Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 6.5e-173 610.5 287 100.0
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 1.4e-146 523.1 274 89.8
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 3.5e-134 481.9 274 82.8
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 2.0e-129 466.1 268 81.0
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 2.4e-127 459.1 266 78.9
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 1.0e-125 453.8 266 77.8
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 2.8e-123 445.7 266 76.3
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 1.1e-122 443.7 272 75.4
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 6.8e-122 441.0 272 74.3
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 2.6e-121 439.1 264 76.5
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 3.7e-120 435.3 269 73.2
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 6.4e-120 434.5 266 74.4
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 7.0e-119 431.0 274 72.3
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 2.7e-118 429.1 270 74.8
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 3.5e-118 428.7 272 72.1
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 3.5e-118 428.7 266 71.8
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 3.5e-118 428.7 266 71.8
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 3.5e-118 428.7 272 72.4
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 7.8e-118 427.6 269 71.4
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 2.3e-117 426.0 266 71.4
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 3.0e-117 425.6 269 72.5
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 6.6e-117 424.5 270 72.2
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 1.5e-116 423.3 274 70.1
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 4.3e-116 421.8 263 73.4
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 7.3e-116 421.0 265 73.2
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.6e-115 419.9 272 69.5
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.6e-115 419.9 272 69.5
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 1.1e-114 417.2 278 69.4
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 1.4e-114 416.8 273 69.6
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 2.3e-114 416.0 272 70.6
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 8.9e-114 414.1 266 71.1
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 1.5e-113 413.3 270 71.9
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 3.4e-113 412.1 262 71.8
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 1.3e-112 410.2 268 69.0
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 1.7e-112 409.8 269 72.1
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.7e-112 409.8 245 75.9
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 4.9e-112 408.3 272 68.4
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 6.4e-112 407.9 259 71.0
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 1.1e-111 407.1 270 68.9
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 1.1e-111 407.1 272 69.9
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 1.4e-111 406.8 270 69.6
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 4.1e-111 405.2 265 69.1
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 5.4e-111 404.8 270 68.9
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 5.4e-111 404.8 267 67.4
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 7.1e-111 404.4 263 69.6
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 7.1e-111 404.4 258 69.8
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 9.2e-111 404.1 266 69.2
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 2.7e-110 402.5 273 67.4
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 4.6e-110 401.7 250 71.6
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 6.0e-110 401.4 272 68.4
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 6.0e-110 401.4 247 72.5
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 7.8e-110 401.0 250 71.6
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 1.3e-109 400.2 250 71.6
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 1.7e-109 399.8 264 68.9
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 2.3e-109 399.4 265 68.3
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 3.9e-109 398.7 267 67.0
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 5.1e-109 398.3 286 65.7
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 9.5e-108 394.0 262 68.7
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 6.2e-107 391.3 260 68.5
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 8.1e-107 391.0 265 65.7
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 1.1e-106 390.6 265 67.5
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 4.0e-106 388.7 280 63.6
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 1.5e-105 386.7 260 66.5
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 4.4e-105 385.2 265 66.0
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 1.3e-104 383.6 257 67.7
