Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1040900 Malus domestica HOM05D008235 ORTHO05D009358 5.4e-259 897.1 450 100.0
Haze_01504 Corylus avellana HOM05D008235 ORTHO05D009358 5.0e-87 325.9 456 44.3
QL10p049494 Quercus lobata HOM05D008235 ORTHO05D009358 2.8e-82 310.1 458 44.8
CANSAT78G2326 Cannabis sativa HOM05D008235 ORTHO05D009358 2.3e-76 290.4 459 41.2
Thecc.04G179500 Theobroma cacao HOM05D008235 ORTHO05D009358 2.0e-59 234.2 464 37.9
Manes.04G042909 Manihot esculenta HOM05D008235 ORTHO05D009358 1.4e-57 228.0 466 36.9
Potri.017G029800 Populus trichocarpa HOM05D008235 ORTHO05D009358 3.2e-57 226.9 464 36.4
Potri.007G128500 Populus trichocarpa HOM05D008235 ORTHO05D009358 9.2e-57 225.3 464 37.5
Duzib212G0859 Durio zibethinus HOM05D008235 ORTHO05D009358 6.0e-56 222.6 462 34.8
TAR365G0029 Trochodendron aralioides HOM05D008235 ORTHO05D009358 1.8e-52 211.1 492 33.5
Gorai.011G142400 Gossypium raimondii HOM05D008235 ORTHO05D009358 2.3e-52 210.7 442 35.1
Actinidia35979 Actinidia chinensis HOM05D008235 ORTHO05D009358 1.3e-50 204.9 443 35.0
Actinidia34601 Actinidia chinensis HOM05D008235 ORTHO05D009358 2.9e-50 203.8 438 35.2
Sabra07G0105000 Salix brachista HOM05D008235 ORTHO05D009358 3.2e-49 200.3 486 34.6
CiPaw.01G099800 Carya illinoinensis HOM05D008235 ORTHO05D009358 7.8e-48 195.7 320 41.6
VMungo1127G1046 Vigna mungo HOM05D008235 ORTHO05D009358 1.5e-46 191.4 421 34.9
Ciclev10019428m.g Citrus clementina HOM05D008235 ORTHO05D009358 1.6e-45 188.0 462 32.5
Phvul.011G054200 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 1.6e-45 188.0 448 33.9
Manes.11G121000 Manihot esculenta HOM05D008235 ORTHO05D009358 2.1e-45 187.6 409 35.9
Glyma.12G052200 Glycine max HOM05D008235 ORTHO05D009358 3.6e-45 186.8 393 33.6
Dinv22732 Davidia involucrata HOM05D008235 ORTHO05D009358 8.1e-45 185.7 343 37.9
Sabra17G0019200 Salix brachista HOM05D008235 ORTHO05D009358 1.2e-43 181.8 422 34.1
Gohir.D02G114100 Gossypium hirsutum HOM05D008235 ORTHO05D009358 9.9e-43 178.7 445 33.5
Lj3g0014084 Lotus japonicus HOM05D008235 ORTHO05D009358 9.9e-43 178.7 434 34.6
CsaV3_4G003430 Cucumis sativus L. HOM05D008235 ORTHO05D009358 1.3e-42 178.3 409 35.7
Duzib268G0443 Durio zibethinus HOM05D008235 ORTHO05D009358 2.9e-42 177.2 354 35.3
CSS0022265 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 8.4e-42 175.6 467 33.6
Lalb_Chr22g0352131 Lupinus albus HOM05D008235 ORTHO05D009358 5.4e-41 172.9 448 32.8
Glyma.11G127600 Glycine max HOM05D008235 ORTHO05D009358 9.3e-41 172.2 393 32.6
Gorai.005G128900 Gossypium raimondii HOM05D008235 ORTHO05D009358 1.2e-40 171.8 444 32.7
MELO3C017713.2 Cucumis melo HOM05D008235 ORTHO05D009358 3.5e-40 170.2 410 35.4
Gohir.D10G129000 Gossypium hirsutum HOM05D008235 ORTHO05D009358 3.9e-39 166.8 337 34.4
Gohir.A10G137600 Gossypium hirsutum HOM05D008235 ORTHO05D009358 8.7e-39 165.6 340 35.3
Ca_20789_v3 Cicer arietinum L. HOM05D008235 ORTHO05D009358 9.6e-38 162.2 410 32.2
Gohir.A03G088800 Gossypium hirsutum HOM05D008235 ORTHO05D009358 9.6e-38 162.2 440 31.4
arahy.Tifrunner.gnm1.ann1.TK6P88 Arachis hypogaea HOM05D008235 ORTHO05D009358 2.8e-37 160.6 400 33.0
ClCG07G015680 Citrullus lanatus HOM05D008235 ORTHO05D009358 3.6e-37 160.2 408 33.8
Nn1g09629 Nelumbo nucifera HOM05D008235 ORTHO05D009358 4.0e-36 156.8 472 32.6
TAR636G0036 Trochodendron aralioides HOM05D008235 ORTHO05D009358 5.3e-36 156.4 394 31.0
