Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 4.8e-191 671.0 338 100.0
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 1.2e-186 656.4 338 97.3
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 1.5e-181 639.4 332 95.8
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 1.0e-180 636.7 336 94.0
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 1.4e-179 632.9 338 92.6
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 2.5e-179 632.1 338 92.9
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 2.7e-178 628.6 338 92.0
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 3.5e-178 628.2 338 91.4
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 1.0e-177 626.7 339 91.4
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.8e-177 625.9 331 93.7
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 1.8e-177 625.9 338 91.4
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 3.9e-177 624.8 338 90.8
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 3.9e-177 624.8 339 92.3
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 3.9e-177 624.8 338 92.0
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 5.1e-177 624.4 338 91.4
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 6.7e-177 624.0 336 91.4
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 1.5e-176 622.9 338 90.8
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.5e-176 622.9 338 90.2
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.9e-176 622.5 338 90.2
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.5e-176 622.1 339 90.9
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 3.3e-176 621.7 339 91.7
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 5.7e-176 620.9 338 90.2
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 7.4e-176 620.5 338 90.5
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 7.4e-176 620.5 339 91.2
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 9.6e-176 620.2 338 90.5
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 9.6e-176 620.2 338 90.8
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 1.6e-175 619.4 333 91.6
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 2.1e-175 619.0 338 90.2
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 3.7e-175 618.2 338 89.9
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 3.7e-175 618.2 333 91.0
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 8.2e-175 617.1 335 91.6
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 8.2e-175 617.1 338 90.8
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 1.1e-174 616.7 338 89.9
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 1.4e-174 616.3 338 89.9
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 1.4e-174 616.3 339 91.2
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.4e-174 616.3 339 91.2
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 1.8e-174 615.9 338 90.8
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 2.4e-174 615.5 335 91.3
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.4e-174 615.5 335 91.3
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 2.4e-174 615.5 338 90.5
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 3.1e-174 615.1 338 88.8
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 3.1e-174 615.1 339 90.9
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 4.1e-174 614.8 338 90.2
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 6.9e-174 614.0 336 90.8
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 6.9e-174 614.0 338 88.5
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 1.2e-173 613.2 339 89.1
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.2e-173 613.2 333 90.7
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.2e-173 613.2 338 88.5
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 2.0e-173 612.5 338 89.6
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.0e-173 612.5 339 89.7
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 2.0e-173 612.5 339 90.6
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.6e-173 612.1 336 90.8
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 3.4e-173 611.7 337 89.6
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 3.4e-173 611.7 337 90.2
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 4.5e-173 611.3 335 90.1
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 5.9e-173 610.9 338 88.8
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 5.9e-173 610.9 334 90.7
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 5.9e-173 610.9 337 90.2
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 7.6e-173 610.5 333 91.3
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.0e-172 610.1 338 89.1
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.0e-172 610.1 338 89.1
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.0e-172 610.1 338 89.1
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 1.0e-172 610.1 335 89.9
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 1.0e-172 610.1 340 88.8
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 1.3e-172 609.8 338 90.5
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 2.9e-172 608.6 338 89.1
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 5.0e-172 607.8 322 93.5
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 5.0e-172 607.8 338 88.2
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 8.4e-172 607.1 333 89.5
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 1.1e-171 606.7 332 89.2
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 1.4e-171 606.3 338 88.2
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.2e-171 605.1 333 89.2
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 7.2e-171 604.0 336 88.4
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 9.3e-171 603.6 333 88.9
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 4.6e-170 601.3 334 89.5
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 1.3e-169 599.7 334 88.0
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 3.9e-169 598.2 338 87.0
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 6.7e-169 597.4 339 87.3
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.5e-168 596.3 327 90.5
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 4.3e-168 594.7 353 85.3
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 9.7e-168 593.6 380 80.3
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 4.8e-167 591.3 333 86.8
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 1.2e-165 586.6 334 86.5
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 1.2e-165 586.6 334 86.5
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 1.5e-165 586.3 317 91.2
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 2.6e-165 585.5 334 86.2
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 3.4e-165 585.1 334 85.9
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 3.4e-165 585.1 333 85.6
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 4.5e-165 584.7 338 83.1
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 4.5e-165 584.7 338 87.6
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 7.7e-165 583.9 334 85.6
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 7.7e-165 583.9 330 87.6
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 1.0e-164 583.6 334 85.3
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 1.0e-164 583.6 334 85.9
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 1.3e-164 583.2 339 85.5
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 1.7e-164 582.8 334 85.3
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 2.2e-164 582.4 334 85.9
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 2.2e-164 582.4 334 85.6
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 2.2e-164 582.4 334 85.6
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 2.9e-164 582.0 334 85.3
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 5.0e-164 581.3 334 85.6
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 5.0e-164 581.3 334 85.3
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 8.5e-164 580.5 309 91.9
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 8.5e-164 580.5 316 91.1
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 1.4e-163 579.7 334 85.0
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 3.2e-163 578.6 319 90.0
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 5.5e-163 577.8 334 85.0
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 5.5e-163 577.8 327 85.6
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 5.5e-163 577.8 334 85.0
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 9.4e-163 577.0 309 90.9
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 6.1e-162 574.3 336 83.0
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 7.9e-162 573.9 349 81.9
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 7.9e-162 573.9 334 84.7
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 3.9e-161 571.6 319 87.8
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.6e-160 568.9 339 85.3
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 3.3e-160 568.5 338 81.4
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 4.8e-159 564.7 339 81.1
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 1.3e-156 556.6 338 83.1
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 6.5e-156 554.3 335 77.6
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 1.9e-155 552.7 337 77.7
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 3.2e-155 552.0 381 77.2
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 1.2e-154 550.1 336 78.6
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 1.8e-153 546.2 315 85.1
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 7.4e-152 540.8 418 69.9
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.7e-151 539.7 337 76.9
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 8.2e-151 537.3 337 76.6
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 9.4e-147 523.9 360 75.3
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 2.2e-143 512.7 338 79.9
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 5.3e-142 508.1 263 96.2
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 2.7e-141 505.8 292 84.9
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 7.7e-141 504.2 271 91.1
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 5.0e-140 501.5 263 94.7
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 5.0e-140 501.5 263 94.7
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 8.8e-137 490.7 320 73.4
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 7.7e-133 477.6 338 74.0
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 5.0e-132 474.9 338 73.7
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 3.0e-121 439.1 238 89.5
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 6.8e-121 438.0 343 65.9
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 6.4e-119 431.4 251 82.5
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 2.5e-115 419.5 251 82.1
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 3.1e-113 412.5 311 62.7
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 1.3e-111 407.1 244 79.9
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 1.1e-107 394.0 216 88.0
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 2.4e-102 376.3 329 58.4
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 1.0e-100 370.9 317 56.2
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 2.9e-55 219.9 128 84.4
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 9.4e-46 188.3 168 60.7
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 5.7e-35 152.5 180 53.3
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 8.5e-31 138.7 79 83.5
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 3.6e-29 133.3 80 80.0
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 4.4e-27 126.3 73 83.6
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 9.7e-27 125.2 74 79.7
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 2.7e-21 107.1 109 57.8
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 2.0e-16 90.9 51 86.3
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 5.5e-14 82.8 136 40.4
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 4.0e-12 76.6 97 49.5
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 6.8e-12 75.9 42 83.3
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 4.9e-10 69.7 100 42.0
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 8.3e-10 68.9 60 61.7
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 8.3e-10 68.9 60 61.7
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 5.0e-07 59.7 125 36.0


User provided reference genes

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