Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1298400 Malus domestica HOM05D007766 ORTHO05D009733 4.5e-150 534.6 286 100.0
Prupe.8G268800 Prunus persica HOM05D007766 ORTHO05D009733 1.3e-69 267.3 304 55.9
RcHm_v2.0_Chr7g0241981 Rosa chinensis HOM05D007766 ORTHO05D009733 2.0e-57 226.9 289 55.0
FvH4_5g39680 Fragaria vesca HOM05D007766 ORTHO05D009733 1.6e-51 207.2 250 56.0
FAN18G0466 Fragaria x ananassa HOM05D007766 ORTHO05D009733 1.6e-51 207.2 254 57.1
FAN18G1064 Fragaria x ananassa HOM05D007766 ORTHO05D009733 1.6e-51 207.2 254 57.1
FAN08G1563 Fragaria x ananassa HOM05D007766 ORTHO05D009733 8.2e-51 204.9 254 55.5
Eucgr.H01072 Eucalyptus grandis HOM05D007766 ORTHO05D009733 1.3e-48 197.6 253 53.4
Haze_04998 Corylus avellana HOM05D007766 ORTHO05D009733 1.5e-44 184.1 248 50.0
Dinv33093 Davidia involucrata HOM05D007766 ORTHO05D009733 1.5e-44 184.1 281 47.0
CANSAT25G3789 Cannabis sativa HOM05D007766 ORTHO05D009733 2.0e-44 183.7 251 50.6
PGR119G1997 Punica granatum HOM05D007766 ORTHO05D009733 7.4e-44 181.8 246 47.6
ClCG09G005330 Citrullus lanatus HOM05D007766 ORTHO05D009733 3.7e-43 179.5 238 46.6
Thecc.01G308600 Theobroma cacao HOM05D007766 ORTHO05D009733 4.1e-42 176.0 263 47.9
TWI36G1235 Tripterygium wilfordii HOM05D007766 ORTHO05D009733 9.1e-42 174.9 276 43.5
QL12p028831 Quercus lobata HOM05D007766 ORTHO05D009733 3.4e-41 172.9 296 43.6
CiPaw.07G114200 Carya illinoinensis HOM05D007766 ORTHO05D009733 1.3e-40 171.0 259 46.7
Cpa.g.sc151.50 Carica papaya HOM05D007766 ORTHO05D009733 8.5e-40 168.3 243 47.3
Gohir.D12G131000 Gossypium hirsutum HOM05D007766 ORTHO05D009733 1.4e-39 167.5 264 45.5
Nn3g21607 Nelumbo nucifera HOM05D007766 ORTHO05D009733 1.4e-39 167.5 247 45.7
Gohir.A12G127500 Gossypium hirsutum HOM05D007766 ORTHO05D009733 1.9e-39 167.2 260 45.4
CsaV3_7G029750 Cucumis sativus L. HOM05D007766 ORTHO05D009733 2.5e-39 166.8 252 44.0
AT1G02700 Arabidopsis thaliana HOM05D007766 ORTHO05D009733 4.2e-39 166.0 286 44.1
COL.COLO4_23278 Corchorus olitorius HOM05D007766 ORTHO05D009733 9.4e-39 164.9 260 44.6
Gorai.008G142300 Gossypium raimondii HOM05D007766 ORTHO05D009733 9.4e-39 164.9 264 45.1
Manes.05G001200 Manihot esculenta HOM05D007766 ORTHO05D009733 1.6e-38 164.1 250 42.8
Ca_09199_v3 Cicer arietinum L. HOM05D007766 ORTHO05D009733 2.1e-38 163.7 256 44.1
MELO3C015946.2 Cucumis melo HOM05D007766 ORTHO05D009733 6.1e-38 162.2 265 44.9
VMungo1383G0118 Vigna mungo HOM05D007766 ORTHO05D009733 6.1e-38 162.2 260 43.8
AL1G12070 Arabidopsis lyrata HOM05D007766 ORTHO05D009733 7.9e-38 161.8 291 43.6
