Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1032500 Malus domestica HOM05D005970 ORTHO05D007146 5.6e-308 1060.1 522 100.0
Prupe.1G181900 Prunus persica HOM05D005970 ORTHO05D007146 6.8e-253 877.1 492 86.6
RcHm_v2.0_Chr4g0408981 Rosa chinensis HOM05D005970 ORTHO05D007146 5.1e-216 754.6 494 76.3
FvH4_4g11690 Fragaria vesca HOM05D005970 ORTHO05D007146 4.0e-213 745.0 495 75.8
FAN12G0387 Fragaria x ananassa HOM05D005970 ORTHO05D007146 6.0e-209 731.1 510 73.5
Dinv22666 Davidia involucrata HOM05D005970 ORTHO05D007146 6.0e-201 704.5 496 68.8
CANSAT80G1971 Cannabis sativa HOM05D005970 ORTHO05D007146 3.7e-190 668.7 499 63.9
CsaV3_6G003170 Cucumis sativus L. HOM05D005970 ORTHO05D007146 1.4e-189 666.8 492 65.9
CSS0014236 Camellia sinensis var. sinensis HOM05D005970 ORTHO05D007146 6.9e-189 664.5 493 64.5
Aqoxy2G04048 Aquilegia oxysepala HOM05D005970 ORTHO05D007146 1.5e-188 663.3 490 64.5
TAR362G0058 Trochodendron aralioides HOM05D005970 ORTHO05D007146 2.2e-187 659.4 504 65.1
Atru.chr3.1658_Atru.chr3.1659 Acer truncatum HOM05D005970 ORTHO05D007146 1.1e-186 657.1 501 63.7
MELO3C011504.2 Cucumis melo HOM05D005970 ORTHO05D007146 1.4e-186 656.8 494 65.4
Actinidia32934 Actinidia chinensis HOM05D005970 ORTHO05D007146 5.5e-186 654.8 493 65.1
Eucgr.A00211 Eucalyptus grandis HOM05D005970 ORTHO05D007146 6.7e-184 647.9 494 64.6
MBI08_g17320_MAGBIO Magnolia biondii HOM05D005970 ORTHO05D007146 1.3e-182 643.7 491 64.2
PGR083G2204 Punica granatum HOM05D005970 ORTHO05D007146 1.5e-180 636.7 499 63.3
Lj5g0014069 Lotus japonicus HOM05D005970 ORTHO05D007146 1.1e-178 630.6 498 62.0
Potri.014G150800 Populus trichocarpa HOM05D005970 ORTHO05D007146 3.1e-173 612.5 496 62.3
Ciclev10023314m.g Citrus clementina HOM05D005970 ORTHO05D007146 6.9e-173 611.3 501 58.7
arahy.Tifrunner.gnm1.ann1.ILR90A Arachis hypogaea HOM05D005970 ORTHO05D007146 2.9e-171 605.9 493 61.3
Ca_11416_v3 Cicer arietinum L. HOM05D005970 ORTHO05D007146 6.5e-171 604.7 497 60.4
Hma1.2p1_1477F.1_g285890 Hydrangea macrophylla HOM05D005970 ORTHO05D007146 1.1e-170 604.0 440 67.5
COL.COLO4_24350 Corchorus olitorius HOM05D005970 ORTHO05D007146 1.4e-170 603.6 491 60.1
AL1G15700 Arabidopsis lyrata HOM05D005970 ORTHO05D007146 2.5e-170 602.8 495 61.2
QL10p046561 Quercus lobata HOM05D005970 ORTHO05D007146 2.5e-170 602.8 573 56.2
AT1G05790 Arabidopsis thaliana HOM05D005970 ORTHO05D007146 7.2e-170 601.3 495 61.2
Lalb_Chr06g0164591 Lupinus albus HOM05D005970 ORTHO05D007146 2.7e-169 599.4 501 59.9
Gorai.005G017800 Gossypium raimondii HOM05D005970 ORTHO05D007146 6.1e-169 598.2 502 58.6
THA.LOC104800916 Tarenaya hassleriana HOM05D005970 ORTHO05D007146 6.1e-169 598.2 490 60.8
