Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 1.6e-106 389.4 193 100.0
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 3.2e-83 312.0 190 79.5
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 1.9e-75 286.2 189 72.5
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 2.5e-72 275.8 188 70.7
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 1.7e-71 273.1 188 70.2
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.7e-71 273.1 188 70.7
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.7e-71 273.1 188 70.2
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 6.3e-71 271.2 188 70.2
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.5e-69 266.5 185 68.6
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.4e-57 226.9 194 59.3
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 9.7e-56 220.7 193 59.1
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 1.1e-54 217.2 190 58.4
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.1e-54 217.2 196 56.1
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 1.4e-54 216.9 187 55.6
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 5.3e-54 214.9 162 60.5
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.6e-53 213.4 196 55.6
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 3.5e-53 212.2 190 54.7
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 4.5e-53 211.8 196 56.1
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 4.5e-53 211.8 189 55.0
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 2.2e-52 209.5 190 56.3
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 5.5e-51 204.9 192 54.7
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 9.4e-51 204.1 103 96.1
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 6.1e-50 201.4 170 55.3
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 8.0e-50 201.1 172 55.8
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 1.0e-49 200.7 171 55.6
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 1.0e-49 200.7 199 50.8
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.4e-49 200.3 188 54.3
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 2.3e-49 199.5 195 50.8
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 3.0e-49 199.1 188 53.7
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 3.0e-49 199.1 165 57.0
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 3.0e-49 199.1 199 50.3
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 8.8e-49 197.6 180 55.6
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 1.2e-48 197.2 189 50.8
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 1.5e-48 196.8 204 51.5
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 2.0e-48 196.4 151 62.9
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 3.4e-48 195.7 189 52.4
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 3.4e-48 195.7 188 53.7
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 4.4e-48 195.3 185 53.5
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 4.4e-48 195.3 170 55.9
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 1.3e-47 193.7 188 53.2
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 1.3e-47 193.7 152 59.9
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 1.3e-47 193.7 190 52.6
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 2.8e-47 192.6 200 51.0
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 4.8e-47 191.8 190 50.0
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 1.4e-46 190.3 173 55.5
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 1.8e-46 189.9 166 54.2
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 3.1e-46 189.1 193 53.9
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 3.1e-46 189.1 177 54.2
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 4.1e-46 188.7 190 51.1
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 9.1e-46 187.6 132 65.9
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 9.1e-46 187.6 196 52.0
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 1.2e-45 187.2 190 53.7
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 1.2e-45 187.2 190 53.7
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 3.5e-45 185.7 151 58.9
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 4.5e-45 185.3 155 56.8
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 5.9e-45 184.9 161 52.8
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 2.9e-44 182.6 128 61.7
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 6.5e-44 181.4 153 55.6
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 1.5e-43 180.3 167 52.7
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 1.9e-43 179.9 157 56.7
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 2.5e-43 179.5 186 51.6
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 4.2e-43 178.7 190 47.9
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 4.2e-43 178.7 190 47.9
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 4.2e-43 178.7 194 52.6
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 5.5e-43 178.3 191 49.7
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 5.5e-43 178.3 191 51.3
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 1.2e-42 177.2 180 45.0
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 1.6e-42 176.8 179 52.5
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 1.6e-42 176.8 189 47.1
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 2.1e-42 176.4 152 53.3
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 2.7e-42 176.0 155 54.8
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 6.1e-42 174.9 161 52.8
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 2.3e-41 172.9 191 48.7
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 2.3e-41 172.9 187 45.5
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 4.0e-41 172.2 153 56.9
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 8.8e-41 171.0 191 47.1
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 5.7e-40 168.3 160 48.8
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 1.3e-39 167.2 183 48.1
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 2.2e-39 166.4 175 45.7
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 6.3e-39 164.9 195 45.1
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 1.1e-38 164.1 188 46.3
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 1.1e-38 164.1 161 48.4
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 1.4e-38 163.7 139 53.2
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 2.4e-38 162.9 163 46.6
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 2.4e-38 162.9 163 50.9
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 5.4e-38 161.8 169 46.2
