Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 1.3e-150 536.6 302 100.0
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 2.4e-109 399.4 305 74.1
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 1.6e-97 360.1 302 69.9
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 8.5e-91 337.8 302 62.9
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 4.2e-90 335.5 297 61.3
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 2.1e-89 333.2 299 62.2
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 3.6e-89 332.4 302 62.3
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 2.3e-88 329.7 316 60.4
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 2.0e-87 326.6 291 64.9
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 2.7e-84 316.2 297 62.6
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 4.5e-84 315.5 295 63.1
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 1.3e-83 313.9 295 64.1
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 2.3e-83 313.2 278 63.3
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 1.1e-82 310.8 296 59.8
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 1.1e-82 310.8 301 57.1
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 2.5e-82 309.7 305 58.4
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 1.2e-81 307.4 210 71.4
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 1.6e-81 307.0 227 68.3
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 3.6e-81 305.8 210 71.4
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 6.1e-81 305.1 233 66.5
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 3.0e-80 302.8 210 71.0
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 4.4e-79 298.9 302 58.6
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 5.7e-79 298.5 202 76.2
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 1.7e-78 297.0 219 69.9
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 2.9e-78 296.2 292 61.3
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 3.7e-78 295.8 235 61.3
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 4.9e-78 295.4 265 60.4
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 6.4e-78 295.0 222 64.0
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 6.4e-78 295.0 222 64.4
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 6.4e-78 295.0 240 65.8
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 1.1e-77 294.3 303 54.8
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 1.4e-77 293.9 228 67.1
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 1.8e-77 293.5 241 64.7
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 2.4e-77 293.1 214 68.7
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 3.2e-77 292.7 235 60.9
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 3.2e-77 292.7 235 60.9
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 9.2e-77 291.2 207 70.5
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 1.6e-76 290.4 214 69.2
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 2.0e-76 290.0 217 64.1
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 2.0e-76 290.0 293 57.3
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 5.9e-76 288.5 227 63.4
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 7.8e-76 288.1 298 55.4
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 3.9e-75 285.8 298 54.4
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 6.6e-75 285.0 300 56.0
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.1e-74 284.3 300 56.0
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 1.9e-74 283.5 219 66.7
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 2.5e-74 283.1 217 66.8
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 4.3e-74 282.3 210 66.2
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 5.6e-74 282.0 226 61.5
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 1.2e-73 280.8 209 67.9
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 1.6e-73 280.4 238 59.2
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 1.6e-73 280.4 220 65.9
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 4.7e-73 278.9 291 55.7
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 4.7e-73 278.9 206 64.6
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 6.2e-73 278.5 238 58.8
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 6.2e-73 278.5 219 64.8
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 8.0e-73 278.1 218 66.1
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 3.1e-72 276.2 209 66.5
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 4.0e-72 275.8 297 51.5
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 6.8e-72 275.0 238 57.1
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 2.6e-71 273.1 295 53.2
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 2.6e-71 273.1 223 63.7
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 3.4e-71 272.7 261 57.1
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 5.8e-71 271.9 296 50.7
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 7.5e-71 271.6 290 53.1
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 2.9e-70 269.6 220 63.6
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 4.9e-70 268.9 299 51.8
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 4.9e-70 268.9 215 60.9
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 1.1e-69 267.7 215 62.8
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 1.4e-69 267.3 200 67.0
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 3.2e-69 266.2 214 65.9
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 9.2e-69 264.6 221 60.6
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 9.2e-69 264.6 235 60.9
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 6.0e-68 261.9 218 63.3
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 1.7e-67 260.4 208 63.9
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 1.7e-67 260.4 209 60.3
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 6.6e-67 258.5 258 60.1
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 8.6e-67 258.1 173 72.8
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 8.6e-67 258.1 177 75.1
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 4.3e-66 255.8 221 58.8
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 5.6e-66 255.4 210 62.9
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 1.6e-65 253.8 204 63.2
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 8.1e-65 251.5 206 61.2
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 6.8e-64 248.4 224 57.1
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 2.6e-63 246.5 204 74.5
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 2.6e-63 246.5 201 62.7
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 7.5e-63 245.0 188 65.4
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 1.3e-62 244.2 184 65.2
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 2.9e-62 243.0 186 68.8
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 5.4e-61 238.8 181 66.3
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 3.5e-60 236.1 167 70.1
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 2.3e-59 233.4 186 62.9
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 1.1e-58 231.1 174 66.7
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 1.5e-58 230.7 216 54.6
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 4.7e-57 225.7 175 66.9
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 4.9e-54 215.7 234 53.0
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 4.1e-53 212.6 206 54.4
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 8.1e-49 198.4 222 47.3
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 8.1e-49 198.4 172 57.0
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 3.8e-46 189.5 203 49.8
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.4e-45 187.6 136 70.6
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 4.2e-45 186.0 164 59.1
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 4.6e-44 182.6 124 72.6
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 1.3e-43 181.0 208 45.7
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 5.1e-43 179.1 326 41.7
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 1.3e-41 174.5 210 51.4
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 2.1e-41 173.7 229 40.6
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 9.9e-39 164.9 352 38.6
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 2.2e-38 163.7 219 44.3
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 1.9e-37 160.6 94 80.9
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 1.9e-37 160.6 93 83.9
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 4.2e-37 159.5 93 83.9
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 1.7e-35 154.1 129 62.8
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 6.6e-35 152.1 195 43.1
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 8.1e-33 145.2 179 48.6
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.2e-31 141.4 165 43.0
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 8.4e-30 135.2 219 38.4
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 2.7e-28 130.2 179 59.2
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 3.9e-27 126.3 93 68.8
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 1.1e-24 118.2 213 37.6
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 1.8e-24 117.5 227 44.1
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 3.1e-16 90.1 60 71.7
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 9.3e-13 78.6 182 33.5
SEGI_30148 Sequoiadendron giganteum HOM05D006222 ORTHO05D007677 3.4e-07 60.1 51 54.9
A03p23980 Brassica napus HOM05D006222 ORTHO05D007677 1.3e-06 58.2 50 54.0


User provided reference genes

Program Settings