Sabra14G0092600 Salix brachista HOM05D007766 ORTHO05D009733 7.9e-38 161.8 257 46.7
Cc01_g21240 Coffea canephora HOM05D007766 ORTHO05D009733 3.0e-37 159.8 250 44.0
Sed0007654 Sechium edule HOM05D007766 ORTHO05D009733 3.0e-37 159.8 249 45.0
Actinidia27601 Actinidia chinensis HOM05D007766 ORTHO05D009733 3.9e-37 159.5 251 43.4
Glyma.19G214500 Glycine max HOM05D007766 ORTHO05D009733 3.9e-37 159.5 262 46.6
Carub.0001s0178 Capsella rubella HOM05D007766 ORTHO05D009733 5.2e-37 159.1 258 48.8
Atru.chr5.1065 Acer truncatum HOM05D007766 ORTHO05D009733 8.8e-37 158.3 252 43.7
CARHR002000 Cardamine hirsuta HOM05D007766 ORTHO05D009733 8.8e-37 158.3 259 44.0
Aa31LG1G9860 Aethionema arabicum HOM05D007766 ORTHO05D009733 1.1e-36 157.9 287 43.6
GSVIVG01028075001 Vitis vinifera HOM05D007766 ORTHO05D009733 1.1e-36 157.9 242 46.7
Cfa005851 Carpinus fangiana HOM05D007766 ORTHO05D009733 2.0e-36 157.1 276 45.7
Phvul.001G211300 Phaseolus vulgaris HOM05D007766 ORTHO05D009733 2.0e-36 157.1 262 44.7
Lj1g0002879 Lotus japonicus HOM05D007766 ORTHO05D009733 3.3e-36 156.4 260 43.8
arahy.Tifrunner.gnm1.ann1.28FBJ8 Arachis hypogaea HOM05D007766 ORTHO05D009733 4.4e-36 156.0 253 45.8
Duzib138G0131 Durio zibethinus HOM05D007766 ORTHO05D009733 9.7e-36 154.8 262 44.7
Potri.014G124500 Populus trichocarpa HOM05D007766 ORTHO05D009733 1.3e-35 154.5 257 44.4
BraA10t42417Z Brassica rapa HOM05D000768 ORTHO05D000665 1.7e-35 154.1 289 45.3
BolC5t28921H Brassica oleracea HOM05D000768 ORTHO05D000665 2.2e-35 153.7 284 46.1
Lj1C21T2 Lonicera japonica HOM05D007766 ORTHO05D009733 3.7e-35 152.9 243 44.9
Nitab4.5_0000116g0120 Nicotiana tabacum HOM05D007766 ORTHO05D009733 3.7e-35 152.9 248 44.4
Psat3g020680 Pisum sativum HOM05D007766 ORTHO05D009733 3.7e-35 152.9 242 44.6
arahy.Tifrunner.gnm1.ann1.MEA9U7 Arachis hypogaea HOM05D007766 ORTHO05D009733 4.8e-35 152.5 253 47.0
Medtr7g109280 Medicago truncatula HOM05D007766 ORTHO05D009733 6.3e-35 152.1 244 43.4
C05p01390 Brassica napus HOM05D000768 ORTHO05D000665 4.1e-34 149.4 284 45.8
PGSC0003DMG400031827 Solanum tuberosum HOM05D007766 ORTHO05D009733 4.1e-34 149.4 262 42.7
Ciclev10024028m.g Citrus clementina HOM05D007766 ORTHO05D009733 5.3e-34 149.1 173 54.9
TPR.G20299 Trifolium pratense HOM05D007766 ORTHO05D009733 5.3e-34 149.1 243 42.4
CSS0041323 Camellia sinensis var. sinensis HOM05D007766 ORTHO05D009733 1.2e-33 147.9 269 41.6
vmacro02422 Vaccinium macrocarpon HOM05D007766 ORTHO05D009733 1.6e-33 147.5 251 47.4
Lalb_Chr15g0078421 Lupinus albus HOM05D007766 ORTHO05D009733 2.6e-33 146.7 257 41.2