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 9.1e-38 161.0 176 45.5
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 1.6e-37 160.2 172 48.8
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 4.5e-37 158.7 189 46.6
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 4.5e-37 158.7 189 46.6
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 5.9e-37 158.3 194 46.9
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 1.7e-36 156.8 176 45.5
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 1.7e-36 156.8 162 48.8
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 2.3e-36 156.4 190 45.8
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 5.0e-36 155.2 179 44.1
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 5.0e-36 155.2 144 47.2
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 1.1e-35 154.1 191 44.5
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 1.5e-35 153.7 191 44.5
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 2.5e-35 152.9 190 45.8
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 3.3e-35 152.5 163 45.4
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 7.2e-35 151.4 160 48.1
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 7.2e-35 151.4 159 47.8
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 9.5e-35 151.0 157 49.0
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 9.5e-35 151.0 155 49.7
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 1.2e-34 150.6 187 43.9
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 1.4e-33 147.1 194 44.3
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 1.4e-33 147.1 194 44.3
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 1.4e-33 147.1 159 45.9
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.8e-33 146.7 167 44.3
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.8e-33 146.7 162 43.8
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 2.3e-33 146.4 178 42.7
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 8.9e-33 144.4 206 39.8
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 8.9e-33 144.4 158 46.2
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 1.2e-32 144.1 163 40.5
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 1.5e-32 143.7 189 43.4
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 2.6e-32 142.9 162 44.4
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 4.4e-32 142.1 185 42.2
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 4.4e-32 142.1 185 44.9
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 4.4e-32 142.1 162 44.4
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 4.4e-32 142.1 158 44.9
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 5.7e-32 141.7 168 43.5
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 5.7e-32 141.7 152 50.0
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 7.5e-32 141.4 164 45.7
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 7.5e-32 141.4 158 44.9
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 9.8e-32 141.0 162 43.8
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 2.2e-31 139.8 157 45.2
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 4.9e-31 138.7 168 43.5
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 6.3e-31 138.3 185 43.8
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 1.1e-30 137.5 185 43.2
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 1.8e-30 136.7 177 40.7
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 9.2e-30 134.4 159 43.4
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 7.8e-29 131.3 154 46.8
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 1.0e-28 131.0 156 42.9
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 3.3e-27 125.9 115 51.3
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 9.5e-27 124.4 145 40.7
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 2.1e-26 123.2 110 51.8
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 1.0e-25 120.9 161 41.0
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 6.8e-25 118.2 166 43.4
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 7.5e-24 114.8 166 42.8
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 2.2e-23 113.2 169 39.1
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 8.3e-23 111.3 129 45.7
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 5.4e-22 108.6 152 38.8
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 1.2e-21 107.5 112 45.5
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 3.5e-21 105.9 185 38.4
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 2.3e-20 103.2 150 40.0
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 8.6e-20 101.3 149 36.9
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 8.6e-20 101.3 181 38.1
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 1.9e-19 100.1 171 37.4
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 2.8e-18 96.3 114 42.1
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 8.1e-18 94.7 107 46.7
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 1.8e-17 93.6 144 31.2
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 6.8e-17 91.7 181 34.8
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.2e-16 90.9 157 38.2
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.5e-16 90.5 193 34.7
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 4.4e-16 89.0 178 35.4
Mapoly0003s0268 Marchantia polymorpha HOM05D004153 ORTHO05D004678 5.8e-16 88.6 149 34.9
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.3e-15 87.4 142 34.5
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 3.7e-15 85.9 135 35.6
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 3.7e-15 85.9 186 33.9
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 6.4e-15 85.1 143 34.3
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 1.1e-14 84.3 148 35.1
Rhsim09G0027200 Rhododendron simsii HOM05D041434 ORTHO05D004678 1.9e-14 83.6 139 36.7
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 3.5e-13 79.3 103 41.7
Rhsim07G0194500 Rhododendron simsii HOM05D035787 ORTHO05D004678 6.0e-13 78.6 154 35.1
Rhsim07G0178900 Rhododendron simsii HOM05D035787 ORTHO05D004678 4.3e-11 72.4 154 34.4
RhsimUnG0080000 Rhododendron simsii HOM05D035787 ORTHO05D004678 4.3e-11 72.4 154 34.4
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 5.6e-11 72.0 131 34.4
BcaB01g03159 Brassica carinata HOM05D004153 ORTHO05D004678 9.5e-11 71.2 152 36.8
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 1.2e-10 70.9 105 40.0
Cre24.g755497 Chlamydomonas reinhardtii HOM05D004153 ORTHO05D004678 1.1e-09 67.8 148 30.4


User provided reference genes

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