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 6.0e-102 374.8 252 68.3
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 7.8e-102 374.4 259 64.9
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 1.3e-101 373.6 266 63.5
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 6.6e-101 371.3 283 60.8
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 1.9e-100 369.8 244 68.9
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 3.3e-100 369.0 262 66.0
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 8.1e-99 364.4 286 61.5
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 5.3e-98 361.7 248 65.7
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 4.9e-96 355.1 253 62.5
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 3.2e-95 352.4 256 66.0
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 3.5e-94 349.0 248 67.3
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 3.5e-94 349.0 256 64.8
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 2.3e-93 346.3 248 66.9
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 2.5e-92 342.8 221 69.2
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 1.2e-89 334.0 235 64.7
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 2.2e-88 329.7 235 62.6
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 7.1e-87 324.7 235 63.4
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 4.8e-83 312.0 193 71.5
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 1.1e-82 310.8 233 61.4
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 1.1e-79 300.8 193 68.9
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 1.2e-78 297.4 174 76.4
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 1.1e-76 290.8 267 53.6
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 3.3e-76 289.3 235 56.2
AUR62002299 Chenopodium quinoa HOM05D006283 ORTHO05D007727 2.8e-75 286.2 183 69.4
Glyma.12G052600 Glycine max HOM05D006283 ORTHO05D007727 5.8e-73 278.5 196 68.4
SMO119G0098 Selaginella moellendorffii HOM05D006283 ORTHO05D007727 9.3e-71 271.2 234 49.1
QL10p048744 Quercus lobata HOM05D006283 ORTHO05D007727 4.6e-70 268.9 155 78.7
Mapoly0093s0081 Marchantia polymorpha HOM05D006283 ORTHO05D007727 5.1e-69 265.4 234 48.3
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 3.7e-59 232.6 150 74.0
RcHm_v2.0_Chr4g0406831 Rosa chinensis HOM05D006283 ORTHO05D007727 7.7e-57 224.9 159 69.8
Lj3A196G22 Lonicera japonica HOM05D006283 ORTHO05D007727 2.9e-56 223.0 135 69.6
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 6.1e-54 215.3 141 73.8
FAN12G0556 Fragaria x ananassa HOM05D006283 ORTHO05D007727 1.4e-50 204.1 129 69.8
SEGI_31631 Sequoiadendron giganteum HOM05D006283 ORTHO05D007727 2.4e-50 203.4 161 54.7
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 4.5e-49 199.1 137 66.4
Hma1.2p1_0639F.1_g194055 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 5.9e-49 198.7 131 74.0
Hma1.2p1_0847F.1_g227840 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 5.9e-49 198.7 131 74.0
QL10p048749 Quercus lobata HOM05D006283 ORTHO05D007727 6.5e-48 195.3 111 80.2
Prupe.1G193700 Prunus persica HOM05D006283 ORTHO05D007727 8.0e-46 188.3 105 83.8
vmacro00624 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 3.2e-39 166.4 130 60.8
Cre16.g673841 Chlamydomonas reinhardtii HOM05D006283 ORTHO05D007727 1.2e-33 147.9 243 32.5
ClCG07G015660 Citrullus lanatus HOM05D006283 ORTHO05D007727 1.9e-31 140.6 258 37.6
Psat7g091240 Pisum sativum HOM05D006283 ORTHO05D007727 3.4e-28 129.8 175 44.0
RcHm_v2.0_Chr4g0406821 Rosa chinensis HOM05D006283 ORTHO05D007727 8.3e-27 125.2 69 82.6
Lj3A196T13 Lonicera japonica HOM05D006283 ORTHO05D007727 8.6e-24 115.2 94 58.5
Peaxi162Scf00126g00003 Petunia axillaris HOM05D006283 ORTHO05D007727 8.6e-24 115.2 103 54.4
HanXRQChr16g0525261 Helianthus annuus HOM05D006283 ORTHO05D007727 1.8e-18 97.4 67 65.7
vmacro00625 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 9.2e-18 95.1 51 82.4
Hma1.2p1_0639F.1_g194050 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 3.9e-16 89.7 43 93.0
Hma1.2p1_0847F.1_g227839 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 3.9e-16 89.7 43 93.0
PRCOL_00001858 Prasinoderma coloniale HOM05D006283 ORTHO05D007727 2.9e-11 73.6 146 30.8
Os11g0267100 Oryza sativa ssp. japonica HOM05D006283 ORTHO05D007727 3.7e-11 73.2 55 52.7
Cfa015166 Carpinus fangiana HOM05D006283 ORTHO05D007727 9.2e-10 68.6 39 76.9
C09p49630 Brassica napus HOM05D006283 ORTHO05D007727 1.3e-08 64.7 53 50.9
BolC3t18408H Brassica oleracea HOM05D006283 ORTHO05D007727 2.3e-08 63.9 47 55.3
CSS0010514 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.1e-07 61.6 36 72.2
CSS0034877 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.1e-07 61.6 36 72.2
CSS0022675 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.9e-07 60.8 31 87.1
CSS0026672 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.9e-07 60.8 31 87.1
Ah.07g201980 Amaranthus hybridus HOM05D006283 ORTHO05D007727 4.7e-06 56.2 36 63.9
BcaC02g08202 Brassica carinata HOM05D000127 ORTHO05D000243 4.7e-06 56.2 37 56.8


User provided reference genes

Program Settings