Rhsim13G0007300 Rhododendron simsii HOM05D007766 ORTHO05D009733 3.5e-33 146.4 192 49.5
Sopen09g030400 Solanum pennellii HOM05D007766 ORTHO05D009733 1.7e-32 144.1 262 42.7
Nitab4.5_0000803g0050 Nicotiana tabacum HOM05D007766 ORTHO05D009733 2.9e-32 143.3 244 43.0
Peaxi162Scf00001g00292 Petunia axillaris HOM05D007766 ORTHO05D009733 5.5e-31 139.0 244 45.1
Thhalv10008633m.g Eutrema salsugineum HOM05D007766 ORTHO05D009733 9.4e-31 138.3 286 40.9
Migut.D00109 Erythranthe guttata HOM05D007766 ORTHO05D009733 1.8e-29 134.0 243 37.0
Sp1g01680 Schrenkiella parvula HOM05D007766 ORTHO05D009733 6.7e-29 132.1 284 38.4
Sc17g0002970 Simmondsia chinensis HOM05D007766 ORTHO05D009733 1.2e-28 131.3 279 38.0
SGA_v2.0_scaffold334G49048 Striga asiatica HOM05D007766 ORTHO05D009733 3.3e-28 129.8 243 40.3
TAR636G1646 Trochodendron aralioides HOM05D007766 ORTHO05D009733 4.4e-28 129.4 157 51.6
Aqoxy2G02831 Aquilegia oxysepala HOM05D007766 ORTHO05D009733 1.7e-27 127.5 240 43.3
ECA248G3735 Erigeron canadensis HOM05D007766 ORTHO05D009733 1.7e-27 127.5 177 44.6
PSO478G3523 Papaver somniferum HOM05D007766 ORTHO05D009733 1.8e-26 124.0 241 39.8
A10p01420 Brassica napus HOM05D000768 ORTHO05D000665 1.2e-25 121.3 255 44.3
Ah.15g092870 Amaranthus hybridus HOM05D007766 ORTHO05D009733 2.0e-25 120.6 190 43.2
unitig_60.g25659 Utricularia gibba HOM05D001839 ORTHO05D001867 3.8e-24 116.3 150 46.0
MBI18_g25084_MAGBIO Magnolia biondii HOM05D007766 ORTHO05D009733 8.5e-24 115.2 210 39.5
DCAR_002867 Daucus carota HOM05D007766 ORTHO05D009733 4.2e-23 112.8 241 40.7
PSO782G1382 Papaver somniferum HOM05D007766 ORTHO05D009733 4.2e-23 112.8 240 38.3
EL10Ac7g17611 Beta vulgaris HOM05D007766 ORTHO05D009733 4.7e-22 109.4 238 34.9
Lsat_1_v5_gn_5_190141 Lactuca sativa HOM05D007766 ORTHO05D009733 4.7e-22 109.4 247 33.6
HanXRQChr01g0000891 Helianthus annuus HOM05D007766 ORTHO05D009733 4.4e-20 102.8 223 34.5
CDE05G0244 Ceratophyllum demersum HOM05D007766 ORTHO05D009733 1.8e-18 97.4 173 39.9
Solyc09g075600.3 Solanum lycopersicum HOM05D007766 ORTHO05D009733 1.7e-16 90.9 80 60.0
Zm00001eb330520 Zea mays HOM05D007766 ORTHO05D009733 3.6e-14 83.2 253 32.0
Actinidia21421 Actinidia chinensis HOM05D007766 ORTHO05D009733 4.4e-12 76.3 61 68.9
Os07g0675200 Oryza sativa ssp. japonica HOM05D007766 ORTHO05D009733 4.5e-09 66.2 89 49.4
Medtr8g023290 Medicago truncatula HOM05D007766 ORTHO05D009733 2.3e-08 63.9 116 40.5
Sc17g0002980 Simmondsia chinensis HOM05D007766 ORTHO05D009733 1.9e-07 60.8 37 81.1


User provided reference genes

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