Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 1.3e-28 129.0 63 100.0
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 7.9e-23 109.8 63 87.3
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 8.7e-22 106.3 56 91.1
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 5.3e-19 97.1 53 86.8
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 5.3e-19 97.1 53 86.8
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 1.3e-17 92.4 57 82.5
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 2.5e-16 88.2 53 84.9
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 4.2e-16 87.4 55 78.2
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 1.6e-15 85.5 63 69.8
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 3.6e-15 84.3 51 78.4
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 6.1e-15 83.6 58 74.1
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 6.1e-15 83.6 56 73.2
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 1.3e-14 82.4 60 70.0
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 1.3e-14 82.4 61 70.5
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 1.8e-14 82.0 57 71.9
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 1.8e-14 82.0 63 69.8
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 3.0e-14 81.3 56 75.0
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 3.0e-14 81.3 59 69.5
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 3.0e-14 81.3 58 72.4
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 3.9e-14 80.9 62 69.4
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 3.9e-14 80.9 63 68.3
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 5.1e-14 80.5 63 68.3
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 5.1e-14 80.5 63 68.3
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 6.7e-14 80.1 49 75.5
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 6.7e-14 80.1 48 79.2
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 6.7e-14 80.1 60 71.7
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 6.7e-14 80.1 52 73.1
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 6.7e-14 80.1 62 69.4
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 8.7e-14 79.7 55 78.2
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 8.7e-14 79.7 51 78.4
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 1.1e-13 79.3 51 74.5
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 1.1e-13 79.3 57 73.7
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 1.5e-13 79.0 57 71.9
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.5e-13 79.0 59 69.5
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 1.5e-13 79.0 59 67.8
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 1.5e-13 79.0 57 70.2
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 1.9e-13 78.6 57 71.9
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 3.3e-13 77.8 57 68.4
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 3.3e-13 77.8 63 63.5
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 4.3e-13 77.4 57 68.4
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 4.3e-13 77.4 51 74.5
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 4.3e-13 77.4 63 66.7
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 5.7e-13 77.0 51 72.5
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 5.7e-13 77.0 51 72.5
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 5.7e-13 77.0 57 68.4
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 5.7e-13 77.0 56 69.6
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 7.4e-13 76.6 63 63.5
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 7.4e-13 76.6 51 74.5
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 9.7e-13 76.3 57 66.7
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 9.7e-13 76.3 57 66.7
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 1.3e-12 75.9 56 67.9
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 1.6e-12 75.5 56 71.4
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 2.2e-12 75.1 58 63.8
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 2.2e-12 75.1 59 66.1
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 2.2e-12 75.1 59 66.1
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 2.2e-12 75.1 57 64.9
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 2.2e-12 75.1 57 64.9
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 2.2e-12 75.1 59 66.1
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 2.2e-12 75.1 45 82.2
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 3.7e-12 74.3 57 64.9
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 3.7e-12 74.3 57 64.9
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 3.7e-12 74.3 60 61.7
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 3.7e-12 74.3 63 63.5
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 4.8e-12 73.9 54 66.7
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 6.3e-12 73.6 46 78.3
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 6.3e-12 73.6 61 65.6
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 8.2e-12 73.2 58 63.8
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 8.2e-12 73.2 59 69.5
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 1.4e-11 72.4 58 63.8
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 2.4e-11 71.6 59 64.4
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 2.4e-11 71.6 56 62.5
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 2.4e-11 71.6 46 73.9
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 3.1e-11 71.2 41 80.5
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 5.3e-11 70.5 54 63.0
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 5.3e-11 70.5 54 63.0
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 6.9e-11 70.1 59 62.7
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 6.9e-11 70.1 56 66.1
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 9.1e-11 69.7 59 64.4
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 1.2e-10 69.3 75 53.3
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 5.9e-10 67.0 59 61.0
unitig_744.g24437 Utricularia gibba HOM05D007758 ORTHO05D009788 5.9e-10 67.0 95 45.3
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 1.0e-09 66.2 60 56.7
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.7e-09 65.5 54 64.8
Nitab4.5_0010949g0010 Nicotiana tabacum HOM05D007758 ORTHO05D009788 2.9e-09 64.7 41 75.6
RcHm_v2.0_Chr7g0207671 Rosa chinensis HOM05D007758 ORTHO05D009788 6.1e-07 57.0 56 57.1
BolC7t45365H Brassica oleracea HOM05D007758 ORTHO05D009788 2.3e-06 55.1 37 67.6


User provided reference genes

Program Settings