Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 1.2e-74 283.9 238 100.0
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 3.5e-63 245.7 241 63.1
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 1.0e-38 164.5 236 54.2
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 5.4e-24 115.5 209 43.5
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.5e-23 112.8 217 40.1
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 7.8e-23 111.7 216 38.0
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 2.3e-22 110.2 218 40.4
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.3e-22 110.2 217 39.2
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.3e-22 110.2 218 40.4
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.3e-22 110.2 218 40.4
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 8.7e-22 108.2 212 41.5
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 1.6e-20 104.0 215 42.3
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 1.1e-19 101.3 215 35.8
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 2.4e-19 100.1 215 34.9
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 4.0e-19 99.4 215 35.3
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.9e-19 98.6 215 35.3
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 6.9e-19 98.6 215 34.0
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 1.5e-18 97.4 237 34.6
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 2.0e-18 97.1 216 36.1
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 2.6e-18 96.7 214 35.5
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.4e-18 96.3 215 34.4
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 5.8e-18 95.5 214 35.0
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.7e-17 94.0 237 35.4
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.7e-17 94.0 237 35.4
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 2.2e-17 93.6 236 33.9
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 2.9e-17 93.2 209 34.4
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.8e-17 92.8 235 34.0
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 3.8e-17 92.8 223 35.0
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 4.9e-17 92.4 227 31.3
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 4.9e-17 92.4 223 33.6
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 6.4e-17 92.0 227 31.3
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 6.4e-17 92.0 239 33.9
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 1.9e-16 90.5 236 33.5
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 1.9e-16 90.5 236 33.5
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 1.9e-16 90.5 212 34.9
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 1.9e-16 90.5 231 32.0
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 2.4e-16 90.1 213 33.3
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 3.2e-16 89.7 233 33.5
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 3.2e-16 89.7 238 33.2
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 4.2e-16 89.4 218 33.0
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 4.2e-16 89.4 210 33.3
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 7.1e-16 88.6 214 34.1
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 7.1e-16 88.6 237 34.6
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 7.1e-16 88.6 209 34.4
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 7.1e-16 88.6 213 31.9
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 9.3e-16 88.2 214 31.8
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 9.3e-16 88.2 213 33.3
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 9.3e-16 88.2 235 31.5
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.2e-15 87.8 235 32.3
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 1.2e-15 87.8 210 31.9
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 1.2e-15 87.8 213 33.8
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 1.2e-15 87.8 219 32.4
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 2.1e-15 87.0 236 32.6
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 2.1e-15 87.0 210 33.3
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 2.7e-15 86.7 208 33.7
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 2.7e-15 86.7 210 36.7
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 3.5e-15 86.3 222 33.8
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 3.5e-15 86.3 226 35.0
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 6.0e-15 85.5 219 31.1
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 6.0e-15 85.5 210 31.9
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.0e-15 85.5 212 36.3
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 7.9e-15 85.1 235 31.9
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 1.0e-14 84.7 227 31.7
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 1.0e-14 84.7 215 47.9
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.0e-14 84.7 215 30.7
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.3e-14 84.3 232 31.9
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 1.3e-14 84.3 215 30.2
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.3e-14 84.3 237 32.5
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 2.3e-14 83.6 210 34.3
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.3e-14 83.6 216 31.5
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 3.0e-14 83.2 232 31.9
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 3.9e-14 82.8 217 38.2
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 3.9e-14 82.8 215 40.5
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.7e-14 82.0 211 38.4
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 8.7e-14 81.6 229 37.6
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 1.1e-13 81.3 211 46.0
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 1.1e-13 81.3 212 33.5
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 1.1e-13 81.3 212 33.5
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 1.1e-13 81.3 232 32.3
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 1.1e-13 81.3 212 33.5
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 1.1e-13 81.3 212 33.5
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.1e-13 81.3 236 34.3
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 1.5e-13 80.9 212 34.0
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.5e-13 80.9 219 30.6
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.5e-13 80.9 212 32.1
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.5e-13 80.9 214 30.4
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 1.9e-13 80.5 240 31.7
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 2.5e-13 80.1 209 33.5
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 2.5e-13 80.1 215 30.7
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 2.5e-13 80.1 218 31.7
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 3.3e-13 79.7 217 32.3
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 3.3e-13 79.7 224 29.0
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 3.3e-13 79.7 214 40.7
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 3.3e-13 79.7 219 29.7
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 4.3e-13 79.3 212 33.5
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 5.6e-13 79.0 213 30.5
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 7.4e-13 78.6 213 39.9
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.3e-12 77.8 209 35.9
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 2.1e-12 77.0 220 32.3
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 2.8e-12 76.6 224 42.0
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 3.7e-12 76.3 226 42.9
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 3.7e-12 76.3 124 42.7
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 3.7e-12 76.3 96 45.8
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.8e-12 75.9 229 27.9
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 8.1e-12 75.1 235 30.6
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 8.1e-12 75.1 235 30.6
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-11 74.7 215 29.8
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 2.4e-11 73.6 215 34.4
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 4.0e-11 72.8 207 30.9
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 4.0e-11 72.8 219 31.1
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.0e-11 72.8 217 30.0
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 5.3e-11 72.4 212 30.2
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 5.3e-11 72.4 212 30.2
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 5.3e-11 72.4 233 30.0
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 5.3e-11 72.4 212 28.3
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 6.9e-11 72.0 212 29.7
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 9.0e-11 71.6 215 28.8
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-10 71.2 215 29.8
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 1.2e-10 71.2 99 46.5
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.5e-10 70.9 216 29.2
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.0e-10 70.5 236 29.2
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 2.6e-10 70.1 226 30.5
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.4e-10 69.7 215 28.4
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 3.4e-10 69.7 214 30.4
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 4.5e-10 69.3 114 40.4
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 5.8e-10 68.9 102 41.2
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.0e-09 68.2 212 29.2
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 1.0e-09 68.2 214 29.0
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 1.0e-09 68.2 213 29.1
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 1.3e-09 67.8 127 40.2
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 2.9e-09 66.6 207 35.7
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 2.9e-09 66.6 221 45.2
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 3.8e-09 66.2 213 29.6
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 3.8e-09 66.2 218 28.0
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 6.4e-09 65.5 219 32.0
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.4e-09 65.5 231 31.6
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-08 64.7 213 29.6
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.5e-08 63.5 104 35.6
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 4.2e-08 62.8 207 32.4
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 5.5e-08 62.4 216 28.7
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 7.1e-08 62.0 216 28.7
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 9.3e-08 61.6 214 38.8
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 9.3e-08 61.6 98 45.9
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 9.3e-08 61.6 219 29.2
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.0e-07 58.9 211 28.0
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.3e-06 57.8 226 28.3
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 1.3e-06 57.8 117 39.3
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.8e-06 57.4 96 39.6
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-06 57.4 91 36.3
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.3e-06 57.0 91 36.3
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 5.1e-06 55.8 195 36.9


User provided reference genes

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