arahy.Tifrunner.gnm1.ann1.R0ZLJW Arachis hypogaea HOM05D005970 ORTHO05D007146 1.0e-168 597.4 505 59.8
GSVIVG01013548001 Vitis vinifera HOM05D005970 ORTHO05D007146 1.4e-168 597.0 411 70.3
VMungo0720G0532 Vigna mungo HOM05D005970 ORTHO05D007146 3.0e-168 595.9 495 60.8
Duzib151G0884 Durio zibethinus HOM05D005970 ORTHO05D007146 3.9e-168 595.5 486 61.9
Thhalv10006938m.g Eutrema salsugineum HOM05D005970 ORTHO05D007146 3.9e-168 595.5 495 61.4
A08p36290 Brassica napus HOM05D005970 ORTHO05D007146 5.1e-168 595.1 495 60.8
BraA08t35533Z Brassica rapa HOM05D005970 ORTHO05D007146 5.1e-168 595.1 495 60.8
Gohir.A02G013401 Gossypium hirsutum HOM05D005970 ORTHO05D007146 5.1e-168 595.1 502 58.8
Medtr1g116780 Medicago truncatula HOM05D005970 ORTHO05D007146 5.1e-168 595.1 499 59.7
Ah.12g062330 Amaranthus hybridus HOM05D005970 ORTHO05D007146 8.8e-168 594.3 500 59.0
Carub.0001s0513 Capsella rubella HOM05D005970 ORTHO05D007146 4.8e-166 588.6 495 60.8
Sc22g0002260 Simmondsia chinensis HOM05D005970 ORTHO05D007146 8.2e-166 587.8 496 60.1
Sp1g04590 Schrenkiella parvula HOM05D005970 ORTHO05D007146 3.1e-165 585.9 495 60.2
Aa31LG1G8570 Aethionema arabicum HOM05D005970 ORTHO05D007146 6.9e-165 584.7 491 59.9
BolC8t47015H Brassica oleracea HOM05D005970 ORTHO05D007146 6.9e-165 584.7 495 60.6
TPR.G8892 Trifolium pratense HOM05D005970 ORTHO05D007146 9.1e-165 584.3 497 57.9
Nitab4.5_0002313g0060 Nicotiana tabacum HOM05D005970 ORTHO05D007146 1.0e-163 580.9 499 58.3
C08p02230 Brassica napus HOM05D005970 ORTHO05D007146 1.3e-163 580.5 495 60.4
A10p04500 Brassica napus HOM05D005970 ORTHO05D007146 5.0e-163 578.6 496 59.3
Rhsim09G0037500 Rhododendron simsii HOM05D005970 ORTHO05D007146 5.0e-163 578.6 631 50.1
Sopen09g036380 Solanum pennellii HOM05D005970 ORTHO05D007146 8.5e-163 577.8 498 58.0
Nitab4.5_0001049g0010 Nicotiana tabacum HOM05D005970 ORTHO05D007146 4.2e-162 575.5 497 57.9
Solyc09g098450.4 Solanum lycopersicum HOM05D005970 ORTHO05D007146 2.7e-161 572.8 498 57.4
FAN12G1273 Fragaria x ananassa HOM05D005970 ORTHO05D007146 3.6e-161 572.4 329 83.9
Peaxi162Scf00286g00235 Petunia axillaris HOM05D005970 ORTHO05D007146 4.7e-161 572.0 485 58.8
Psat6g242520 Pisum sativum HOM05D005970 ORTHO05D007146 6.1e-161 571.6 497 57.1
HPP92_001247 Vanilla planifolia HOM05D005970 ORTHO05D007146 3.0e-160 569.3 499 57.5
ATR0618G312 Amborella trichopoda HOM05D005970 ORTHO05D007146 3.9e-160 568.9 526 57.0
CAN.G710.55 Capsicum annuum HOM05D005970 ORTHO05D007146 5.7e-159 565.1 502 57.4
FAN07G1016 Fragaria x ananassa HOM05D005970 ORTHO05D007146 1.3e-158 563.9 329 83.0
HPP92_001263 Vanilla planifolia HOM05D005970 ORTHO05D007146 8.2e-158 561.2 498 57.0
