Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1040300 Malus domestica HOM05D006659 ORTHO05D008372 2.8e-138 495.4 264 100.0
Prupe.1G193000 Prunus persica HOM05D006659 ORTHO05D008372 5.5e-102 374.8 268 76.5
QL10p048762 Quercus lobata HOM05D006659 ORTHO05D008372 6.3e-82 308.1 266 65.8
TPR.G34236 Trifolium pratense HOM05D006659 ORTHO05D008372 2.4e-81 306.2 272 64.3
RcHm_v2.0_Chr4g0406801 Rosa chinensis HOM05D006659 ORTHO05D008372 1.2e-80 303.9 230 73.5
FvH4_4g10790 Fragaria vesca HOM05D006659 ORTHO05D008372 5.9e-80 301.6 227 71.8
FAN12G1956 Fragaria x ananassa HOM05D006659 ORTHO05D008372 7.7e-80 301.2 227 71.8
CiPaw.01G100500 Carya illinoinensis HOM05D006659 ORTHO05D008372 3.6e-77 292.4 269 60.2
FAN07G0020 Fragaria x ananassa HOM05D006659 ORTHO05D008372 4.7e-77 292.0 235 68.9
Medtr4g067150 Medicago truncatula HOM05D006659 ORTHO05D008372 6.1e-77 291.6 272 61.0
Lalb_Chr03g0026131 Lupinus albus HOM05D006659 ORTHO05D008372 4.4e-75 285.4 271 59.4
VMungo1127G1494 Vigna mungo HOM05D006659 ORTHO05D008372 3.7e-74 282.3 242 65.7
Oeu053837.1 Olea europaea HOM05D006659 ORTHO05D008372 1.4e-73 280.4 278 58.6
arahy.Tifrunner.gnm1.ann1.AVW0M7 Arachis hypogaea HOM05D006659 ORTHO05D008372 5.4e-73 278.5 257 59.9
Cpa.g.sc9.272 Carica papaya HOM05D006659 ORTHO05D008372 9.2e-73 277.7 201 70.1
Phvul.011G054500 Phaseolus vulgaris HOM05D006659 ORTHO05D008372 1.2e-72 277.3 241 63.1
arahy.Tifrunner.gnm1.ann1.Q6M2DC Arachis hypogaea HOM05D006659 ORTHO05D008372 2.7e-72 276.2 257 59.1
GSVIVG01010754001 Vitis vinifera HOM05D006659 ORTHO05D008372 3.5e-72 275.8 216 66.7
Haze_01513 Corylus avellana HOM05D006659 ORTHO05D008372 5.9e-72 275.0 237 63.3
Duzib151G0383 Durio zibethinus HOM05D006659 ORTHO05D008372 1.3e-71 273.9 269 56.1
MSTRG.24582 Avicennia marina HOM05D006659 ORTHO05D008372 2.3e-71 273.1 272 58.1
CSS0040017 Camellia sinensis var. sinensis HOM05D006659 ORTHO05D008372 3.0e-71 272.7 273 58.6
CSS0046315 Camellia sinensis var. sinensis HOM05D006659 ORTHO05D008372 1.5e-70 270.4 273 57.5
Psat7g214800 Pisum sativum HOM05D006659 ORTHO05D008372 1.5e-70 270.4 268 57.1
Dinv44193 Davidia involucrata HOM05D006659 ORTHO05D008372 2.5e-70 269.6 223 66.4
Thecc.04G179900 Theobroma cacao HOM05D006659 ORTHO05D008372 3.3e-70 269.2 201 68.2
Sabra17G0019600 Salix brachista HOM05D006659 ORTHO05D008372 5.6e-70 268.5 273 59.0
Potri.007G128200 Populus trichocarpa HOM05D006659 ORTHO05D008372 1.2e-69 267.3 268 58.6
Potri.017G030100 Populus trichocarpa HOM05D006659 ORTHO05D008372 3.6e-69 265.8 273 57.9
Nitab4.5_0008969g0010 Nicotiana tabacum HOM05D006659 ORTHO05D008372 4.7e-69 265.4 227 63.0