COL.COLO4_07668 Corchorus olitorius HOM05D008235 ORTHO05D009358 6.9e-36 156.0 313 37.4
vmacro00622 Vaccinium macrocarpon HOM05D008235 ORTHO05D009358 1.2e-35 155.2 497 29.6
arahy.Tifrunner.gnm1.ann1.V6VI7P Arachis hypogaea HOM05D008235 ORTHO05D009358 3.4e-35 153.7 396 32.3
Dinv44188 Davidia involucrata HOM05D008235 ORTHO05D009358 5.8e-35 152.9 447 31.8
CSS0049607 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 9.9e-35 152.1 396 32.3
Sed0015774 Sechium edule HOM05D008235 ORTHO05D009358 3.8e-34 150.2 411 33.1
Cpa.g.sc9.283 Carica papaya HOM05D008235 ORTHO05D009358 4.3e-30 136.7 513 28.3
Glyma.13G344300 Glycine max HOM05D008235 ORTHO05D009358 1.8e-28 131.3 376 30.9
TPR.G34237 Trifolium pratense HOM05D008235 ORTHO05D009358 2.0e-27 127.9 402 31.3
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 4.5e-27 126.7 319 31.7
RhsimUnG0195000 Rhododendron simsii HOM05D008235 ORTHO05D009358 4.5e-27 126.7 319 31.7
GSVIVG01010760001 Vitis vinifera HOM05D008235 ORTHO05D009358 4.5e-27 126.7 406 30.8
Medtr4g067260 Medicago truncatula HOM05D008235 ORTHO05D009358 7.9e-24 115.9 418 28.9
PSO675G1581 Papaver somniferum HOM05D066249 ORTHO05D009358 3.7e-21 107.1 377 28.1
Psat7g208600 Pisum sativum HOM05D008235 ORTHO05D009358 9.0e-20 102.4 368 28.5
Oeu053824.1 Olea europaea HOM05D008235 ORTHO05D009358 3.4e-19 100.5 390 26.4
Eucgr.A00083 Eucalyptus grandis HOM05D008235 ORTHO05D009358 7.6e-19 99.4 324 29.6
PSO017G5357 Papaver somniferum HOM05D066249 ORTHO05D009358 1.3e-18 98.6 378 27.0
Aqoxy2G04121 Aquilegia oxysepala HOM05D008235 ORTHO05D009358 7.9e-16 89.4 454 27.3
Glyma.15G030050 Glycine max HOM05D008235 ORTHO05D009358 3.3e-14 84.0 165 37.6
Hund03161 Selenicereus undatus HOM05D019141 ORTHO05D009358 6.9e-12 76.3 291 28.2
THA.LOC104800392 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 9.0e-12 75.9 288 26.0
Peaxi162Scf01052g00325 Petunia axillaris HOM05D014650 ORTHO05D009358 3.4e-11 73.9 374 25.4
Cc03_g12910 Coffea canephora HOM05D008235 ORTHO05D009358 7.6e-11 72.8 385 25.7
THA.LOC104803712 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 8.4e-10 69.3 284 26.4
AL5G41340 Arabidopsis lyrata HOM05D009929 ORTHO05D009358 1.4e-09 68.6 261 28.0
EL10Ac3g05943 Beta vulgaris HOM05D019141 ORTHO05D009358 1.9e-09 68.2 291 27.5
Duzib151G0752 Durio zibethinus HOM05D008235 ORTHO05D009358 1.9e-09 68.2 139 40.3
AT3G59430 Arabidopsis thaliana HOM05D009929 ORTHO05D009358 7.1e-09 66.2 259 28.2
Carub.0005s2617 Capsella rubella HOM05D009929 ORTHO05D009358 3.5e-08 63.9 273 27.1
AUR62015381 Chenopodium quinoa HOM05D019141 ORTHO05D009358 7.9e-08 62.8 161 32.9
Solyc05g050740.3 Solanum lycopersicum HOM05D014650 ORTHO05D009358 7.9e-08 62.8 101 31.7
Phvul.005G153000 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 2.3e-07 61.2 91 39.6
Ah.13g072860 Amaranthus hybridus HOM05D019141 ORTHO05D009358 3.9e-07 60.5 321 25.9
Sc13g0006760 Simmondsia chinensis HOM05D008235 ORTHO05D009358 1.1e-06 58.9 292 25.3
AUR62002309 Chenopodium quinoa HOM05D019141 ORTHO05D009358 1.5e-06 58.5 294 26.9
Sopen05g029150 Solanum pennellii HOM05D014650 ORTHO05D022197 1.5e-06 58.5 101 30.7
ATR0824G133 Amborella trichopoda HOM05D008235 ORTHO05D009358 2.5e-06 57.8 129 33.3
Thhalv10005962m.g Eutrema salsugineum HOM05D009929 ORTHO05D009358 2.5e-06 57.8 243 28.8
Aa31LG1G25120 Aethionema arabicum HOM05D009929 ORTHO05D006942 5.7e-06 56.6 238 26.1


User provided reference genes

Program Settings