BraA10t42716Z Brassica rapa HOM05D005970 ORTHO05D007146 3.1e-157 559.3 502 57.8
Glyma.20G248000 Glycine max HOM05D005970 ORTHO05D007146 7.0e-157 558.1 495 57.0
Sabra14G0114200 Salix brachista HOM05D005970 ORTHO05D007146 1.2e-153 547.4 654 48.0
Zm00001eb425400 Zea mays HOM05D005970 ORTHO05D007146 1.2e-153 547.4 489 56.6
HanXRQChr17g0557031 Helianthus annuus HOM05D005970 ORTHO05D007146 8.0e-153 544.7 547 51.0
HPP92_002722 Vanilla planifolia HOM05D005970 ORTHO05D007146 2.3e-152 543.1 504 56.0
C05p04110 Brassica napus HOM05D005970 ORTHO05D007146 1.8e-149 533.5 476 56.5
Os04g0489100 Oryza sativa ssp. japonica HOM05D005970 ORTHO05D007146 7.0e-149 531.6 513 53.6
CiPaw.01G106400 Carya illinoinensis HOM05D005970 ORTHO05D007146 1.6e-148 530.4 335 73.7
Sed0012260 Sechium edule HOM05D005970 ORTHO05D007146 2.5e-146 523.1 331 74.6
Lj3A262T16 Lonicera japonica HOM05D005970 ORTHO05D007146 1.2e-145 520.8 360 70.6
ECA234G4469 Erigeron canadensis HOM05D005970 ORTHO05D007146 1.8e-144 516.9 431 58.5
BolC5t29189H Brassica oleracea HOM05D005970 ORTHO05D007146 1.5e-143 513.8 495 54.5
Thecc.04G181600 Theobroma cacao HOM05D005970 ORTHO05D007146 1.7e-139 500.4 326 73.9
Gohir.D02G014300 Gossypium hirsutum HOM05D005970 ORTHO05D007146 1.2e-137 494.2 344 67.7
AUR62042870 Chenopodium quinoa HOM05D005970 ORTHO05D007146 6.1e-137 491.9 530 49.6
Lsat_1_v5_gn_4_37800 Lactuca sativa HOM05D005970 ORTHO05D007146 6.3e-134 481.9 387 59.7
vmacro00562 Vaccinium macrocarpon HOM05D005970 ORTHO05D007146 1.4e-125 454.1 530 46.0
Sabra02G0176700 Salix brachista HOM05D005970 ORTHO05D007146 9.2e-125 451.4 501 51.3
Haze_11055 Corylus avellana HOM05D005970 ORTHO05D007146 3.3e-122 443.0 461 54.0
Mapoly0123s0015 Marchantia polymorpha HOM05D005970 ORTHO05D007146 1.4e-117 427.6 429 51.5
Cpa.g.sc164.4 Carica papaya HOM05D005970 ORTHO05D007146 9.5e-114 414.8 311 64.0
AagrBONN_evm.TU.Sc2ySwM_368.857 Anthoceros agrestis HOM05D005970 ORTHO05D007146 1.2e-111 407.9 515 45.0
SMO336G0028 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 2.3e-107 393.7 405 49.1
Cc00_g08710 Coffea canephora HOM05D005970 ORTHO05D007146 6.6e-107 392.1 375 54.9
SMO337G0034 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 1.2e-105 387.9 412 47.8
SMO337G0042 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 2.1e-105 387.1 509 43.8
ClCG08G003970 Citrullus lanatus HOM05D005970 ORTHO05D007146 1.2e-103 381.3 246 77.2
AagrBONN_evm.TU.Sc2ySwM_368.849 Anthoceros agrestis HOM05D005970 ORTHO05D007146 1.9e-101 374.0 387 50.4
Phvul.007G002300 Phaseolus vulgaris HOM05D005970 ORTHO05D007146 7.3e-98 362.1 235 74.0
CDE09G0649 Ceratophyllum demersum HOM05D005970 ORTHO05D007146 7.1e-93 345.5 497 40.6