Rhsim09G0027800 Rhododendron simsii HOM05D006659 ORTHO05D008372 8.0e-69 264.6 229 63.8
TAR362G1327 Trochodendron aralioides HOM05D006659 ORTHO05D008372 1.8e-68 263.5 268 60.1
Cc03_g13110 Coffea canephora HOM05D006659 ORTHO05D008372 2.3e-68 263.1 272 57.7
Glyma.12G052500 Glycine max HOM05D006659 ORTHO05D008372 5.2e-68 261.9 269 57.2
RhsimUnG0221100 Rhododendron simsii HOM05D006659 ORTHO05D008372 6.8e-68 261.5 229 63.3
Lj3g0013401 Lotus japonicus HOM05D006659 ORTHO05D008372 8.9e-68 261.2 269 56.1
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 8.9e-68 261.2 239 62.8
Lalb_Chr01g0003161 Lupinus albus HOM05D006659 ORTHO05D008372 1.2e-67 260.8 268 56.3
COL.COLO4_07662 Corchorus olitorius HOM05D006659 ORTHO05D008372 5.8e-67 258.5 190 70.0
Lj6C54T1 Lonicera japonica HOM05D006659 ORTHO05D008372 9.8e-67 257.7 191 68.6
Dinv22730 Davidia involucrata HOM05D006659 ORTHO05D008372 1.7e-66 256.9 191 69.1
Sabra07G0104600 Salix brachista HOM05D006659 ORTHO05D008372 1.7e-66 256.9 265 57.4
Gohir.A10G137100 Gossypium hirsutum HOM05D006659 ORTHO05D008372 2.2e-66 256.5 195 68.2
Gohir.D10G129500 Gossypium hirsutum HOM05D006659 ORTHO05D008372 2.2e-66 256.5 195 68.2
Gorai.011G142800 Gossypium raimondii HOM05D006659 ORTHO05D008372 2.2e-66 256.5 195 68.2
Ca_20785_v3 Cicer arietinum L. HOM05D006659 ORTHO05D008372 4.9e-66 255.4 193 66.8
Gohir.D09G204400 Gossypium hirsutum HOM05D006659 ORTHO05D008372 4.9e-66 255.4 191 68.6
Solyc06g073290.1 Solanum lycopersicum HOM05D006659 ORTHO05D008372 4.9e-66 255.4 270 56.7
HanXRQChr01g0004971 Helianthus annuus HOM05D006659 ORTHO05D008372 6.4e-66 255.0 157 78.3
Gorai.006G228300 Gossypium raimondii HOM05D006659 ORTHO05D008372 8.3e-66 254.6 191 68.6
Aqoxy2G04093 Aquilegia oxysepala HOM05D006659 ORTHO05D008372 1.4e-65 253.8 202 66.8
PGSC0003DMG400027013 Solanum tuberosum HOM05D006659 ORTHO05D008372 1.9e-65 253.4 270 56.7
Actinidia35977 Actinidia chinensis HOM05D006659 ORTHO05D008372 2.4e-65 253.1 228 59.2
Manes.11G120400 Manihot esculenta HOM05D006659 ORTHO05D008372 3.2e-65 252.7 278 56.8
Ciclev10021505m.g Citrus clementina HOM05D006659 ORTHO05D008372 9.2e-65 251.1 196 65.3
CANSAT78G0008 Cannabis sativa HOM05D006659 ORTHO05D008372 1.2e-64 250.8 194 66.0
Duzib212G0569 Durio zibethinus HOM05D006659 ORTHO05D008372 1.6e-64 250.4 269 54.3
Gohir.A09G211000 Gossypium hirsutum HOM05D006659 ORTHO05D008372 1.6e-64 250.4 251 58.6
PSO675G8713 Papaver somniferum HOM05D006659 ORTHO05D008372 1.6e-64 250.4 244 58.2
Sopen06g029650 Solanum pennellii HOM05D006659 ORTHO05D008372 1.6e-64 250.4 275 56.7
ECA248G3871 Erigeron canadensis HOM05D006659 ORTHO05D008372 2.7e-64 249.6 245 59.2
