Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 2.6e-206 721.8 376 100.0
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 1.1e-193 679.9 376 94.9
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 1.1e-193 679.9 376 94.9
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 1.0e-170 603.6 376 84.0
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 4.5e-150 535.0 378 73.5
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 6.6e-149 531.2 378 73.0
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 6.6e-149 531.2 377 73.7
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.6e-142 510.0 374 70.3
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 5.2e-138 495.0 419 64.9
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 4.3e-132 475.3 339 73.5
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 3.7e-128 462.2 367 65.1
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 3.0e-125 452.6 378 63.8
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 6.6e-125 451.4 370 63.8
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.0e-117 427.6 367 59.9
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 4.3e-116 422.2 367 60.8
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.8e-114 416.8 377 58.9
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 4.0e-114 415.6 367 61.6
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 4.4e-113 412.1 377 58.6
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 1.3e-112 410.6 381 59.1
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.9e-111 406.8 367 58.3
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.4e-111 406.4 362 58.8
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 4.2e-111 405.6 372 59.9
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 9.3e-111 404.4 367 57.8
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 1.2e-110 404.1 379 58.6
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.8e-110 401.4 362 58.0
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.0e-109 399.4 362 57.5
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 6.6e-109 398.3 374 60.2
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 2.5e-108 396.4 378 58.7
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 4.3e-108 395.6 371 58.8
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 4.3e-108 395.6 376 59.6
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.1e-107 393.3 367 56.7
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 2.8e-107 392.9 380 59.5
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 2.8e-107 392.9 377 58.6
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.1e-107 391.3 367 56.9
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 1.1e-106 391.0 371 58.2
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.8e-106 390.2 365 58.1
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 3.1e-106 389.4 375 55.7
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 2.6e-105 386.3 379 55.9
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 1.3e-104 384.0 371 59.6
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 3.2e-103 379.4 352 58.2
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 4.2e-103 379.0 377 55.7
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 5.4e-103 378.6 367 55.3
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 5.4e-103 378.6 376 57.4
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 9.3e-103 377.9 357 57.4
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.6e-102 377.1 367 55.0
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 2.3e-101 373.2 370 54.6
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 3.9e-101 372.5 374 55.6
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 8.7e-101 371.3 356 57.3
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 1.5e-100 370.5 370 54.3
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 3.1e-98 362.8 370 55.9
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 5.3e-98 362.1 370 55.9
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 4.5e-97 359.0 320 61.9
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 1.7e-96 357.1 329 58.4
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 6.4e-96 355.1 370 53.5
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.4e-95 354.0 321 60.1
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.4e-95 354.0 357 55.5
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 5.5e-95 352.1 369 52.3
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 6.0e-94 348.6 370 52.2
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 6.0e-94 348.6 366 54.1
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 6.0e-94 348.6 364 55.8
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 8.7e-93 344.7 370 52.4
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.5e-92 344.0 337 55.2
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 1.3e-91 340.9 354 52.5
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 2.1e-91 340.1 373 51.5
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 3.7e-91 339.3 354 52.0
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 6.2e-91 338.6 370 52.4
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 6.2e-91 338.6 370 52.4
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 6.2e-91 338.6 373 49.9
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 1.4e-90 337.4 368 51.1
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.4e-90 337.4 382 51.3
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.4e-90 337.4 370 51.9
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 2.4e-90 336.7 370 52.4
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 3.1e-90 336.3 383 50.4
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.5e-89 334.0 371 52.6
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.5e-89 334.0 371 52.6
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.5e-89 334.0 374 51.6
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 2.0e-89 333.6 370 51.1
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 7.6e-89 331.6 330 55.5
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 1.3e-88 330.9 368 50.0
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 1.7e-88 330.5 324 56.5
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 2.2e-88 330.1 368 51.1
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 2.9e-88 329.7 369 50.7
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 4.9e-88 328.9 349 53.3
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 6.5e-88 328.6 368 50.5
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 6.5e-88 328.6 354 51.7
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 6.5e-88 328.6 376 50.3
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 1.9e-87 327.0 372 50.3
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 1.9e-87 327.0 356 52.0
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 2.5e-87 326.6 368 50.5
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 3.2e-87 326.2 368 50.8
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 4.2e-87 325.9 368 50.5
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 2.7e-86 323.2 369 50.7
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 2.7e-86 323.2 355 53.0
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 4.6e-86 322.4 385 51.2
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 3.0e-85 319.7 357 50.7
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 3.0e-85 319.7 371 52.3
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 8.7e-85 318.2 312 54.8
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 1.9e-84 317.0 369 49.6
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 3.3e-84 316.2 369 49.6
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 3.3e-84 316.2 369 49.6
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 5.7e-84 315.5 378 50.3
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 2.1e-83 313.5 373 48.5
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 8.2e-83 311.6 369 49.3
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 1.4e-82 310.8 370 49.5
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 1.8e-82 310.5 369 49.3
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 1.8e-82 310.5 369 49.3
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.1e-82 309.7 373 50.4
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 2.6e-81 306.6 369 49.9
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.2e-80 303.5 363 49.0
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 5.0e-80 302.4 381 48.3
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 8.4e-80 301.6 372 48.9
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 8.4e-80 301.6 367 45.5
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.9e-79 300.4 400 48.2
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 4.2e-79 299.3 311 52.4
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 2.1e-78 297.0 371 48.2
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 1.8e-77 293.9 370 47.3
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 1.4e-74 284.3 334 50.6
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 4.5e-73 279.3 292 52.7
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.6e-70 269.6 372 44.4
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.8e-69 267.3 331 48.3
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 3.0e-69 266.5 358 43.0
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.0e-68 263.8 348 45.1
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.1e-66 256.5 371 42.3
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 1.9e-63 247.3 349 41.8
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 7.2e-63 245.4 282 47.9
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 7.9e-62 241.9 333 44.1
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 2.5e-55 220.3 385 38.7
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.3e-53 213.8 281 44.1
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 2.2e-51 207.2 332 40.4
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 8.2e-51 205.3 195 56.4
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 4.0e-37 159.8 130 67.7
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 4.9e-35 152.9 131 67.2
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.3e-31 139.0 137 49.6
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.1e-30 137.5 139 47.5
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 4.7e-30 136.3 394 31.7
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.3e-27 128.3 157 45.9
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.7e-27 127.9 131 48.9
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 3.7e-27 126.7 259 35.1
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 6.4e-27 125.9 126 49.2
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 3.0e-24 117.1 372 26.3
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 6.6e-24 115.9 199 37.7
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 4.3e-23 113.2 400 29.5
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 2.8e-22 110.5 102 54.9
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.4e-21 108.2 379 26.4
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 3.1e-21 107.1 379 28.5
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 4.0e-21 106.7 245 31.8
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.0e-17 94.4 139 36.0
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 1.4e-13 81.6 98 49.0
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 3.4e-12 77.0 64 57.8
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 9.8e-12 75.5 82 45.1
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.6e-09 68.2 65 47.7
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.6e-09 68.2 65 47.7
Cre17.g708350 Chlamydomonas reinhardtii HOM05D002428 ORTHO05D005085 5.1e-08 63.2 355 23.4
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 8.1e-06 55.8 65 46.2


User provided reference genes

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