e-19 97.8 55 81.8
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 4.2e-19 97.8 55 81.8
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 4.2e-19 97.8 55 81.8
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 5.5e-19 97.4 58 77.6
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 7.1e-19 97.1 53 84.9
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 1.2e-18 96.3 55 81.8
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 1.2e-18 96.3 55 81.8
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 1.2e-18 96.3 55 81.8
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 1.2e-18 96.3 54 83.3
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 2.1e-18 95.5 58 74.1
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 3.5e-18 94.7 59 78.0
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 2.3e-17 92.0 52 80.8
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 2.3e-17 92.0 54 77.8
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 8.7e-17 90.1 53 90.6
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 8.7e-17 90.1 54 75.9
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 5.3e-14 80.9 51 66.7
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 1.2e-13 79.7 58 63.8
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 1.5e-13 79.3 38 97.4
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 1.7e-12 75.9 37 91.9
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 3.8e-12 74.7 55 72.7
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 4.3e-08 61.2 26 100.0
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 4.3e-08 61.2 49 59.2
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 7.4e-08 60.5 47 66.0
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 9.7e-08 60.1 28 89.3
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 9.7e-08 60.1 28 89.3
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 1.7e-07 59.3 42 64.3
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 2.2e-07 58.9 53 52.8
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 2.2e-07 58.9 27 88.9
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 2.8e-07 58.5 58 44.8
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 2.8e-07 58.5 25 96.0
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 2.8e-07 58.5 28 85.7
arahy.Tifrunner.gnm1.ann1.54ECHP Arachis hypogaea HOM05D005851 ORTHO05D007137 8.2e-07 57.0 41 80.5
arahy.Tifrunner.gnm1.ann1.CS7A8V Arachis hypogaea HOM05D005851 ORTHO05D007137 8.2e-07 57.0 41 80.5
arahy.Tifrunner.gnm1.ann1.IPBJ4Y Arachis hypogaea HOM05D005851 ORTHO05D007137 8.2e-07 57.0 41 80.5
arahy.Tifrunner.gnm1.ann1.Q2BFW3 Arachis hypogaea HOM05D005851 ORTHO05D007137 8.2e-07 57.0 41 80.5
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.4e-06 56.2 50 52.0
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.8e-06 55.8 36 86.1
arahy.Tifrunner.gnm1.ann1.6D2PAS Arachis hypogaea HOM05D005851 ORTHO05D007137 4.1e-06 54.7 41 78.0
Medtr5g011478 Medicago truncatula HOM05D005851 ORTHO05D007137 5.3e-06 54.3 41 73.2


User provided reference genes

Program Settings