Atru.chr3.1492 Acer truncatum HOM05D006659 ORTHO05D008372 3.5e-64 249.2 243 58.4
ClCG08G004640 Citrullus lanatus HOM05D006659 ORTHO05D008372 6.0e-64 248.4 241 58.5
Sed0004224 Sechium edule HOM05D006659 ORTHO05D008372 1.0e-63 247.7 267 53.6
THA.LOC104802307 Tarenaya hassleriana HOM05D006659 ORTHO05D008372 3.9e-63 245.7 242 56.2
unitig_578.g16263 Utricularia gibba HOM05D006659 ORTHO05D008372 8.6e-63 244.6 187 67.9
TWI14G0225 Tripterygium wilfordii HOM05D006659 ORTHO05D008372 1.5e-62 243.8 248 58.1
TWI39G0181 Tripterygium wilfordii HOM05D006659 ORTHO05D008372 1.5e-62 243.8 248 58.1
Lsat_1_v5_gn_1_120661 Lactuca sativa HOM05D006659 ORTHO05D008372 1.9e-62 243.4 266 54.5
PSO017G5731 Papaver somniferum HOM05D006659 ORTHO05D008372 1.9e-62 243.4 247 56.3
MELO3C011657.2 Cucumis melo HOM05D006659 ORTHO05D008372 2.5e-62 243.0 203 62.1
Migut.N03108 Erythranthe guttata HOM05D006659 ORTHO05D008372 2.5e-62 243.0 171 71.9
PGR083G0301 Punica granatum HOM05D006659 ORTHO05D008372 3.3e-62 242.7 279 53.8
CAN.G65.172 Capsicum annuum HOM05D006659 ORTHO05D008372 1.2e-61 240.7 241 58.9
CsaV3_6G003920 Cucumis sativus L. HOM05D006659 ORTHO05D008372 1.2e-61 240.7 262 53.1
THA.LOC104803695 Tarenaya hassleriana HOM05D006659 ORTHO05D008372 1.2e-61 240.7 197 62.4
ATR0824G177 Amborella trichopoda HOM05D006659 ORTHO05D008372 2.8e-61 239.6 198 62.6
Cfa015167 Carpinus fangiana HOM05D006659 ORTHO05D008372 4.7e-61 238.8 178 69.1
AL5G41300 Arabidopsis lyrata HOM05D006659 ORTHO05D008372 8.1e-61 238.0 198 62.1
A09p51640 Brassica napus HOM05D006659 ORTHO05D008372 1.1e-60 237.7 239 59.0
AT3G59400 Arabidopsis thaliana HOM05D006659 ORTHO05D008372 1.5e-59 233.8 193 62.7
Carub.0005s2614 Capsella rubella HOM05D006659 ORTHO05D008372 4.4e-59 232.3 193 62.2
Sed0027988 Sechium edule HOM05D006659 ORTHO05D008372 9.8e-59 231.1 238 55.9
BraA09t40604Z Brassica rapa HOM05D006659 ORTHO05D008372 2.2e-58 229.9 239 56.9
Aa31LG10G13750 Aethionema arabicum HOM05D006659 ORTHO05D008372 4.9e-58 228.8 264 53.8
Thhalv10006183m.g Eutrema salsugineum HOM05D006659 ORTHO05D008372 4.9e-58 228.8 201 60.2
BcaC07g40279 Brassica carinata HOM05D006659 ORTHO05D008372 6.4e-58 228.4 239 56.5
C08p34410 Brassica napus HOM05D006659 ORTHO05D008372 6.4e-58 228.4 239 56.5
BolC8t51042H Brassica oleracea HOM05D006659 ORTHO05D008372 6.4e-58 228.4 239 56.5
BcaC07g40458 Brassica carinata HOM05D006659 ORTHO05D008372 1.9e-57 226.9 240 54.2
Os11g0267000 Oryza sativa ssp. japonica HOM05D006659 ORTHO05D008372 2.4e-57 226.5 198 59.6
BolC6t37777H Brassica oleracea HOM05D006659 ORTHO05D008372 4.1e-57 225.7 261 51.7
