Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 1.2e-203 713.0 376 100.0
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 1.2e-203 713.0 376 100.0
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 1.3e-192 676.4 376 94.9
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 5.2e-170 601.3 376 85.1
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.7e-149 533.1 378 74.6
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 2.5e-148 529.3 378 74.1
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 2.1e-147 526.2 377 74.0
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.8e-143 513.1 374 71.9
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.0e-137 493.0 419 65.9
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 6.6e-133 478.0 339 74.6
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 1.5e-129 466.8 367 66.2
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 1.2e-126 457.2 370 65.7
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 6.6e-125 451.4 378 64.8
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 9.2e-119 431.0 367 61.0
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 2.5e-116 422.9 367 61.6
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 5.2e-114 415.2 367 61.3
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 8.9e-114 414.5 377 59.7
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 7.6e-113 411.4 377 59.7
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.9e-112 409.5 362 59.9
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 3.8e-112 409.1 372 61.3
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 6.4e-112 408.3 374 61.8
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 2.4e-111 406.4 366 62.6
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 3.2e-111 406.0 370 60.0
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 5.4e-111 405.2 377 59.9
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.3e-111 404.4 362 59.1
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 2.7e-110 402.9 366 61.5
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.5e-110 402.5 362 58.6
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.0e-110 401.7 367 58.0
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.3e-109 400.6 365 61.6
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.3e-109 400.6 375 57.3
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.3e-109 399.8 367 58.3
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 5.6e-108 395.2 367 57.5
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 5.6e-108 395.2 365 59.5
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 7.3e-108 394.8 378 59.0
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 3.6e-107 392.5 371 58.8
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.8e-107 392.1 367 57.5
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 6.2e-107 391.7 371 58.5
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 2.4e-106 389.8 371 60.6
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.2e-105 387.5 367 56.7
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.5e-105 387.1 367 56.4
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 5.8e-105 385.2 369 56.9
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 1.1e-103 380.9 352 59.1
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 2.4e-103 379.8 365 59.2
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 4.2e-103 379.0 377 56.5
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 9.3e-103 377.9 374 57.2
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 2.1e-102 376.7 357 58.3
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 1.3e-99 367.5 370 57.3
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 1.3e-99 367.5 356 57.3
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 1.3e-99 367.5 370 54.6
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 2.1e-99 366.7 370 57.3
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 2.1e-99 366.7 370 54.3
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 4.0e-98 362.5 329 60.5
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 4.0e-98 362.5 320 62.5
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.7e-96 357.1 321 61.1
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.7e-96 357.1 370 54.6
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.7e-96 357.1 357 56.6
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.6e-94 350.5 369 53.1
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 3.5e-94 349.4 355 57.5
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 6.0e-94 348.6 366 54.9
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.5e-92 343.2 337 56.1
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 3.3e-92 342.8 370 51.4
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 7.4e-92 341.7 369 52.8
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 1.6e-91 340.5 360 53.1
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.8e-91 339.7 372 53.2
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 3.7e-91 339.3 324 58.3
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 8.1e-91 338.2 373 51.5
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 5.3e-90 335.5 369 52.8
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 2.0e-89 333.6 370 51.9
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 2.0e-89 333.6 370 51.9
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 2.0e-89 333.6 354 51.1
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 2.0e-89 333.6 370 51.1
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 4.5e-89 332.4 368 50.3
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 4.5e-89 332.4 373 49.1
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 1.0e-88 331.3 354 50.8
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 1.3e-88 330.9 368 50.8
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 2.2e-88 330.1 370 51.4
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 2.9e-88 329.7 369 50.7
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 8.4e-88 328.2 374 51.6
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.1e-87 327.8 371 51.8
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.1e-87 327.8 371 51.8
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 1.9e-87 327.0 349 53.6
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 5.5e-87 325.5 372 50.8
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 2.7e-86 323.2 330 54.8
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 3.5e-86 322.8 376 50.0
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 3.5e-86 322.8 356 51.1
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 4.6e-86 322.4 355 52.1
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 4.6e-86 322.4 368 50.0
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 4.6e-86 322.4 354 50.8
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 7.9e-86 321.6 357 51.8
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 7.9e-86 321.6 368 48.6
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 1.0e-85 321.2 383 50.9
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 1.3e-85 320.9 369 50.4
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 1.3e-85 320.9 312 56.4
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 5.1e-85 318.9 371 52.6
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 6.7e-85 318.5 368 49.7
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 1.9e-84 317.0 368 48.9
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 3.3e-84 316.2 379 51.5
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 7.4e-84 315.1 369 49.1
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 7.4e-84 315.1 373 52.0
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 9.6e-84 314.7 373 48.5
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 1.3e-83 314.3 368 48.9
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 1.8e-82 310.5 370 49.2
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.8e-82 310.5 369 48.8
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.8e-82 310.5 369 48.8
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.8e-82 310.5 363 50.7
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 1.5e-81 307.4 311 54.7
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 4.5e-81 305.8 369 48.5
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 5.9e-81 305.4 369 49.3
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 1.0e-80 304.7 369 48.5
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 1.0e-80 304.7 369 48.5
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 3.8e-80 302.8 367 45.5
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 8.4e-80 301.6 400 48.8
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 1.2e-78 297.7 377 47.2
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 3.5e-78 296.2 371 48.5
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 2.3e-77 293.5 372 48.9
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 3.7e-75 286.2 370 47.0
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 4.1e-74 282.7 280 55.4
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 6.9e-74 282.0 334 50.3
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 4.2e-71 272.7 358 44.1
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 9.4e-71 271.6 372 44.6
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.4e-69 267.7 331 48.6
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.3e-67 261.2 348 46.0
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 8.2e-67 258.5 371 42.6
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 3.8e-64 249.6 349 42.4
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 5.0e-64 249.2 342 44.4
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 5.1e-61 239.2 282 46.8
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 5.9e-57 225.7 375 40.0
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 5.2e-53 212.6 333 41.4
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.1e-52 211.5 281 45.2
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 3.7e-51 206.5 195 57.4
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 6.8e-37 159.1 130 67.7
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 6.3e-35 152.5 131 67.2
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.3e-32 144.8 137 51.1
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.8e-32 143.3 139 48.9
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 1.8e-29 134.4 389 33.2
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.0e-29 133.7 131 50.4
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.5e-28 131.3 126 50.8
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 9.8e-28 128.6 157 45.9
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.4e-26 124.8 374 27.3
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 3.5e-25 120.2 250 34.4
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 5.0e-24 116.3 102 57.8
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 5.0e-24 116.3 409 30.1
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 8.6e-24 115.5 377 27.6
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 4.3e-23 113.2 199 36.7
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 1.0e-21 108.6 245 32.2
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 1.7e-19 101.3 379 28.8
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.5e-17 93.6 139 37.4
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 1.2e-12 78.6 64 59.4
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 1.5e-12 78.2 82 46.3
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 2.0e-12 77.8 98 48.0
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 3.5e-09 67.0 65 50.8
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 3.5e-09 67.0 65 50.8
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 2.3e-08 64.3 79 43.0
Cre17.g708350 Chlamydomonas reinhardtii HOM05D002428 ORTHO05D005085 3.3e-07 60.5 355 23.4


User provided reference genes

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