CBR_g2768 Chara braunii HOM05D005970 ORTHO05D007146 1.0e-91 341.7 536 39.6
Nn1g09815 Nelumbo nucifera HOM05D005970 ORTHO05D007146 4.3e-90 336.3 226 67.7
Pp3c6_14360 Physcomitrium patens HOM05D005970 ORTHO05D007146 2.2e-86 323.9 517 38.9
Pp3c5_12210 Physcomitrium patens HOM05D005970 ORTHO05D007146 8.7e-83 312.0 422 44.1
Nn1g09841 Nelumbo nucifera HOM05D005970 ORTHO05D007146 6.9e-64 249.2 175 71.4
DCAR_028456 Daucus carota HOM05D005970 ORTHO05D007146 5.9e-55 219.5 189 58.2
CAN.G959.7 Capsicum annuum HOM05D005970 ORTHO05D007146 7.2e-53 212.6 204 52.9
Potri.002G231501 Populus trichocarpa HOM05D005970 ORTHO05D007146 6.7e-51 206.1 155 62.6
Manes.04G050700 Manihot esculenta HOM05D005970 ORTHO05D007146 1.8e-48 198.0 144 71.5
Potri.002G231534 Populus trichocarpa HOM05D005970 ORTHO05D007146 2.5e-45 187.6 132 71.2
CARHR005310 Cardamine hirsuta HOM05D005970 ORTHO05D007146 4.8e-41 173.3 140 67.1
FAN07G1785 Fragaria x ananassa HOM05D005970 ORTHO05D007146 1.1e-34 152.1 130 63.1
Peaxi162Scf00286g00234 Petunia axillaris HOM05D005970 ORTHO05D007146 5.3e-32 143.3 119 53.8
SMO001G0011 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 9.4e-29 132.5 174 44.8
Glyma.10G297100 Glycine max HOM05D005970 ORTHO05D007146 4.0e-27 127.1 105 63.8
GSVIVG01013576001 Vitis vinifera HOM05D005970 ORTHO05D007146 5.9e-23 113.2 59 79.7
DCAR_028457 Daucus carota HOM05D005970 ORTHO05D007146 7.2e-21 106.3 70 75.7
FAN12G1094 Fragaria x ananassa HOM05D005970 ORTHO05D007146 1.4e-16 92.0 96 56.2
ClCG08G004000 Citrullus lanatus HOM05D005970 ORTHO05D007146 3.1e-16 90.9 123 41.5
FAN17G2889 Fragaria x ananassa HOM05D002213 ORTHO05D002297 4.1e-16 90.5 95 55.8
Potri.002G231567 Populus trichocarpa HOM05D005970 ORTHO05D007146 5.2e-11 73.6 52 73.1
vmacro00561 Vaccinium macrocarpon HOM05D005970 ORTHO05D007146 3.4e-10 70.9 54 68.5
Atru.chr9.1613 Acer truncatum HOM05D005970 ORTHO05D010500 4.4e-10 70.5 56 64.3
Cpa.g.sc164.8 Carica papaya HOM05D005970 ORTHO05D007146 4.9e-09 67.0 80 51.2
Haze_11058 Corylus avellana HOM05D005970 ORTHO05D007146 1.4e-08 65.5 41 73.2
Os01g0900200 Oryza sativa ssp. japonica HOM05D005970 ORTHO05D007146 1.8e-08 65.1 66 51.5
Zm00001eb144480 Zea mays HOM05D005970 ORTHO05D007146 1.2e-07 62.4 47 63.8
ClCG08G003980 Citrullus lanatus HOM05D005970 ORTHO05D007146 4.6e-07 60.5 133 31.6
Lj3A252T11 Lonicera japonica HOM05D005970 ORTHO05D007146 4.6e-07 60.5 35 80.0
Nn1g09816 Nelumbo nucifera HOM05D005970 ORTHO05D007146 3.9e-06 57.4 95 38.9
Pp3c22_2890 Physcomitrium patens HOM05D004750 ORTHO05D006207 6.6e-06 56.6 130 36.2
Potri.002G231450 Populus trichocarpa HOM05D005970 ORTHO05D007146 6.6e-06 56.6 80 40.0


User provided reference genes

Program Settings