Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 9.1e-150 533.9 337 100.0
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 1.5e-120 436.8 332 84.6
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 2.0e-96 356.7 331 62.8
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 7.5e-96 354.8 322 68.3
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 2.4e-94 349.7 327 66.1
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 3.2e-94 349.4 326 66.3
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 4.6e-93 345.5 328 63.7
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 4.6e-93 345.5 329 68.4
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 7.8e-93 344.7 329 68.7
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 7.8e-93 344.7 323 72.8
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 1.0e-92 344.4 323 70.9
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 1.0e-92 344.4 326 65.6
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 3.9e-92 342.4 331 64.0
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 5.6e-91 338.6 327 70.3
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 5.6e-91 338.6 326 69.0
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 2.1e-90 336.7 326 69.0
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 2.8e-90 336.3 329 64.4
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 1.8e-89 333.6 323 61.9
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 1.8e-89 333.6 324 65.4
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 2.3e-89 333.2 326 64.1
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 2.3e-89 333.2 324 65.7
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 2.6e-88 329.7 327 59.0
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 4.4e-88 328.9 326 62.6
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 4.4e-88 328.9 326 61.7
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 9.9e-88 327.8 326 63.5
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 1.3e-87 327.4 326 64.7
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 1.7e-87 327.0 342 59.1
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 4.9e-87 325.5 326 68.1
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 6.4e-87 325.1 332 61.4
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 1.4e-86 323.9 326 62.3
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 1.2e-85 320.9 326 63.5
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 4.6e-85 318.9 342 58.5
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 7.8e-85 318.2 327 61.2
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 1.3e-84 317.4 322 64.3
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 1.7e-84 317.0 323 66.3
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 2.3e-84 316.6 334 60.2
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 2.3e-84 316.6 326 67.5
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 3.0e-84 316.2 327 61.5
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 3.0e-84 316.2 317 61.5
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 3.9e-84 315.8 323 67.5
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 1.1e-83 314.3 328 67.4
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 1.1e-83 314.3 328 67.4
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 1.1e-83 314.3 327 60.2
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 2.5e-83 313.2 330 60.6
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 7.3e-83 311.6 338 63.9
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 9.6e-83 311.2 317 62.1
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 2.8e-82 309.7 325 66.8
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 4.7e-82 308.9 330 62.1
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.1e-81 307.8 330 60.0
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 1.4e-81 307.4 316 62.7
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 3.1e-81 306.2 326 59.5
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 6.8e-81 305.1 323 60.1
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 8.9e-81 304.7 330 59.7
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 8.9e-81 304.7 330 59.7
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 1.2e-80 304.3 326 62.6
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 2.0e-80 303.5 326 61.7
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 2.0e-80 303.5 354 52.5
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 2.6e-80 303.1 326 60.7
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 2.6e-80 303.1 317 65.3
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 3.4e-80 302.8 325 58.8
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 4.4e-80 302.4 326 68.1
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 4.4e-80 302.4 326 68.1
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 5.8e-80 302.0 326 61.3
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 9.9e-80 301.2 324 63.9
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 1.7e-79 300.4 321 61.4
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 2.9e-79 299.7 317 61.5
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 3.8e-79 299.3 326 67.5
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 4.9e-79 298.9 323 59.8
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 4.9e-79 298.9 326 60.4
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 8.4e-79 298.1 326 60.4
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 1.4e-78 297.4 326 60.7
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 2.4e-78 296.6 315 61.3
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 3.2e-78 296.2 331 60.7
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 1.6e-77 293.9 319 64.9
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 1.0e-76 291.2 333 55.3
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 1.0e-76 291.2 327 63.3
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 1.3e-76 290.8 327 63.3
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 5.1e-76 288.9 353 50.4
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 3.3e-75 286.2 326 58.6
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 9.6e-75 284.6 352 50.3
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 9.6e-75 284.6 315 63.5
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 2.8e-74 283.1 327 56.9
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 4.8e-74 282.3 326 56.7
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 4.8e-74 282.3 329 55.3
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 8.1e-74 281.6 321 52.3
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 2.4e-73 280.0 329 54.4
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 3.1e-73 279.6 341 46.0
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.6e-72 276.6 324 55.9
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 4.9e-71 272.3 315 57.1
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 3.2e-70 269.6 302 62.9
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 3.2e-70 269.6 334 51.8
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 7.1e-70 268.5 324 56.8
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 1.0e-68 264.6 324 63.0
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 5.8e-64 248.8 320 61.9
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 4.6e-61 239.2 279 62.4
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 4.3e-59 232.6 323 54.5
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 7.6e-56 221.9 325 50.8
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 1.2e-53 214.5 310 50.3
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 1.6e-50 204.1 200 51.5
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 9.0e-49 198.4 196 51.5
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 3.4e-48 196.4 172 54.1
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 1.0e-47 194.9 200 59.0
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 1.3e-47 194.5 166 55.4
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 9.3e-46 188.3 200 49.0
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 1.0e-44 184.9 165 55.2
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 1.3e-42 177.9 166 54.2
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 2.2e-42 177.2 253 40.7
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 1.1e-41 174.9 166 56.0
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.4e-41 173.7 168 50.6
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 4.5e-40 169.5 173 49.1
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 1.7e-39 167.5 166 64.5
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 2.2e-39 167.2 138 55.8
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 1.6e-37 161.0 210 69.0
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 4.1e-33 146.4 332 44.9
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 4.5e-32 142.9 164 47.0
Duzib151G0649 Durio zibethinus HOM05D005795 ORTHO05D007200 3.3e-27 126.7 107 59.8
Eucgr.L02278 Eucalyptus grandis HOM05D005795 ORTHO05D007200 1.1e-25 121.7 103 51.5
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 5.3e-25 119.4 82 70.7
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 1.7e-23 114.4 173 44.5
SHI30240 Sapria himalayana HOM05D005795 ORTHO05D007200 6.5e-23 112.5 69 75.4
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 9.4e-22 108.6 78 66.7
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 6.3e-18 95.9 99 44.4
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 3.5e-16 90.1 264 43.6
A05p02150 Brassica napus HOM05D005795 ORTHO05D007200 5.0e-15 86.3 59 62.7
Cpa.g.sc41.23 Carica papaya HOM05D005795 ORTHO05D007200 1.1e-14 85.1 59 61.0
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.3e-12 77.4 359 25.6
Gohir.A10G135766 Gossypium hirsutum HOM05D005795 ORTHO05D007200 2.2e-10 70.9 60 58.3
Cpa.g.sc41.24 Carica papaya HOM05D005795 ORTHO05D007200 2.7e-08 63.9 121 33.9
Rhsim12G0155600 Rhododendron simsii HOM05D005795 ORTHO05D007200 3.8e-07 60.1 39 69.2
Rhsim05G0171500 Rhododendron simsii HOM05D005795 ORTHO05D007200 1.5e-06 58.2 39 66.7


User provided reference genes

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