BcaC08g44982 Brassica carinata HOM05D006659 ORTHO05D008372 5.4e-57 225.3 261 51.3
EL10Ac3g05931 Beta vulgaris HOM05D006659 ORTHO05D008372 9.2e-57 224.6 241 54.4
Zm00001eb406810 Zea mays HOM05D006659 ORTHO05D008372 1.2e-56 224.2 194 59.8
C06p26120 Brassica napus HOM05D006659 ORTHO05D008372 1.6e-56 223.8 261 51.3
A07p24640 Brassica napus HOM05D006659 ORTHO05D008372 2.1e-56 223.4 261 52.5
BraA07t30109Z Brassica rapa HOM05D006659 ORTHO05D008372 3.5e-56 222.6 261 50.6
Glyma.11G127800 Glycine max HOM05D006659 ORTHO05D008372 3.5e-56 222.6 222 57.7
CARHR169790 Cardamine hirsuta HOM05D006659 ORTHO05D008372 6.0e-56 221.9 239 52.7
SalBow6G0037 Salvia bowleyana HOM05D006659 ORTHO05D008372 1.3e-55 220.7 224 54.0
BcaB02g07470 Brassica carinata HOM05D006659 ORTHO05D008372 1.7e-55 220.3 260 51.2
Ah.07g201990 Amaranthus hybridus HOM05D006659 ORTHO05D008372 3.9e-55 219.2 223 54.7
Manes.04G042918 Manihot esculenta HOM05D006659 ORTHO05D008372 8.6e-55 218.0 251 53.8
Sp5g03740 Schrenkiella parvula HOM05D006659 ORTHO05D008372 3.3e-54 216.1 261 49.0
SGA_v2.0_scaffold31G12575 Striga asiatica HOM05D006659 ORTHO05D008372 2.8e-53 213.0 224 52.7
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 1.2e-51 207.6 211 54.5
SEGI_36451 Sequoiadendron giganteum HOM05D006659 ORTHO05D008372 6.4e-50 201.8 154 61.7
VMungo1309G1939 Vigna mungo HOM05D006659 ORTHO05D008372 2.3e-47 193.4 243 50.6
AagrBONN_evm.TU.Sc2ySwM_228.5135 Anthoceros agrestis HOM05D006659 ORTHO05D008372 9.6e-46 188.0 179 52.5
Pp3c25_4400 Physcomitrium patens HOM05D006659 ORTHO05D008372 3.8e-42 176.0 164 53.7
SMO170G0079 Selaginella moellendorffii HOM05D006659 ORTHO05D008372 8.4e-42 174.9 159 54.1
Pp3c6_11210 Physcomitrium patens HOM05D006659 ORTHO05D008372 2.1e-40 170.2 187 48.1
Mapoly0173s0019 Marchantia polymorpha HOM05D006659 ORTHO05D008372 1.3e-39 167.5 176 49.4
Peaxi162Scf00413g00827 Petunia axillaris HOM05D006659 ORTHO05D008372 3.3e-38 162.9 242 46.3
CDE04G1206 Ceratophyllum demersum HOM05D006659 ORTHO05D008372 1.1e-36 157.9 141 56.7
Cre05.g246800 Chlamydomonas reinhardtii HOM05D006659 ORTHO05D008372 1.5e-35 154.1 170 49.4
CBR_g10809 Chara braunii HOM05D006659 ORTHO05D008372 4.9e-34 149.1 174 47.1
Oeu053835.1 Olea europaea HOM05D006659 ORTHO05D008372 1.6e-29 134.0 119 63.0
MCO04G521 Micromonas commoda HOM05D006659 ORTHO05D008372 2.8e-29 133.3 215 40.0
PRCOL_00006170 Prasinoderma coloniale HOM05D006659 ORTHO05D008372 8.1e-29 131.7 166 41.0
Eucgr.H00371 Eucalyptus grandis HOM05D006659 ORTHO05D008372 9.6e-22 108.2 109 56.9


User provided reference genes

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