Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 0.0e+00 1463.7 743 100.0
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 2.3e-238 829.3 675 66.4
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 6.3e-228 794.7 767 57.6
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 8.5e-225 784.3 767 57.4
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 2.3e-222 776.2 765 57.3
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 5.0e-209 731.9 752 55.5
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 8.3e-204 714.5 767 54.4
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 7.2e-200 701.4 790 52.7
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 2.3e-198 696.4 747 52.5
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 5.6e-176 622.1 745 49.5
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 2.6e-173 613.2 746 48.9
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 2.9e-172 609.8 789 46.0
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 2.1e-162 577.0 682 48.7
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 6.0e-162 575.5 741 47.0
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 4.0e-158 562.8 744 45.2
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.2e-157 561.2 740 44.1
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 3.2e-155 553.1 740 43.2
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 1.7e-153 547.4 741 42.2
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 3.0e-153 546.6 738 43.4
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 3.6e-151 539.7 757 43.9
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 3.6e-151 539.7 704 44.5
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 9.0e-150 535.0 744 43.4
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 4.9e-148 529.3 785 41.4
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 6.4e-148 528.9 755 43.8
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 1.9e-147 527.3 764 41.1
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 2.1e-146 523.9 780 42.7
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 1.8e-145 520.8 789 41.7
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 2.3e-145 520.4 763 42.5
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 3.0e-145 520.0 867 37.6
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 5.1e-145 519.2 676 46.0
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 2.5e-144 516.9 742 41.1
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 8.1e-143 511.9 734 41.3
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.8e-142 510.8 736 42.9
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 3.4e-141 506.5 739 39.8
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 1.0e-137 495.0 738 42.1
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 1.0e-137 495.0 762 40.2
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 6.7e-137 492.3 703 45.0
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 6.2e-135 485.7 913 37.0
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 6.2e-135 485.7 739 42.2
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 2.4e-134 483.8 791 38.2
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 1.5e-133 481.1 739 41.0
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.7e-132 477.6 745 40.4
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 2.5e-131 473.8 702 40.5
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 3.2e-131 473.4 762 39.8
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 1.6e-130 471.1 703 41.4
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 1.3e-127 461.5 819 38.9
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 8.2e-127 458.8 744 41.3
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 3.4e-125 453.4 722 41.3
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.3e-123 445.3 753 40.2
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 2.1e-122 444.1 728 38.6
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 3.1e-118 430.3 848 36.4
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 5.9e-117 426.0 456 51.8
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 7.7e-117 425.6 619 43.6
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 1.0e-116 425.2 633 40.8
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.7e-116 424.5 803 37.0
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.7e-116 424.5 797 37.3
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 4.2e-115 419.9 735 39.7
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 2.0e-112 411.0 728 37.2
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 2.8e-111 407.1 755 36.0
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 1.4e-107 394.8 741 35.5
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.4e-107 394.8 425 46.8
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 1.4e-107 394.8 740 37.8
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 4.7e-106 389.8 675 36.7
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 5.2e-105 386.3 795 36.2
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 5.3e-102 376.3 752 36.4
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 3.2e-99 367.1 806 35.5
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.6e-98 364.8 760 35.5
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 3.3e-96 357.1 733 35.7
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 3.3e-96 357.1 744 35.1
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 9.7e-96 355.5 743 35.3
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 2.2e-95 354.4 736 34.5
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 6.3e-95 352.8 818 33.7
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 1.1e-94 352.1 737 34.9
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 1.4e-94 351.7 737 34.6
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 1.6e-93 348.2 736 33.8
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 3.5e-93 347.1 737 35.0
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 4.5e-93 346.7 273 64.8
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 1.0e-92 345.5 741 34.3
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 1.7e-92 344.7 736 34.6
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 2.5e-91 340.9 740 34.5
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 2.1e-90 337.8 829 32.6
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 2.3e-89 334.3 756 34.4
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 4.0e-89 333.6 726 32.9
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 4.0e-89 333.6 735 33.5
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 4.4e-88 330.1 453 42.2
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.4e-86 324.3 315 53.0
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 7.7e-85 319.3 312 52.6
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.5e-83 315.1 323 51.4
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.5e-83 313.2 310 52.3
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 6.1e-82 309.7 307 55.7
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 6.1e-82 309.7 380 44.7
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 5.2e-81 306.6 836 29.7
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.4e-80 303.5 731 31.5
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 1.3e-79 302.0 323 50.2
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 7.0e-78 296.2 822 31.5
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 9.2e-78 295.8 738 32.4
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.7e-77 294.3 310 51.6
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 2.9e-76 290.8 743 31.2
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 1.6e-74 285.0 666 33.5
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.6e-74 285.0 303 50.5
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 8.9e-73 279.3 385 42.6
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 1.5e-72 278.5 489 37.0
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.5e-72 278.5 775 30.8
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 7.5e-72 276.2 973 27.9
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 9.8e-72 275.8 733 31.9
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.3e-71 275.4 333 46.5
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.9e-71 273.5 745 31.3
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 1.1e-70 272.3 402 40.3
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 1.8e-70 271.6 369 42.3
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 5.4e-70 270.0 746 31.0
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 2.3e-68 264.6 308 49.7
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.0e-68 264.2 284 50.7
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.5e-67 261.2 265 51.7
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 4.3e-67 260.4 283 48.1
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 1.2e-61 242.3 776 29.9
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.9e-60 237.3 220 54.5
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 1.1e-59 235.7 747 30.7
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 9.5e-59 232.6 663 31.8
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.6e-58 231.9 367 40.9
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 4.7e-58 230.3 270 48.9
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.9e-55 221.1 292 46.6
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 6.4e-55 219.9 740 28.5
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 5.4e-54 216.9 293 44.7
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 5.4e-54 216.9 219 52.5
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 6.8e-49 199.9 287 44.3
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 5.8e-48 196.8 611 29.8
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 9.6e-43 179.5 297 38.0
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.7e-42 177.2 188 50.0
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.7e-42 177.2 188 50.0
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 1.2e-37 162.5 183 47.5
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 6.0e-37 160.2 129 61.2
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 6.0e-37 160.2 572 26.7
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 4.8e-34 150.6 228 40.8
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 1.7e-31 142.1 171 45.0
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 6.4e-31 140.2 189 43.4
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 1.9e-30 138.7 389 30.6
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 4.2e-30 137.5 171 43.9
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 4.2e-30 137.5 227 37.0
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 2.1e-29 135.2 189 42.3
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 2.7e-29 134.8 192 40.6
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.7e-29 134.8 102 65.7
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 2.7e-29 134.8 311 28.6
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 3.5e-29 134.4 171 43.3
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 2.1e-26 125.2 150 44.0
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 1.1e-25 122.9 132 52.3
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 4.0e-25 120.9 129 46.5
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 2.9e-23 114.8 172 40.7
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 4.9e-23 114.0 131 47.3
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 2.7e-21 108.2 123 42.3
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 3.3e-19 101.3 198 34.3
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 5.6e-19 100.5 127 44.1
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 3.8e-15 87.8 141 38.3
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 8.4e-15 86.7 194 33.5
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 1.9e-11 75.5 314 26.1
MBI08_g23496_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 2.0e-08 65.5 47 66.0
SEGI_15340 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.0e-07 63.2 104 37.5
QL93p0319_0003 Quercus lobata HOM05D000002 ORTHO05D000001 1.3e-07 62.8 45 68.9
Medtr2g098740 Medicago truncatula HOM05D004076 ORTHO05D004606 3.8e-07 61.2 60 53.3
BcaC07g42098 Brassica carinata HOM05D004076 ORTHO05D004606 8.5e-07 60.1 79 41.8
Medtr2g098780 Medicago truncatula HOM05D004076 ORTHO05D004606 1.1e-06 59.7 60 53.3
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 3.2e-06 58.2 130 27.7
Migut.C00084 Erythranthe guttata HOM05D042229 ORTHO05D035173 4.2e-06 57.8 66 37.9
Migut.E00887 Erythranthe guttata HOM05D042229 ORTHO05D035173 5.5e-06 57.4 60 45.0
Lj8A15T43 Lonicera japonica HOM05D004076 ORTHO05D004606 9.4e-06 56.6 104 37.5


User provided reference genes

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